Wall clock time and date at job start Mon Mar 30 2020 00:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47195 * 2 1 4 4 C 1.50701 * 109.46523 * 240.00412 * 2 1 3 5 5 H 1.08001 * 119.99942 * 275.01237 * 4 2 1 6 6 C 1.37873 * 120.00618 * 95.02091 * 4 2 1 7 7 N 1.31508 * 120.00618 * 184.89611 * 6 4 2 8 8 Si 1.86807 * 119.99480 * 4.89187 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.80368 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.79994 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.80306 * 8 6 4 12 12 N 1.46495 * 109.47258 * 120.00465 * 2 1 3 13 13 C 1.46500 * 120.00182 * 59.99665 * 12 2 1 14 14 C 1.34774 * 119.99750 * 239.99568 * 12 2 1 15 15 O 1.21590 * 120.00243 * 0.02562 * 14 12 2 16 16 C 1.47538 * 119.99765 * 179.97438 * 14 12 2 17 17 C 1.40331 * 120.60260 * 270.00033 * 16 14 12 18 18 F 1.35096 * 120.88030 * 0.02562 * 17 16 14 19 19 C 1.38750 * 118.24452 * 179.97438 * 17 16 14 20 20 C 1.38129 * 119.34607 * 359.97438 * 19 17 16 21 21 N 1.32002 * 121.18830 * 0.02562 * 20 19 17 22 22 C 1.31937 * 121.91974 * 359.72482 * 21 20 19 23 23 F 1.35097 * 119.74673 * 180.26874 * 22 21 20 24 24 H 1.09001 * 109.47473 * 54.83669 * 1 2 3 25 25 H 1.08999 * 109.47113 * 294.83771 * 1 2 3 26 26 H 1.09005 * 109.47519 * 174.83977 * 1 2 3 27 27 H 0.96999 * 120.00117 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.47446 * 90.00020 * 13 12 2 29 29 H 1.08994 * 109.47244 * 210.00301 * 13 12 2 30 30 H 1.09004 * 109.46854 * 329.99904 * 13 12 2 31 31 H 1.08001 * 120.32349 * 180.02562 * 19 17 16 32 32 H 1.08002 * 119.41280 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.1351 -1.7854 -1.2293 6 6 2.3605 0.0121 -2.3580 7 7 2.7064 -0.6130 -3.4621 8 14 2.3138 1.8792 -2.3173 9 1 3.5989 2.3949 -1.7809 10 1 2.1072 2.3993 -3.6928 11 1 1.1982 2.3275 -1.4457 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0933 1.4279 14 6 2.7933 -0.0357 2.0832 15 8 3.0867 1.1285 1.8910 16 6 3.2846 -0.7312 3.2880 17 6 2.5364 -0.7188 4.4751 18 9 1.3521 -0.0721 4.5416 19 6 3.0444 -1.3892 5.5786 20 6 4.2577 -2.0413 5.4750 21 7 4.9416 -2.0374 4.3460 22 6 4.5020 -1.4198 3.2662 23 9 5.2355 -1.4486 2.1320 24 1 -0.3634 0.5918 -0.8401 25 1 -0.3633 0.4317 0.9326 26 1 -0.3634 -1.0235 -0.0924 27 1 2.9377 -0.1046 -4.2552 28 1 2.4156 -2.7378 0.9715 29 1 1.6238 -2.2853 2.5000 30 1 0.6903 -2.3002 0.9845 31 1 2.4962 -1.4017 6.5091 32 1 4.6539 -2.5638 6.3331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338414429.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:06 Heat of formation + Delta-G solvation = -98.740121 kcal Electronic energy + Delta-G solvation = -21107.729016 eV Core-core repulsion = 17511.252549 eV Total energy + Delta-G solvation = -3596.476467 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.42048 -50.38596 -41.55521 -40.37053 -37.38584 -34.90739 -33.71242 -32.72631 -31.66072 -27.96948 -27.33753 -26.16202 -24.77998 -23.15109 -20.68286 -19.77438 -19.39037 -19.31966 -18.35153 -17.87913 -17.36009 -17.28277 -16.77664 -16.45827 -15.93291 -15.85311 -15.71769 -15.04472 -14.64394 -14.52280 -14.35647 -14.15403 -14.10051 -13.50803 -13.36699 -13.16553 -13.10455 -12.63239 -12.42385 -11.88379 -11.57894 -11.36791 -11.04502 -10.84736 -10.82529 -10.34203 -9.61547 -8.42386 -6.47101 -0.61721 -0.40350 1.20658 1.23350 1.29998 1.37263 1.91741 2.09179 2.21832 2.23061 2.59737 2.94847 3.16749 3.35788 3.55148 4.05544 4.16550 4.35401 4.35807 4.42101 4.48056 4.66229 4.66465 4.68456 4.79372 5.02460 5.24733 5.28754 5.44798 5.61160 6.03181 6.31128 6.44187 6.57995 6.93018 7.20489 8.72910 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.026090 B = 0.006625 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.959161 B = 4225.427066 C = 4573.042861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.220 3.780 3 H 0.041 0.959 4 C -0.523 4.523 5 H 0.054 0.946 6 C 0.032 3.968 7 N -0.929 5.929 8 Si 0.921 3.079 9 H -0.287 1.287 10 H -0.271 1.271 11 H -0.248 1.248 12 N -0.579 5.579 13 C 0.085 3.915 14 C 0.548 3.452 15 O -0.584 6.584 16 C -0.248 4.248 17 C 0.191 3.809 18 F -0.116 7.116 19 C -0.182 4.182 20 C 0.190 3.810 21 N -0.526 5.526 22 C 0.349 3.651 23 F -0.116 7.116 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.270 0.730 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.214 0.786 32 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.340 -4.899 22.141 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.118 3.882 3 H 0.059 0.941 4 C -0.561 4.561 5 H 0.072 0.928 6 C -0.168 4.168 7 N -0.568 5.568 8 Si 0.746 3.254 9 H -0.213 1.213 10 H -0.196 1.196 11 H -0.172 1.172 12 N -0.308 5.308 13 C -0.058 4.058 14 C 0.334 3.666 15 O -0.466 6.466 16 C -0.256 4.256 17 C 0.163 3.837 18 F -0.094 7.094 19 C -0.202 4.202 20 C 0.034 3.966 21 N -0.242 5.242 22 C 0.197 3.803 23 F -0.095 7.095 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.231 0.769 32 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -1.418 -4.697 21.687 22.235 hybrid contribution -0.422 1.462 -1.260 1.975 sum -1.840 -3.236 20.426 20.763 Atomic orbital electron populations 1.22075 0.94909 1.02308 1.00403 1.19293 0.93259 0.93419 0.82228 0.94129 1.21279 1.44148 0.94806 0.95868 0.92753 1.25599 0.93881 1.02200 0.95111 1.69969 1.46757 1.37602 1.02454 0.86142 0.79550 0.81803 0.77874 1.21347 1.19621 1.17152 1.48351 1.47539 1.13331 1.21534 1.21787 1.02228 0.80203 1.01545 1.18254 0.78979 0.86029 0.83355 1.90733 1.59650 1.18522 1.77662 1.20682 0.99218 1.08569 0.97110 1.17960 0.81217 0.91981 0.92526 1.91602 1.42786 1.78528 1.96480 1.22733 0.99127 0.98965 0.99372 1.23677 0.88357 0.91044 0.93518 1.67291 1.36612 1.20619 0.99654 1.17922 0.85913 0.93193 0.83306 1.91672 1.76547 1.94006 1.47281 0.92538 0.93219 0.91378 0.92065 0.93370 0.90005 0.89125 0.76897 0.74299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.65 9.04 71.98 0.65 -5.00 16 2 C 0.22 10.81 2.30 44.25 0.10 10.91 16 3 H 0.04 2.22 4.05 -2.39 -0.01 2.21 16 4 C -0.52 -29.67 8.82 25.60 0.23 -29.44 16 5 H 0.05 3.29 7.67 -2.91 -0.02 3.27 16 6 C 0.03 1.91 5.47 84.65 0.46 2.37 16 7 N -0.93 -57.54 13.96 21.44 0.30 -57.24 16 8 Si 0.92 46.98 26.99 68.60 1.85 48.83 16 9 H -0.29 -15.34 7.11 99.48 0.71 -14.63 16 10 H -0.27 -13.02 7.11 99.48 0.71 -12.32 16 11 H -0.25 -11.89 6.82 99.48 0.68 -11.21 16 12 N -0.58 -25.15 2.75 -830.59 -2.29 -27.44 16 13 C 0.08 2.85 9.36 127.77 1.20 4.05 16 14 C 0.55 24.14 6.50 86.70 0.56 24.70 16 15 O -0.58 -30.76 16.43 -4.00 -0.07 -30.82 16 16 C -0.25 -8.19 3.94 -19.92 -0.08 -8.27 16 17 C 0.19 4.49 6.95 22.90 0.16 4.65 16 18 F -0.12 -2.97 16.93 44.97 0.76 -2.21 16 19 C -0.18 -2.14 10.09 22.37 0.23 -1.91 16 20 C 0.19 2.26 11.16 84.64 0.94 3.20 16 21 N -0.53 -12.53 10.36 -195.86 -2.03 -14.56 16 22 C 0.35 11.27 8.42 85.07 0.72 11.99 16 23 F -0.12 -4.59 16.86 44.97 0.76 -3.84 16 24 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.07 2.53 6.88 -2.38 -0.02 2.51 16 27 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 28 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 29 H 0.08 2.16 6.55 -2.39 -0.02 2.15 16 30 H 0.09 2.82 6.53 -2.39 -0.02 2.80 16 31 H 0.21 0.39 8.06 -2.91 -0.02 0.36 16 32 H 0.24 0.06 8.06 -2.91 -0.02 0.04 16 Total: -1.00 -79.74 287.89 5.59 -74.14 By element: Atomic # 1 Polarization: -5.26 SS G_CDS: 1.14 Total: -4.12 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 5.17 Total: 17.25 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -4.02 Total: -99.24 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.07 Total: -30.82 kcal Atomic # 9 Polarization: -7.57 SS G_CDS: 1.52 Total: -6.05 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.85 Total: 48.83 kcal Total: -79.74 5.59 -74.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338414429.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.596 kcal (2) G-P(sol) polarization free energy of solvation -79.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds