Wall clock time and date at job start Mon Mar 30 2020 00:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.46505 * 120.00341 * 300.00268 * 12 2 1 14 14 C 1.34779 * 119.99848 * 120.00098 * 12 2 1 15 15 O 1.21583 * 120.00323 * 359.97438 * 14 12 2 16 16 C 1.47544 * 120.00091 * 180.02562 * 14 12 2 17 17 C 1.40316 * 120.60647 * 270.00032 * 16 14 12 18 18 F 1.35104 * 120.87677 * 0.02562 * 17 16 14 19 19 C 1.38744 * 118.24968 * 179.97438 * 17 16 14 20 20 C 1.38133 * 119.34661 * 359.97438 * 19 17 16 21 21 N 1.31996 * 121.18412 * 0.02562 * 20 19 17 22 22 C 1.31934 * 121.92303 * 359.71549 * 21 20 19 23 23 F 1.35103 * 119.75039 * 180.29605 * 22 21 20 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 28 28 H 1.09005 * 109.46851 * 89.99998 * 13 12 2 29 29 H 1.08997 * 109.47129 * 209.99273 * 13 12 2 30 30 H 1.08993 * 109.46804 * 329.99912 * 13 12 2 31 31 H 1.07997 * 120.32879 * 180.02562 * 19 17 16 32 32 H 1.08002 * 119.41134 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.0866 1.1285 -1.8912 16 6 3.2846 -0.7311 -3.2882 17 6 4.5086 -1.4168 -3.2681 18 9 5.2628 -1.4564 -2.1479 19 6 4.9234 -2.0542 -4.4285 20 6 4.1267 -1.9948 -5.5554 21 7 2.9792 -1.3426 -5.5474 22 6 2.5358 -0.7239 -4.4698 23 9 1.3518 -0.0744 -4.5090 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7082 1.1609 3.4844 28 1 0.7375 -2.1444 -1.9993 29 1 2.4628 -2.5819 -1.9863 30 1 1.5295 -2.5969 -0.4708 31 1 5.8596 -2.5921 -4.4504 32 1 4.4484 -2.4909 -6.4592 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338414430.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:09 Heat of formation + Delta-G solvation = -75.575639 kcal Electronic energy + Delta-G solvation = -21001.001546 eV Core-core repulsion = 17405.529567 eV Total energy + Delta-G solvation = -3595.471979 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.27260 -49.17633 -40.30549 -38.81667 -35.47368 -33.13972 -32.34402 -31.45496 -29.29645 -26.33525 -25.30009 -24.90483 -23.73380 -21.56844 -19.14443 -18.65460 -18.21200 -17.13512 -16.61745 -16.30506 -16.02872 -15.66870 -15.56754 -14.97423 -14.88161 -14.40759 -14.22296 -13.50194 -13.21691 -13.13964 -12.58872 -12.55000 -12.22744 -11.77799 -11.59810 -11.09586 -10.90472 -10.79663 -10.43579 -10.26310 -10.22405 -9.86263 -9.44583 -9.29969 -9.14850 -8.47421 -7.76544 -6.11659 -4.20228 0.40498 0.59303 2.86949 3.08829 3.13067 3.25264 3.31877 3.33459 3.63273 3.65241 4.15883 4.34858 4.54875 4.61021 5.03988 5.19813 5.27144 5.33782 5.50017 5.57852 5.91985 6.16977 6.25049 6.70177 6.77931 6.99052 7.22155 7.26636 7.41889 7.64953 7.93653 8.10415 8.34038 8.65010 8.86128 9.45952 10.93856 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027389 B = 0.006051 C = 0.005419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.056906 B = 4626.093394 C = 5166.179931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.066 0.934 4 C -0.529 4.529 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.574 5.574 13 C 0.082 3.918 14 C 0.552 3.448 15 O -0.528 6.528 16 C -0.220 4.220 17 C 0.203 3.797 18 F -0.104 7.104 19 C -0.221 4.221 20 C 0.170 3.830 21 N -0.518 5.518 22 C 0.368 3.632 23 F -0.092 7.092 24 H 0.013 0.987 25 H 0.096 0.904 26 H 0.031 0.969 27 H 0.264 0.736 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.161 0.839 32 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.151 -8.728 -13.746 17.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.083 0.917 4 C -0.567 4.567 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.303 5.303 13 C -0.061 4.061 14 C 0.335 3.665 15 O -0.405 6.405 16 C -0.228 4.228 17 C 0.175 3.825 18 F -0.082 7.082 19 C -0.242 4.242 20 C 0.014 3.986 21 N -0.234 5.234 22 C 0.214 3.786 23 F -0.070 7.070 24 H 0.033 0.967 25 H 0.114 0.886 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.179 0.821 32 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 4.650 -7.928 -14.133 16.858 hybrid contribution 0.719 -0.468 1.752 1.950 sum 5.369 -8.396 -12.381 15.894 Atomic orbital electron populations 1.22087 0.97679 0.99642 1.01088 1.19082 0.91229 0.94556 0.79339 0.91657 1.21276 1.32129 1.13205 0.90112 0.92109 1.24887 0.94828 0.94972 0.98978 1.69876 1.36061 1.22536 1.23906 0.86462 0.78685 0.79831 0.82215 1.20537 1.21051 1.19892 1.48270 1.47420 1.11728 1.22925 1.21639 0.98739 0.82964 1.02806 1.17540 0.80398 0.86514 0.82027 1.90799 1.58062 1.15925 1.75749 1.21103 0.97420 1.06126 0.98160 1.17698 0.87653 0.93613 0.83534 1.91655 1.73714 1.93699 1.49129 1.22179 1.04471 1.05069 0.92479 1.22518 0.86739 0.91727 0.97653 1.67116 1.17157 1.11327 1.27757 1.17759 0.82155 0.90475 0.88209 1.91708 1.41891 1.77078 1.96370 0.96746 0.88572 0.94982 0.92561 0.93356 0.93551 0.89243 0.82092 0.80145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.97 37.16 0.33 -3.19 16 2 C 0.26 6.64 2.64 -69.08 -0.18 6.46 16 3 H 0.07 1.95 6.90 -51.93 -0.36 1.59 16 4 C -0.53 -14.25 7.99 -34.44 -0.28 -14.52 16 5 H 0.06 1.61 7.33 -52.49 -0.38 1.22 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -24.94 11.32 55.43 0.63 -24.31 16 8 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.57 -12.68 2.75 -176.49 -0.49 -13.16 16 13 C 0.08 1.45 9.25 59.85 0.55 2.00 16 14 C 0.55 12.16 6.50 -12.46 -0.08 12.08 16 15 O -0.53 -13.70 16.43 5.29 0.09 -13.61 16 16 C -0.22 -3.77 3.94 -104.70 -0.41 -4.18 16 17 C 0.20 2.89 6.95 -38.61 -0.27 2.62 16 18 F -0.10 -1.67 16.93 2.25 0.04 -1.63 16 19 C -0.22 -2.08 10.09 -39.43 -0.40 -2.48 16 20 C 0.17 1.52 11.16 -17.52 -0.20 1.32 16 21 N -0.52 -6.72 10.36 -13.25 -0.14 -6.86 16 22 C 0.37 5.79 8.42 -16.89 -0.14 5.65 16 23 F -0.09 -1.58 16.86 2.25 0.04 -1.54 16 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.10 2.52 6.07 -51.93 -0.32 2.20 16 26 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.70 6.55 -51.93 -0.34 0.36 16 30 H 0.09 1.62 7.02 -51.93 -0.36 1.26 16 31 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 32 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 288.96 15.07 4.35 4.35 Total: -1.00 -32.07 288.96 -4.65 -36.71 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: -2.99 Total: -3.31 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -1.16 Total: 7.45 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.00 Total: -44.33 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.09 Total: -13.61 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.08 Total: -3.17 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.07 -4.65 -36.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338414430.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.862 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds