Wall clock time and date at job start Mon Mar 30 2020 01:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00513 * 2 1 4 4 H 1.48508 * 109.46847 * 270.00165 * 3 2 1 5 5 H 1.48502 * 109.47027 * 29.99709 * 3 2 1 6 6 H 1.48499 * 109.47445 * 150.00296 * 3 2 1 7 7 C 1.37884 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00062 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99808 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.46810 * 180.02562 * 9 7 2 11 11 C 1.34781 * 120.00089 * 179.97438 * 10 9 7 12 12 O 1.21592 * 119.99639 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00267 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00181 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47170 * 180.02562 * 14 13 11 16 16 N 1.46504 * 109.47172 * 179.97438 * 15 14 13 17 17 C 1.34771 * 124.17359 * 89.99722 * 16 15 14 18 18 O 1.21225 * 127.16028 * 0.06992 * 17 16 15 19 19 C 1.51585 * 105.68254 * 180.02562 * 17 16 15 20 20 N 1.47317 * 103.59313 * 359.97438 * 19 17 16 21 21 C 1.33785 * 124.17976 * 270.30611 * 16 15 14 22 22 O 1.21542 * 123.77022 * 359.97438 * 21 16 15 23 23 H 0.96996 * 119.99628 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47345 * 60.00219 * 9 7 2 25 25 H 1.09000 * 109.47165 * 299.99791 * 9 7 2 26 26 H 0.96999 * 120.00432 * 0.02562 * 10 9 7 27 27 H 0.97003 * 119.99875 * 0.02562 * 13 11 10 28 28 H 1.09000 * 109.47189 * 59.99866 * 14 13 11 29 29 H 1.09003 * 109.46609 * 300.00266 * 14 13 11 30 30 H 1.09000 * 109.47340 * 59.99755 * 15 14 13 31 31 H 1.08998 * 109.46969 * 299.99408 * 15 14 13 32 32 H 1.08998 * 110.59926 * 241.47169 * 19 17 16 33 33 H 1.09003 * 110.73128 * 118.58762 * 19 17 16 34 34 H 0.97001 * 126.68790 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9997 -2.5754 0.0001 11 6 5.3248 -2.8218 -0.0009 12 8 6.1150 -1.8976 -0.0014 13 7 5.7740 -4.0925 -0.0013 14 6 7.2143 -4.3603 -0.0018 15 6 7.4520 -5.8717 -0.0029 16 7 8.8924 -6.1395 -0.0040 17 6 9.6374 -6.2785 1.1105 18 8 9.2565 -6.2093 2.2592 19 6 11.0506 -6.5404 0.6286 20 7 10.9259 -6.5169 -0.8391 21 6 9.6317 -6.2704 -1.1113 22 8 9.1833 -6.1809 -2.2375 23 1 -0.4849 0.8400 0.0004 24 1 3.8752 -0.6798 0.8895 25 1 3.8745 -0.6810 -0.8905 26 1 3.3694 -3.3127 0.0001 27 1 5.1436 -4.8298 -0.0013 28 1 7.6657 -3.9217 0.8881 29 1 7.6651 -3.9212 -0.8919 30 1 7.0007 -6.3099 -0.8930 31 1 7.0012 -6.3110 0.8870 32 1 11.3968 -7.5165 0.9681 33 1 11.7260 -5.7555 0.9690 34 1 11.6388 -6.6486 -1.4835 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344004268.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:40 Heat of formation + Delta-G solvation = -66.426871 kcal Electronic energy + Delta-G solvation = -19956.167230 eV Core-core repulsion = 16504.472237 eV Total energy + Delta-G solvation = -3451.694992 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.71995 -39.34826 -38.96367 -36.49101 -36.15825 -34.33534 -33.88376 -32.30477 -29.75820 -28.15832 -27.42818 -24.02520 -23.27104 -21.93437 -20.94248 -20.24998 -18.57196 -18.14904 -17.61047 -17.06129 -16.34412 -16.09527 -15.73275 -15.54593 -15.36008 -14.60102 -14.50011 -14.23699 -14.17218 -14.03976 -13.66594 -13.14432 -12.51285 -12.39717 -12.28833 -11.64864 -11.39141 -10.96337 -10.73403 -10.67369 -10.25230 -9.97146 -9.94084 -9.62370 -9.43434 -8.92542 -8.73110 -8.01152 -6.18215 -4.19965 1.20743 1.68908 2.56833 2.67010 3.25736 3.31193 3.38085 3.46409 3.56197 3.79786 4.30143 4.37142 4.47963 4.56859 4.64676 4.93210 5.02607 5.06315 5.15483 5.17569 5.66678 5.80883 6.28219 6.59580 6.65444 6.75328 6.93238 7.14448 7.25142 7.41503 7.55597 7.68712 8.30239 8.69936 8.83232 9.20107 9.43144 10.93804 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.041514 B = 0.003115 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.308305 B = 8986.032322 C = 9035.001911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.721 5.721 11 C 0.697 3.303 12 O -0.602 6.602 13 N -0.752 5.752 14 C 0.129 3.871 15 C 0.109 3.891 16 N -0.573 5.573 17 C 0.519 3.481 18 O -0.462 6.462 19 C 0.063 3.937 20 N -0.730 5.730 21 C 0.700 3.300 22 O -0.535 6.535 23 H 0.267 0.733 24 H 0.024 0.976 25 H 0.019 0.981 26 H 0.393 0.607 27 H 0.395 0.605 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.599 -17.462 0.869 28.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.115 3.885 10 N -0.373 5.373 11 C 0.397 3.603 12 O -0.481 6.481 13 N -0.410 5.410 14 C 0.002 3.998 15 C -0.013 4.013 16 N -0.320 5.320 17 C 0.306 3.694 18 O -0.331 6.331 19 C -0.065 4.065 20 N -0.395 5.395 21 C 0.401 3.599 22 O -0.408 6.408 23 H 0.077 0.923 24 H 0.041 0.959 25 H 0.037 0.963 26 H 0.226 0.774 27 H 0.229 0.771 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 22.572 -16.333 0.923 27.877 hybrid contribution 0.091 0.135 -0.271 0.316 sum 22.663 -16.198 0.652 27.864 Atomic orbital electron populations 1.69879 1.06215 1.27405 1.49600 1.24781 0.94787 0.99170 0.93897 0.86810 0.80607 0.83175 0.79065 1.19846 1.20941 1.18428 1.21096 0.88537 0.95209 1.53155 0.90261 1.19376 0.94837 0.77564 0.96694 1.45374 1.03554 1.11133 1.77227 1.16037 0.83644 0.82400 0.78233 1.90873 1.55418 1.43110 1.58708 1.44822 1.06601 1.07009 1.82579 1.21261 0.82105 0.93345 1.03064 1.21816 0.76717 0.97038 1.05726 1.46205 1.11119 1.66415 1.08268 1.20947 0.88425 0.75140 0.84854 1.90867 1.77907 1.46489 1.17791 1.22480 0.96177 1.06480 0.81320 1.45418 1.09218 1.77083 1.07779 1.15876 0.82067 0.77758 0.84227 1.91067 1.74391 1.54964 1.20344 0.92282 0.95855 0.96323 0.77365 0.77138 0.91393 0.91132 0.87672 0.87844 0.85771 0.85686 0.71336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.96 55.43 0.77 -26.04 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.54 -15.10 9.83 -34.44 -0.34 -15.44 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 9 C 0.24 6.03 4.50 -5.19 -0.02 6.01 16 10 N -0.72 -15.11 5.55 -66.41 -0.37 -15.47 16 11 C 0.70 14.12 8.57 -86.91 -0.74 13.38 16 12 O -0.60 -14.73 16.34 5.28 0.09 -14.64 16 13 N -0.75 -10.88 5.56 -65.23 -0.36 -11.24 16 14 C 0.13 1.67 6.00 -4.04 -0.02 1.65 16 15 C 0.11 1.02 5.81 -4.04 -0.02 0.99 16 16 N -0.57 -5.12 2.60 -120.73 -0.31 -5.43 16 17 C 0.52 4.10 8.32 -10.55 -0.09 4.01 16 18 O -0.46 -5.14 17.76 5.60 0.10 -5.04 16 19 C 0.06 0.20 7.97 -4.31 -0.03 0.17 16 20 N -0.73 -3.49 6.58 -65.73 -0.43 -3.93 16 21 C 0.70 6.54 8.62 -88.02 -0.76 5.79 16 22 O -0.54 -7.16 17.48 5.33 0.09 -7.07 16 23 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 25 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 26 H 0.39 7.13 8.34 -40.82 -0.34 6.79 16 27 H 0.40 4.32 8.49 -40.82 -0.35 3.97 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.11 0.91 7.87 -51.93 -0.41 0.51 16 31 H 0.10 0.83 8.00 -51.93 -0.42 0.42 16 32 H 0.12 0.07 8.14 -51.93 -0.42 -0.35 16 33 H 0.13 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.44 1.07 8.96 -40.82 -0.37 0.70 16 LS Contribution 304.29 15.07 4.59 4.59 Total: -1.00 -38.44 304.29 -6.55 -44.99 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -3.91 Total: 3.47 kcal Atomic # 6 Polarization: 20.80 SS G_CDS: -2.13 Total: 18.67 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -0.70 Total: -62.12 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: 0.28 Total: -26.75 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -38.44 -6.55 -44.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344004268.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.433 kcal (2) G-P(sol) polarization free energy of solvation -38.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds