Wall clock time and date at job start Mon Mar 30 2020 01:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00513 * 2 1 4 4 H 1.48508 * 109.46847 * 270.00165 * 3 2 1 5 5 H 1.48502 * 109.47027 * 29.99709 * 3 2 1 6 6 H 1.48499 * 109.47445 * 150.00296 * 3 2 1 7 7 C 1.37884 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00062 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99808 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.46810 * 180.02562 * 9 7 2 11 11 C 1.34781 * 120.00089 * 179.97438 * 10 9 7 12 12 O 1.21592 * 119.99639 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00267 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00181 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47170 * 180.02562 * 14 13 11 16 16 N 1.46504 * 109.47172 * 179.97438 * 15 14 13 17 17 C 1.34771 * 124.17359 * 89.99722 * 16 15 14 18 18 O 1.21225 * 127.16028 * 0.06992 * 17 16 15 19 19 C 1.51585 * 105.68254 * 180.02562 * 17 16 15 20 20 N 1.47317 * 103.59313 * 359.97438 * 19 17 16 21 21 C 1.33785 * 124.17976 * 270.30611 * 16 15 14 22 22 O 1.21542 * 123.77022 * 359.97438 * 21 16 15 23 23 H 0.96996 * 119.99628 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47345 * 60.00219 * 9 7 2 25 25 H 1.09000 * 109.47165 * 299.99791 * 9 7 2 26 26 H 0.96999 * 120.00432 * 0.02562 * 10 9 7 27 27 H 0.97003 * 119.99875 * 0.02562 * 13 11 10 28 28 H 1.09000 * 109.47189 * 59.99866 * 14 13 11 29 29 H 1.09003 * 109.46609 * 300.00266 * 14 13 11 30 30 H 1.09000 * 109.47340 * 59.99755 * 15 14 13 31 31 H 1.08998 * 109.46969 * 299.99408 * 15 14 13 32 32 H 1.08998 * 110.59926 * 241.47169 * 19 17 16 33 33 H 1.09003 * 110.73128 * 118.58762 * 19 17 16 34 34 H 0.97001 * 126.68790 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9997 -2.5754 0.0001 11 6 5.3248 -2.8218 -0.0009 12 8 6.1150 -1.8976 -0.0014 13 7 5.7740 -4.0925 -0.0013 14 6 7.2143 -4.3603 -0.0018 15 6 7.4520 -5.8717 -0.0029 16 7 8.8924 -6.1395 -0.0040 17 6 9.6374 -6.2785 1.1105 18 8 9.2565 -6.2093 2.2592 19 6 11.0506 -6.5404 0.6286 20 7 10.9259 -6.5169 -0.8391 21 6 9.6317 -6.2704 -1.1113 22 8 9.1833 -6.1809 -2.2375 23 1 -0.4849 0.8400 0.0004 24 1 3.8752 -0.6798 0.8895 25 1 3.8745 -0.6810 -0.8905 26 1 3.3694 -3.3127 0.0001 27 1 5.1436 -4.8298 -0.0013 28 1 7.6657 -3.9217 0.8881 29 1 7.6651 -3.9212 -0.8919 30 1 7.0007 -6.3099 -0.8930 31 1 7.0012 -6.3110 0.8870 32 1 11.3968 -7.5165 0.9681 33 1 11.7260 -5.7555 0.9690 34 1 11.6388 -6.6486 -1.4835 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344004268.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:40 Heat of formation + Delta-G solvation = -100.803203 kcal Electronic energy + Delta-G solvation = -19957.657899 eV Core-core repulsion = 16504.472237 eV Total energy + Delta-G solvation = -3453.185662 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.35204 -40.96112 -39.68766 -37.23121 -37.17677 -36.11551 -35.06986 -34.36137 -30.98890 -29.36785 -28.47715 -25.18115 -23.94913 -23.73901 -22.10498 -21.45746 -19.98233 -19.02474 -18.42554 -18.25098 -17.70289 -17.37165 -16.79765 -16.62935 -16.28746 -16.13247 -15.48965 -15.41256 -15.29098 -15.05028 -14.91037 -14.38934 -14.31407 -14.16459 -13.43475 -13.03354 -12.79523 -12.63457 -12.16372 -11.92451 -11.65549 -11.43625 -11.34930 -11.04177 -10.91454 -10.43108 -10.41260 -9.73040 -8.39396 -6.46126 0.60255 1.00545 1.34108 1.35937 1.49411 1.80450 1.95830 2.14287 2.29113 2.29756 2.96243 3.04821 3.46431 3.63410 3.67191 4.16497 4.20972 4.33557 4.34884 4.54221 4.68601 4.76744 4.82173 5.04932 5.24809 5.35505 5.52114 5.83250 5.94060 5.99464 6.25226 6.35550 6.55835 7.07932 7.12879 7.23318 7.60238 8.75362 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.041514 B = 0.003115 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.308305 B = 8986.032322 C = 9035.001911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.251 3.749 10 N -0.718 5.718 11 C 0.696 3.304 12 O -0.645 6.645 13 N -0.728 5.728 14 C 0.134 3.866 15 C 0.116 3.884 16 N -0.578 5.578 17 C 0.514 3.486 18 O -0.499 6.499 19 C 0.075 3.925 20 N -0.708 5.708 21 C 0.694 3.306 22 O -0.584 6.584 23 H 0.273 0.727 24 H 0.011 0.989 25 H 0.009 0.991 26 H 0.407 0.593 27 H 0.416 0.584 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.164 0.836 33 H 0.156 0.844 34 H 0.455 0.545 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.739 -18.463 1.210 30.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.079 0.921 9 C 0.126 3.874 10 N -0.372 5.372 11 C 0.396 3.604 12 O -0.527 6.527 13 N -0.386 5.386 14 C 0.008 3.992 15 C -0.006 4.006 16 N -0.325 5.325 17 C 0.303 3.697 18 O -0.370 6.370 19 C -0.051 4.051 20 N -0.373 5.373 21 C 0.394 3.606 22 O -0.460 6.460 23 H 0.082 0.918 24 H 0.029 0.971 25 H 0.027 0.973 26 H 0.243 0.757 27 H 0.253 0.747 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.131 0.869 31 H 0.138 0.862 32 H 0.181 0.819 33 H 0.173 0.827 34 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges 24.760 -17.426 1.274 30.304 hybrid contribution -0.538 0.345 -0.354 0.731 sum 24.222 -17.081 0.920 29.653 Atomic orbital electron populations 1.69974 1.07647 1.28635 1.50723 1.25572 0.95542 1.02626 0.93582 0.85861 0.79246 0.79344 0.79461 1.19009 1.19683 1.18548 1.21270 0.89782 0.94674 1.52609 0.92103 1.18974 0.93127 0.79715 0.95565 1.45072 1.04388 1.10083 1.77650 1.16157 0.82838 0.83598 0.77850 1.90841 1.56306 1.45042 1.60550 1.44560 1.07882 1.05630 1.80560 1.21278 0.80537 0.95992 1.01437 1.21697 0.77893 0.94080 1.06963 1.46301 1.10988 1.66265 1.08910 1.21717 0.90048 0.73894 0.83993 1.90854 1.78903 1.48214 1.19014 1.22749 0.93196 1.09566 0.79596 1.45395 1.07757 1.75105 1.09076 1.16072 0.83294 0.77699 0.83493 1.91035 1.75534 1.57399 1.22034 0.91805 0.97094 0.97302 0.75721 0.74719 0.92683 0.93070 0.86857 0.86176 0.81868 0.82697 0.69755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.13 13.96 21.45 0.30 -55.83 16 2 C 0.03 1.55 5.47 84.66 0.46 2.02 16 3 Si 0.94 44.86 27.47 68.60 1.88 46.75 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.26 -12.48 6.54 99.48 0.65 -11.83 16 7 C -0.55 -30.60 9.83 25.60 0.25 -30.35 16 8 H 0.06 3.56 7.84 -2.91 -0.02 3.54 16 9 C 0.25 12.71 4.50 85.63 0.38 13.09 16 10 N -0.72 -29.92 5.55 -482.28 -2.68 -32.60 16 11 C 0.70 28.01 8.57 179.05 1.53 29.54 16 12 O -0.64 -31.77 16.34 -4.01 -0.07 -31.83 16 13 N -0.73 -20.46 5.56 -478.53 -2.66 -23.12 16 14 C 0.13 3.43 6.00 86.38 0.52 3.95 16 15 C 0.12 2.04 5.81 86.38 0.50 2.54 16 16 N -0.58 -9.54 2.60 -773.13 -2.01 -11.55 16 17 C 0.51 7.05 8.32 87.94 0.73 7.78 16 18 O -0.50 -10.40 17.76 -2.86 -0.05 -10.45 16 19 C 0.07 0.20 7.97 85.76 0.68 0.88 16 20 N -0.71 -4.78 6.58 -480.29 -3.16 -7.95 16 21 C 0.69 12.02 8.62 179.44 1.55 13.57 16 22 O -0.58 -15.43 17.48 -3.85 -0.07 -15.50 16 23 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 24 H 0.01 0.59 7.20 -2.39 -0.02 0.58 16 25 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 26 H 0.41 14.52 8.34 -92.71 -0.77 13.75 16 27 H 0.42 8.40 8.49 -92.71 -0.79 7.62 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.11 1.84 7.87 -2.39 -0.02 1.82 16 31 H 0.12 1.73 8.00 -2.39 -0.02 1.71 16 32 H 0.16 -0.65 8.14 -2.39 -0.02 -0.66 16 33 H 0.16 -0.31 8.14 -2.39 -0.02 -0.33 16 34 H 0.46 0.84 8.96 -92.71 -0.83 0.01 16 Total: -1.00 -84.94 304.29 -3.17 -88.10 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -1.27 Total: 10.96 kcal Atomic # 6 Polarization: 36.40 SS G_CDS: 6.62 Total: 43.02 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -10.21 Total: -131.05 kcal Atomic # 8 Polarization: -57.60 SS G_CDS: -0.18 Total: -57.78 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.75 kcal Total: -84.94 -3.17 -88.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344004268.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.699 kcal (2) G-P(sol) polarization free energy of solvation -84.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds