Wall clock time and date at job start Mon Mar 30 2020 01:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99822 * 2 1 4 4 H 1.48506 * 109.47076 * 240.00153 * 3 2 1 5 5 H 1.48497 * 109.46890 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47126 * 120.00196 * 3 2 1 7 7 C 1.37871 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99971 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99978 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47487 * 300.00014 * 9 7 2 11 11 O 1.45204 * 109.47323 * 180.02562 * 9 7 2 12 12 C 1.34228 * 117.00194 * 150.00089 * 11 9 7 13 13 O 1.20829 * 119.99830 * 0.02562 * 12 11 9 14 14 C 1.50694 * 120.00118 * 180.02562 * 12 11 9 15 15 C 1.52587 * 109.22643 * 301.23501 * 14 12 11 16 16 C 1.53098 * 109.95696 * 169.00264 * 15 14 12 17 17 S 1.81742 * 108.83989 * 63.02583 * 16 15 14 18 18 C 1.81747 * 102.22445 * 306.73458 * 17 16 15 19 19 C 1.52579 * 109.22735 * 180.02562 * 14 12 11 20 20 C 1.53003 * 109.47004 * 60.00394 * 9 7 2 21 21 C 1.53001 * 117.51964 * 116.28325 * 20 9 7 22 22 C 1.52999 * 60.00190 * 107.47982 * 21 20 9 23 23 H 0.97001 * 120.00567 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.22590 * 60.59526 * 14 12 11 25 25 H 1.08998 * 109.39038 * 289.15457 * 15 14 12 26 26 H 1.09006 * 109.38764 * 48.85652 * 15 14 12 27 27 H 1.09003 * 109.57632 * 303.22313 * 16 15 14 28 28 H 1.08995 * 109.57734 * 182.83796 * 16 15 14 29 29 H 1.09005 * 109.57567 * 293.46044 * 18 17 16 30 30 H 1.08998 * 109.57672 * 173.07568 * 18 17 16 31 31 H 1.08997 * 109.39066 * 311.13909 * 19 14 12 32 32 H 1.08997 * 109.39736 * 70.84606 * 19 14 12 33 33 H 1.09002 * 115.54973 * 330.58108 * 20 9 7 34 34 H 1.09001 * 117.49733 * 214.97413 * 21 20 9 35 35 H 1.08995 * 117.49577 * 359.97438 * 21 20 9 36 36 H 1.09004 * 117.50150 * 252.51496 * 22 21 20 37 37 H 1.09004 * 117.49681 * 107.48417 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 2.1946 -3.6027 -0.0005 12 6 1.8034 -4.7390 0.5974 13 8 0.7086 -4.8093 1.1037 14 6 2.7297 -5.9270 0.6374 15 6 3.0874 -6.3334 -0.7892 16 6 4.2303 -7.3519 -0.7714 17 16 3.6659 -8.8525 0.0847 18 6 3.0527 -8.1884 1.6614 19 6 2.0421 -7.0758 1.3692 20 6 0.3710 -2.5799 -1.2495 21 6 0.6802 -3.6846 -2.2619 22 6 -0.5645 -3.7838 -1.3779 23 1 -0.4851 0.8400 0.0004 24 1 3.6400 -5.6546 1.1712 25 1 2.2148 -6.7769 -1.2687 26 1 3.3974 -5.4514 -1.3498 27 1 5.0865 -6.9310 -0.2442 28 1 4.5145 -7.5998 -1.7940 29 1 3.8859 -7.7836 2.2360 30 1 2.5675 -8.9829 2.2283 31 1 1.6262 -6.7096 2.3077 32 1 1.2380 -7.4708 0.7484 33 1 0.0185 -1.6248 -1.6388 34 1 0.5312 -3.4562 -3.3173 35 1 1.5111 -4.3538 -2.0385 36 1 -0.5528 -4.5183 -0.5726 37 1 -1.5326 -3.6205 -1.8516 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344936363.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:13 Heat of formation + Delta-G solvation = -78.480389 kcal Electronic energy + Delta-G solvation = -19412.877790 eV Core-core repulsion = 16474.660581 eV Total energy + Delta-G solvation = -2938.217209 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.11672 -37.24159 -35.90255 -34.78319 -32.85563 -31.63487 -28.66984 -27.44267 -23.56683 -23.09220 -22.15172 -21.44249 -20.01411 -19.01402 -17.18976 -17.03712 -16.62143 -15.98673 -15.37711 -14.71560 -14.68819 -14.09907 -13.85767 -13.48682 -13.37639 -13.00751 -12.78699 -12.46737 -12.34069 -11.65886 -11.55992 -11.37765 -11.12812 -11.06103 -10.96733 -10.61955 -10.47298 -10.34514 -10.11834 -9.90320 -9.62243 -9.51550 -9.16549 -8.58185 -8.48387 -7.81600 -6.22536 -4.30377 1.64217 2.39316 2.85822 3.23251 3.26986 3.28435 3.49204 4.28212 4.53770 4.64319 4.77032 4.81795 4.91267 5.06146 5.09587 5.23202 5.31464 5.41387 5.53801 5.70891 5.80521 5.83019 5.87033 6.05506 6.09323 6.09857 6.16302 6.41352 6.65990 6.83839 6.97665 7.15142 7.52775 7.54225 7.78901 8.07398 8.55145 8.82077 9.34370 10.84486 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.029765 B = 0.004947 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.484503 B = 5658.410059 C = 5881.205853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.909 3.091 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.069 0.931 9 C 0.248 3.752 10 H 0.051 0.949 11 O -0.350 6.350 12 C 0.457 3.543 13 O -0.513 6.513 14 C -0.090 4.090 15 C -0.116 4.116 16 C -0.075 4.075 17 S -0.278 6.278 18 C -0.076 4.076 19 C -0.108 4.108 20 C -0.114 4.114 21 C -0.197 4.197 22 C -0.207 4.207 23 H 0.267 0.733 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.264 -12.862 -0.385 14.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.138 4.138 3 Si 0.736 3.264 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.087 0.913 9 C 0.196 3.804 10 H 0.069 0.931 11 O -0.266 6.266 12 C 0.300 3.700 13 O -0.403 6.403 14 C -0.109 4.109 15 C -0.155 4.155 16 C -0.223 4.223 17 S -0.052 6.052 18 C -0.225 4.225 19 C -0.147 4.147 20 C -0.132 4.132 21 C -0.234 4.234 22 C -0.244 4.244 23 H 0.077 0.923 24 H 0.121 0.879 25 H 0.100 0.900 26 H 0.112 0.888 27 H 0.105 0.895 28 H 0.127 0.873 29 H 0.103 0.897 30 H 0.126 0.874 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.144 0.856 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.798 -13.763 -0.602 14.946 hybrid contribution 0.180 2.172 0.375 2.211 sum 5.978 -11.591 -0.227 13.044 Atomic orbital electron populations 1.69981 1.05902 1.27477 1.48738 1.24899 0.95034 0.99268 0.94587 0.86375 0.79362 0.81753 0.78910 1.19898 1.21014 1.19969 1.20900 0.93890 0.88372 1.52722 0.91265 1.20151 0.85967 0.80329 0.93962 0.93099 1.86483 1.49245 1.22061 1.68789 1.23124 0.86462 0.85010 0.75435 1.90581 1.22503 1.83492 1.43714 1.20988 0.99007 0.92280 0.98665 1.21732 0.98672 0.99800 0.95273 1.23463 1.00360 0.94953 1.03515 1.86828 1.81417 1.16976 1.19992 1.23469 1.01565 1.01470 0.95950 1.21606 0.97581 0.93195 1.02312 1.23003 0.98780 0.93510 0.97955 1.22828 0.99249 1.05290 0.96041 1.23130 0.93784 1.04478 1.03034 0.92312 0.87934 0.89966 0.88773 0.89463 0.87342 0.89657 0.87424 0.89401 0.89801 0.85566 0.90416 0.89842 0.88697 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.58 11.66 55.43 0.65 -23.94 16 2 C 0.07 1.75 5.16 -17.82 -0.09 1.65 16 3 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.52 -14.16 8.90 -34.44 -0.31 -14.47 16 8 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 9 C 0.25 6.40 2.39 -27.88 -0.07 6.33 16 10 H 0.05 1.48 7.16 -51.93 -0.37 1.10 16 11 O -0.35 -7.79 8.12 -39.25 -0.32 -8.11 16 12 C 0.46 8.87 6.09 36.00 0.22 9.09 16 13 O -0.51 -11.28 12.70 -18.75 -0.24 -11.52 16 14 C -0.09 -1.25 2.36 -92.20 -0.22 -1.47 16 15 C -0.12 -1.43 4.75 -26.89 -0.13 -1.55 16 16 C -0.07 -0.76 6.45 37.21 0.24 -0.52 16 17 S -0.28 -3.09 22.33 -107.50 -2.40 -5.49 16 18 C -0.08 -0.77 6.46 37.22 0.24 -0.53 16 19 C -0.11 -1.34 4.50 -26.89 -0.12 -1.46 16 20 C -0.11 -2.76 5.23 -90.61 -0.47 -3.23 16 21 C -0.20 -4.02 9.74 -26.73 -0.26 -4.28 16 22 C -0.21 -4.47 9.87 -26.73 -0.26 -4.73 16 23 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.10 1.30 8.08 -51.93 -0.42 0.88 16 25 H 0.08 1.05 8.06 -51.93 -0.42 0.64 16 26 H 0.09 1.23 7.40 -51.93 -0.38 0.84 16 27 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.15 7.69 -51.93 -0.40 0.75 16 32 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 33 H 0.13 3.35 6.55 -51.93 -0.34 3.01 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 35 H 0.08 1.62 5.99 -51.93 -0.31 1.31 16 36 H 0.09 2.12 5.56 -51.93 -0.29 1.83 16 37 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 LS Contribution 307.09 15.07 4.63 4.63 Total: -1.00 -28.96 307.09 -9.37 -38.33 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.43 Total: 5.69 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -1.23 Total: -15.17 kcal Atomic # 7 Polarization: -24.58 SS G_CDS: 0.65 Total: -23.94 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.56 Total: -19.63 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.40 Total: -5.49 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.96 -9.37 -38.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344936363.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.154 kcal (2) G-P(sol) polarization free energy of solvation -28.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds