Wall clock time and date at job start Mon Mar 30 2020 01:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99822 * 2 1 4 4 H 1.48506 * 109.47076 * 240.00153 * 3 2 1 5 5 H 1.48497 * 109.46890 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47126 * 120.00196 * 3 2 1 7 7 C 1.37871 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99971 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99978 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47487 * 300.00014 * 9 7 2 11 11 O 1.45204 * 109.47323 * 180.02562 * 9 7 2 12 12 C 1.34228 * 117.00194 * 150.00089 * 11 9 7 13 13 O 1.20829 * 119.99830 * 0.02562 * 12 11 9 14 14 C 1.50694 * 120.00118 * 180.02562 * 12 11 9 15 15 C 1.52587 * 109.22643 * 301.23501 * 14 12 11 16 16 C 1.53098 * 109.95696 * 169.00264 * 15 14 12 17 17 S 1.81742 * 108.83989 * 63.02583 * 16 15 14 18 18 C 1.81747 * 102.22445 * 306.73458 * 17 16 15 19 19 C 1.52579 * 109.22735 * 180.02562 * 14 12 11 20 20 C 1.53003 * 109.47004 * 60.00394 * 9 7 2 21 21 C 1.53001 * 117.51964 * 116.28325 * 20 9 7 22 22 C 1.52999 * 60.00190 * 107.47982 * 21 20 9 23 23 H 0.97001 * 120.00567 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.22590 * 60.59526 * 14 12 11 25 25 H 1.08998 * 109.39038 * 289.15457 * 15 14 12 26 26 H 1.09006 * 109.38764 * 48.85652 * 15 14 12 27 27 H 1.09003 * 109.57632 * 303.22313 * 16 15 14 28 28 H 1.08995 * 109.57734 * 182.83796 * 16 15 14 29 29 H 1.09005 * 109.57567 * 293.46044 * 18 17 16 30 30 H 1.08998 * 109.57672 * 173.07568 * 18 17 16 31 31 H 1.08997 * 109.39066 * 311.13909 * 19 14 12 32 32 H 1.08997 * 109.39736 * 70.84606 * 19 14 12 33 33 H 1.09002 * 115.54973 * 330.58108 * 20 9 7 34 34 H 1.09001 * 117.49733 * 214.97413 * 21 20 9 35 35 H 1.08995 * 117.49577 * 359.97438 * 21 20 9 36 36 H 1.09004 * 117.50150 * 252.51496 * 22 21 20 37 37 H 1.09004 * 117.49681 * 107.48417 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 2.1946 -3.6027 -0.0005 12 6 1.8034 -4.7390 0.5974 13 8 0.7086 -4.8093 1.1037 14 6 2.7297 -5.9270 0.6374 15 6 3.0874 -6.3334 -0.7892 16 6 4.2303 -7.3519 -0.7714 17 16 3.6659 -8.8525 0.0847 18 6 3.0527 -8.1884 1.6614 19 6 2.0421 -7.0758 1.3692 20 6 0.3710 -2.5799 -1.2495 21 6 0.6802 -3.6846 -2.2619 22 6 -0.5645 -3.7838 -1.3779 23 1 -0.4851 0.8400 0.0004 24 1 3.6400 -5.6546 1.1712 25 1 2.2148 -6.7769 -1.2687 26 1 3.3974 -5.4514 -1.3498 27 1 5.0865 -6.9310 -0.2442 28 1 4.5145 -7.5998 -1.7940 29 1 3.8859 -7.7836 2.2360 30 1 2.5675 -8.9829 2.2283 31 1 1.6262 -6.7096 2.3077 32 1 1.2380 -7.4708 0.7484 33 1 0.0185 -1.6248 -1.6388 34 1 0.5312 -3.4562 -3.3173 35 1 1.5111 -4.3538 -2.0385 36 1 -0.5528 -4.5183 -0.5726 37 1 -1.5326 -3.6205 -1.8516 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344936363.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:13 Heat of formation + Delta-G solvation = -92.755352 kcal Electronic energy + Delta-G solvation = -19413.496798 eV Core-core repulsion = 16474.660581 eV Total energy + Delta-G solvation = -2938.836218 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.73646 -38.76386 -37.29328 -36.53408 -34.88642 -32.54650 -30.28273 -28.90020 -25.44736 -24.06936 -23.55314 -23.12630 -21.46492 -20.74089 -18.90731 -18.47313 -17.93926 -17.63644 -17.16730 -16.40246 -15.76312 -15.56393 -15.06636 -14.74129 -14.57147 -14.25974 -13.89770 -13.84721 -13.68097 -13.42520 -13.21823 -12.93426 -12.79078 -12.47402 -12.32914 -12.23623 -12.12698 -11.98968 -11.43646 -11.37240 -11.35115 -11.03268 -10.66035 -10.49309 -10.44205 -8.67052 -8.27192 -6.44014 0.82293 1.29874 1.41612 1.44783 1.52565 1.57469 1.94517 2.40644 3.01016 3.13452 3.48945 3.59221 3.72229 3.91188 4.05609 4.12628 4.22190 4.24833 4.28072 4.30358 4.45403 4.57996 4.72668 4.75584 4.82762 4.88331 4.94777 4.97829 5.08027 5.14282 5.23635 5.28818 5.51004 5.55975 5.89335 6.11319 6.60965 6.96979 7.26902 8.79861 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.029765 B = 0.004947 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.484503 B = 5658.410059 C = 5881.205853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.020 3.980 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.068 0.932 9 C 0.255 3.745 10 H 0.004 0.996 11 O -0.354 6.354 12 C 0.451 3.549 13 O -0.543 6.543 14 C -0.081 4.081 15 C -0.111 4.111 16 C -0.065 4.065 17 S -0.297 6.297 18 C -0.066 4.066 19 C -0.103 4.103 20 C -0.144 4.144 21 C -0.167 4.167 22 C -0.201 4.201 23 H 0.269 0.731 24 H 0.122 0.878 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.125 0.875 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.014 -13.701 -1.081 15.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.180 4.180 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.086 0.914 9 C 0.202 3.798 10 H 0.022 0.978 11 O -0.270 6.270 12 C 0.295 3.705 13 O -0.434 6.434 14 C -0.100 4.100 15 C -0.150 4.150 16 C -0.213 4.213 17 S -0.072 6.072 18 C -0.214 4.214 19 C -0.142 4.142 20 C -0.163 4.163 21 C -0.204 4.204 22 C -0.237 4.237 23 H 0.078 0.922 24 H 0.140 0.860 25 H 0.094 0.906 26 H 0.107 0.893 27 H 0.120 0.880 28 H 0.143 0.857 29 H 0.120 0.880 30 H 0.141 0.859 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.559 -14.632 -1.300 16.520 hybrid contribution -0.411 2.377 0.635 2.494 sum 7.148 -12.255 -0.665 14.203 Atomic orbital electron populations 1.70114 1.07442 1.28371 1.49089 1.25778 0.95835 1.02695 0.93741 0.85326 0.78153 0.77205 0.79302 1.18844 1.20481 1.19339 1.21214 0.94004 0.89639 1.53469 0.91394 1.19705 0.85966 0.81328 0.92788 0.97830 1.86469 1.48479 1.22451 1.69617 1.24271 0.86997 0.85199 0.73996 1.90566 1.24250 1.83828 1.44761 1.21145 0.98297 0.90011 1.00531 1.21692 0.99461 1.00238 0.93615 1.23457 0.99547 0.93560 1.04709 1.86967 1.81507 1.17854 1.20835 1.23451 1.01360 1.00846 0.95730 1.21556 0.97959 0.93331 1.01348 1.22695 1.00920 0.93605 0.99075 1.22924 0.98555 1.02376 0.96497 1.23103 0.94929 1.02504 1.03209 0.92206 0.86002 0.90595 0.89323 0.87967 0.85683 0.88030 0.85894 0.90381 0.90906 0.88215 0.87934 0.88765 0.89700 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.20 11.66 21.44 0.25 -51.95 16 2 C 0.02 1.08 5.16 84.65 0.44 1.52 16 3 Si 0.98 42.34 29.54 68.60 2.03 44.37 16 4 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.55 -30.39 8.90 25.60 0.23 -30.17 16 8 H 0.07 3.68 7.81 -2.91 -0.02 3.66 16 9 C 0.26 13.64 2.39 29.85 0.07 13.71 16 10 H 0.00 0.25 7.16 -2.39 -0.02 0.23 16 11 O -0.35 -16.01 8.12 -51.39 -0.42 -16.43 16 12 C 0.45 17.65 6.09 71.23 0.43 18.09 16 13 O -0.54 -24.65 12.70 21.95 0.28 -24.38 16 14 C -0.08 -2.15 2.36 -11.82 -0.03 -2.17 16 15 C -0.11 -2.51 4.75 30.49 0.14 -2.37 16 16 C -0.06 -1.12 6.45 72.01 0.46 -0.65 16 17 S -0.30 -5.84 22.33 -56.49 -1.26 -7.10 16 18 C -0.07 -1.16 6.46 72.02 0.46 -0.69 16 19 C -0.10 -2.43 4.50 30.49 0.14 -2.29 16 20 C -0.14 -7.14 5.23 -10.79 -0.06 -7.19 16 21 C -0.17 -6.62 9.74 30.59 0.30 -6.32 16 22 C -0.20 -8.67 9.87 30.60 0.30 -8.37 16 23 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 24 H 0.12 2.81 8.08 -2.39 -0.02 2.79 16 25 H 0.08 1.82 8.06 -2.39 -0.02 1.80 16 26 H 0.09 2.14 7.40 -2.38 -0.02 2.12 16 27 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.08 2.01 7.69 -2.39 -0.02 1.99 16 32 H 0.07 1.88 8.06 -2.39 -0.02 1.86 16 33 H 0.10 5.47 6.55 -2.39 -0.02 5.46 16 34 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 35 H 0.09 3.52 5.99 -2.39 -0.01 3.50 16 36 H 0.08 3.85 5.56 -2.39 -0.01 3.84 16 37 H 0.09 3.63 8.14 -2.38 -0.02 3.61 16 Total: -1.00 -64.52 307.09 4.83 -59.69 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 1.06 Total: 22.72 kcal Atomic # 6 Polarization: -29.82 SS G_CDS: 2.90 Total: -26.92 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.25 Total: -51.95 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -0.14 Total: -40.80 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: -5.84 SS G_CDS: -1.26 Total: -7.10 kcal Total: -64.52 4.83 -59.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344936363.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.069 kcal (2) G-P(sol) polarization free energy of solvation -64.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds