Wall clock time and date at job start Mon Mar 30 2020 01:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00425 * 2 1 4 4 H 1.48501 * 109.47044 * 269.99902 * 3 2 1 5 5 H 1.48498 * 109.46850 * 29.99826 * 3 2 1 6 6 H 1.48493 * 109.47131 * 149.99459 * 3 2 1 7 7 C 1.37877 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99961 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00275 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47448 * 180.02562 * 9 7 2 11 11 C 1.46905 * 111.00133 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47033 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.47593 * 305.00241 * 12 11 10 14 14 O 1.42905 * 109.47146 * 65.00305 * 12 11 10 15 15 C 1.52999 * 109.47073 * 184.99918 * 12 11 10 16 16 N 1.46504 * 109.47110 * 175.00109 * 15 12 11 17 17 C 1.34951 * 126.03463 * 125.02908 * 16 15 12 18 18 C 1.35320 * 107.74569 * 180.02562 * 17 16 15 19 19 N 1.48019 * 126.03821 * 180.02562 * 18 17 16 20 20 O 1.21802 * 119.99963 * 179.97438 * 19 18 17 21 21 O 1.21802 * 120.00239 * 359.97438 * 19 18 17 22 22 C 1.39866 * 107.91898 * 359.97438 * 18 17 16 23 23 N 1.30844 * 108.20609 * 0.02562 * 22 18 17 24 24 H 0.97006 * 119.99545 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46914 * 59.99610 * 9 7 2 26 26 H 1.09001 * 109.47138 * 300.00233 * 9 7 2 27 27 H 1.00900 * 110.99852 * 303.95566 * 10 9 7 28 28 H 1.09005 * 109.46517 * 60.00279 * 11 10 9 29 29 H 1.08997 * 109.46868 * 300.00464 * 11 10 9 30 30 H 0.96708 * 113.99911 * 59.99617 * 14 12 11 31 31 H 1.09001 * 109.46735 * 55.00582 * 15 12 11 32 32 H 1.08995 * 109.47484 * 295.00227 * 15 12 11 33 33 H 1.07995 * 126.12661 * 359.96151 * 17 16 15 34 34 H 1.08004 * 125.89937 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2054 -3.6158 0.0018 11 6 1.5050 -4.9071 0.0012 12 6 2.5298 -6.0431 0.0019 13 1 3.2115 -5.9181 -0.8394 14 8 3.2708 -6.0155 1.2235 15 6 1.8046 -7.3843 -0.1244 16 7 2.7892 -8.4626 -0.2438 17 6 2.8691 -9.5555 0.5438 18 6 3.9095 -10.3029 0.1078 19 7 4.3586 -11.5904 0.6837 20 8 5.3131 -12.1733 0.2014 21 8 3.7736 -12.0669 1.6399 22 6 4.4846 -9.6445 -0.9840 23 7 3.8141 -8.5411 -1.1956 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8409 -3.5491 -0.7791 28 1 0.8812 -4.9816 -0.8896 29 1 0.8791 -4.9813 0.8904 30 1 2.7267 -6.1215 2.0160 31 1 1.1699 -7.3721 -1.0106 32 1 1.1900 -7.5499 0.7604 33 1 2.2197 -9.7909 1.3740 34 1 5.3354 -9.9876 -1.5540 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345632170.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:57 Heat of formation + Delta-G solvation = 24.995841 kcal Electronic energy + Delta-G solvation = -19666.711569 eV Core-core repulsion = 16218.980962 eV Total energy + Delta-G solvation = -3447.730606 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.64109 -41.56378 -38.20279 -36.62449 -34.95205 -33.93714 -32.52273 -31.60343 -30.12320 -27.54246 -26.03277 -24.72123 -22.39187 -21.96211 -21.53080 -21.35141 -19.34153 -18.61670 -17.70306 -17.23206 -16.81751 -16.42275 -16.14737 -15.39534 -14.96353 -14.73405 -14.20295 -14.11419 -13.83936 -13.27035 -12.70983 -12.48115 -12.03004 -11.74754 -11.67746 -11.49467 -11.29611 -11.26848 -11.12664 -10.88184 -10.82009 -10.54450 -10.26879 -10.03670 -9.66337 -9.28150 -8.59378 -7.50256 -6.14495 -4.16788 0.05550 0.98113 1.12813 1.88143 2.00076 3.25429 3.31823 3.36743 3.57583 3.89292 4.07595 4.12431 4.34497 4.38524 4.53723 4.65665 4.84051 4.96844 5.20812 5.22130 5.36241 5.48469 5.77645 5.89414 5.97104 6.23513 6.66935 7.01721 7.21941 7.52144 7.54886 7.64905 7.97394 8.17439 8.42329 8.92107 9.48921 10.96635 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.055124 B = 0.002728 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.825613 B =10261.457505 C =10388.020929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.195 3.805 10 N -0.679 5.679 11 C 0.031 3.969 12 C 0.100 3.900 13 H 0.112 0.888 14 O -0.540 6.540 15 C 0.090 3.910 16 N -0.331 5.331 17 C 0.156 3.844 18 C -0.198 4.198 19 N 0.072 4.928 20 O -0.168 6.168 21 O -0.179 6.179 22 C 0.111 3.889 23 N -0.259 5.259 24 H 0.262 0.738 25 H -0.013 1.013 26 H 0.028 0.972 27 H 0.332 0.668 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.372 0.628 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.204 0.796 34 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 -19.576 -0.403 19.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.310 5.310 11 C -0.100 4.100 12 C 0.039 3.961 13 H 0.130 0.870 14 O -0.344 6.344 15 C -0.031 4.031 16 N -0.108 5.108 17 C 0.000 4.000 18 C -0.296 4.296 19 N 0.588 4.412 20 O -0.381 6.381 21 O -0.390 6.390 22 C -0.078 4.078 23 N -0.079 5.079 24 H 0.072 0.928 25 H 0.004 0.996 26 H 0.046 0.954 27 H 0.149 0.851 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.218 0.782 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.220 0.780 34 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 2.284 -17.546 -1.105 17.728 hybrid contribution -0.404 -0.210 0.081 0.463 sum 1.880 -17.756 -1.025 17.885 Atomic orbital electron populations 1.69954 1.06126 1.26972 1.50747 1.24992 0.94908 0.99497 0.95149 0.86450 0.79830 0.82765 0.78120 1.20645 1.21161 1.19677 1.21160 0.93611 0.90097 1.50631 0.91849 1.19584 0.90484 0.87341 0.95760 1.60598 1.20756 1.00302 1.49336 1.22492 0.94978 0.91575 1.00952 1.22316 0.94603 0.89600 0.89555 0.86987 1.86707 1.37137 1.95725 1.14812 1.23080 0.88538 0.85689 1.05761 1.48828 1.23858 1.16286 1.21835 1.22354 0.96025 0.86265 0.95346 1.21024 1.07496 0.93478 1.07579 1.42460 0.99163 1.00508 0.99118 1.94548 1.18521 1.61138 1.63917 1.94543 1.57158 1.69139 1.18153 1.23976 0.99336 0.90323 0.94188 1.77786 1.00100 1.18620 1.11348 0.92809 0.99558 0.95402 0.85149 0.95072 0.90959 0.78162 0.87163 0.86884 0.77968 0.77447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.24 9.32 -34.44 -0.32 -14.56 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.19 4.81 5.44 -4.98 -0.03 4.79 16 10 N -0.68 -13.32 6.44 -115.06 -0.74 -14.06 16 11 C 0.03 0.43 5.32 -3.82 -0.02 0.41 16 12 C 0.10 1.10 3.26 -26.74 -0.09 1.02 16 13 H 0.11 1.44 8.05 -51.93 -0.42 1.02 16 14 O -0.54 -6.81 13.23 -35.23 -0.47 -7.27 16 15 C 0.09 0.64 6.15 -4.04 -0.02 0.61 16 16 N -0.33 -2.92 3.63 -61.36 -0.22 -3.14 16 17 C 0.16 1.24 11.13 -17.22 -0.19 1.04 16 18 C -0.20 -2.00 7.11 -80.38 -0.57 -2.57 16 19 N 0.07 0.87 4.45 33.75 0.15 1.02 16 20 O -0.17 -2.15 19.05 -29.46 -0.56 -2.71 16 21 O -0.18 -2.25 19.02 -29.46 -0.56 -2.81 16 22 C 0.11 1.07 11.75 -17.36 -0.20 0.87 16 23 N -0.26 -2.80 12.34 30.63 0.38 -2.42 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H -0.01 -0.35 8.14 -51.93 -0.42 -0.77 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.33 6.39 8.72 -39.29 -0.34 6.05 16 28 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.37 3.33 9.05 45.56 0.41 3.74 16 31 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.11 0.44 8.07 -51.93 -0.42 0.02 16 33 H 0.20 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.21 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 314.08 15.07 4.73 4.73 Total: -1.00 -33.85 314.08 -6.39 -40.24 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -3.27 Total: 2.46 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -1.54 Total: -6.92 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.30 Total: -43.97 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -1.59 Total: -12.79 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.85 -6.39 -40.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345632170.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.236 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds