Wall clock time and date at job start Mon Mar 30 2020 01:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00425 * 2 1 4 4 H 1.48501 * 109.47044 * 269.99902 * 3 2 1 5 5 H 1.48498 * 109.46850 * 29.99826 * 3 2 1 6 6 H 1.48493 * 109.47131 * 149.99459 * 3 2 1 7 7 C 1.37877 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99961 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00275 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47448 * 180.02562 * 9 7 2 11 11 C 1.46905 * 111.00133 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47033 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.47593 * 305.00241 * 12 11 10 14 14 O 1.42905 * 109.47146 * 65.00305 * 12 11 10 15 15 C 1.52999 * 109.47073 * 184.99918 * 12 11 10 16 16 N 1.46504 * 109.47110 * 175.00109 * 15 12 11 17 17 C 1.34951 * 126.03463 * 125.02908 * 16 15 12 18 18 C 1.35320 * 107.74569 * 180.02562 * 17 16 15 19 19 N 1.48019 * 126.03821 * 180.02562 * 18 17 16 20 20 O 1.21802 * 119.99963 * 179.97438 * 19 18 17 21 21 O 1.21802 * 120.00239 * 359.97438 * 19 18 17 22 22 C 1.39866 * 107.91898 * 359.97438 * 18 17 16 23 23 N 1.30844 * 108.20609 * 0.02562 * 22 18 17 24 24 H 0.97006 * 119.99545 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46914 * 59.99610 * 9 7 2 26 26 H 1.09001 * 109.47138 * 300.00233 * 9 7 2 27 27 H 1.00900 * 110.99852 * 303.95566 * 10 9 7 28 28 H 1.09005 * 109.46517 * 60.00279 * 11 10 9 29 29 H 1.08997 * 109.46868 * 300.00464 * 11 10 9 30 30 H 0.96708 * 113.99911 * 59.99617 * 14 12 11 31 31 H 1.09001 * 109.46735 * 55.00582 * 15 12 11 32 32 H 1.08995 * 109.47484 * 295.00227 * 15 12 11 33 33 H 1.07995 * 126.12661 * 359.96151 * 17 16 15 34 34 H 1.08004 * 125.89937 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2054 -3.6158 0.0018 11 6 1.5050 -4.9071 0.0012 12 6 2.5298 -6.0431 0.0019 13 1 3.2115 -5.9181 -0.8394 14 8 3.2708 -6.0155 1.2235 15 6 1.8046 -7.3843 -0.1244 16 7 2.7892 -8.4626 -0.2438 17 6 2.8691 -9.5555 0.5438 18 6 3.9095 -10.3029 0.1078 19 7 4.3586 -11.5904 0.6837 20 8 5.3131 -12.1733 0.2014 21 8 3.7736 -12.0669 1.6399 22 6 4.4846 -9.6445 -0.9840 23 7 3.8141 -8.5411 -1.1956 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8409 -3.5491 -0.7791 28 1 0.8812 -4.9816 -0.8896 29 1 0.8791 -4.9813 0.8904 30 1 2.7267 -6.1215 2.0160 31 1 1.1699 -7.3721 -1.0106 32 1 1.1900 -7.5499 0.7604 33 1 2.2197 -9.7909 1.3740 34 1 5.3354 -9.9876 -1.5540 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345632170.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:57 Heat of formation + Delta-G solvation = -2.036309 kcal Electronic energy + Delta-G solvation = -19667.883771 eV Core-core repulsion = 16218.980962 eV Total energy + Delta-G solvation = -3448.902808 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.41319 -42.36333 -39.18659 -37.52752 -36.53268 -34.68575 -34.43856 -32.34086 -31.22934 -28.97795 -27.14986 -25.89506 -23.71028 -23.09735 -22.59283 -22.19924 -20.11605 -19.49126 -18.74177 -18.55850 -17.81543 -17.50291 -17.13726 -16.64862 -16.28632 -15.68514 -15.58952 -15.20777 -14.72631 -14.46370 -14.20838 -13.54196 -13.40610 -13.03406 -12.82354 -12.67722 -12.63398 -12.57938 -12.23466 -12.21617 -12.10467 -11.95812 -11.54975 -11.27570 -10.94728 -10.69026 -10.42075 -9.12481 -8.26377 -6.36622 -0.79095 0.23432 0.41897 1.19716 1.24500 1.39700 1.40632 1.52484 2.37463 2.87082 3.07649 3.26337 3.32206 3.43489 3.68233 3.82629 3.95887 3.99137 4.08375 4.32371 4.34486 4.66856 4.73001 4.95109 5.04556 5.24043 5.25334 5.41329 5.58137 5.96901 5.99133 6.38282 6.61370 6.64743 6.80067 6.86430 7.34533 8.84801 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.055124 B = 0.002728 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.825613 B =10261.457505 C =10388.020929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.538 4.538 8 H 0.059 0.941 9 C 0.210 3.790 10 N -0.686 5.686 11 C 0.031 3.969 12 C 0.113 3.887 13 H 0.090 0.910 14 O -0.563 6.563 15 C 0.095 3.905 16 N -0.331 5.331 17 C 0.177 3.823 18 C -0.218 4.218 19 N 0.076 4.924 20 O -0.199 6.199 21 O -0.186 6.186 22 C 0.112 3.888 23 N -0.291 5.291 24 H 0.266 0.734 25 H -0.036 1.036 26 H 0.006 0.994 27 H 0.332 0.668 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.387 0.613 31 H 0.126 0.874 32 H 0.156 0.844 33 H 0.242 0.758 34 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.970 -19.793 0.069 19.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.577 4.577 8 H 0.078 0.922 9 C 0.082 3.918 10 N -0.317 5.317 11 C -0.100 4.100 12 C 0.053 3.947 13 H 0.108 0.892 14 O -0.370 6.370 15 C -0.025 4.025 16 N -0.108 5.108 17 C 0.021 3.979 18 C -0.317 4.317 19 N 0.586 4.414 20 O -0.406 6.406 21 O -0.397 6.397 22 C -0.077 4.077 23 N -0.110 5.110 24 H 0.075 0.925 25 H -0.018 1.018 26 H 0.024 0.976 27 H 0.149 0.851 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.237 0.763 31 H 0.144 0.856 32 H 0.174 0.826 33 H 0.259 0.741 34 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 1.975 -17.808 -0.649 17.929 hybrid contribution -0.346 -0.149 -0.048 0.380 sum 1.629 -17.957 -0.696 18.044 Atomic orbital electron populations 1.70060 1.07598 1.28040 1.51479 1.25880 0.95786 1.03179 0.94597 0.85391 0.78518 0.78295 0.78475 1.19734 1.20574 1.19199 1.21552 0.93703 0.91755 1.50657 0.92239 1.19203 0.90476 0.88589 0.93521 1.60445 1.20229 1.01480 1.49504 1.22607 0.95745 0.89733 1.01892 1.22012 0.93350 0.90798 0.88556 0.89174 1.86670 1.38476 1.95916 1.15925 1.23143 0.87755 0.82917 1.08658 1.48917 1.23636 1.16762 1.21464 1.22948 0.95061 0.84896 0.94976 1.21181 1.08906 0.93048 1.08518 1.42665 0.98855 1.00995 0.98888 1.94544 1.19449 1.62131 1.64499 1.94518 1.57049 1.69654 1.18457 1.24317 0.99486 0.89855 0.94066 1.77771 1.01288 1.19261 1.12730 0.92543 1.01794 0.97624 0.85144 0.94126 0.89822 0.76321 0.85623 0.82603 0.74147 0.75978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.48 13.29 21.45 0.28 -54.19 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.97 43.44 29.54 68.60 2.03 45.47 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.54 -29.93 9.32 25.60 0.24 -29.69 16 8 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 9 C 0.21 10.53 5.44 85.56 0.47 10.99 16 10 N -0.69 -26.78 6.44 -517.93 -3.34 -30.11 16 11 C 0.03 0.80 5.32 86.30 0.46 1.26 16 12 C 0.11 2.27 3.26 30.59 0.10 2.37 16 13 H 0.09 2.24 8.05 -2.39 -0.02 2.22 16 14 O -0.56 -13.03 13.23 -148.98 -1.97 -15.00 16 15 C 0.09 1.01 6.15 86.38 0.53 1.54 16 16 N -0.33 -4.87 3.63 -348.06 -1.26 -6.13 16 17 C 0.18 2.23 11.13 83.54 0.93 3.16 16 18 C -0.22 -4.02 7.11 36.10 0.26 -3.76 16 19 N 0.08 1.75 4.45 -47.13 -0.21 1.54 16 20 O -0.20 -5.12 19.05 18.88 0.36 -4.76 16 21 O -0.19 -4.42 19.02 18.88 0.36 -4.06 16 22 C 0.11 2.03 11.75 85.23 1.00 3.03 16 23 N -0.29 -5.85 12.34 -57.02 -0.70 -6.55 16 24 H 0.27 14.58 8.31 -92.70 -0.77 13.81 16 25 H -0.04 -1.90 8.14 -2.39 -0.02 -1.92 16 26 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.33 12.84 8.72 -89.69 -0.78 12.05 16 28 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.39 5.87 9.05 -74.05 -0.67 5.20 16 31 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.16 0.37 8.07 -2.39 -0.02 0.35 16 33 H 0.24 0.95 8.06 -2.91 -0.02 0.93 16 34 H 0.22 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -74.33 314.08 -0.32 -74.64 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -0.31 Total: 9.56 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 4.44 Total: -10.40 kcal Atomic # 7 Polarization: -90.22 SS G_CDS: -5.23 Total: -95.45 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -1.25 Total: -23.82 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -74.33 -0.32 -74.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345632170.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.605 kcal (2) G-P(sol) polarization free energy of solvation -74.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds