Wall clock time and date at job start Mon Mar 30 2020 01:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00020 * 2 1 4 4 H 1.48498 * 109.47325 * 270.00047 * 3 2 1 5 5 H 1.48504 * 109.46912 * 30.00324 * 3 2 1 6 6 H 1.48506 * 109.46856 * 150.00102 * 3 2 1 7 7 C 1.37881 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00318 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99719 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47392 * 60.00161 * 9 7 2 11 11 O 1.45200 * 109.47056 * 180.02562 * 9 7 2 12 12 C 1.34225 * 117.00216 * 209.99852 * 11 9 7 13 13 O 1.20825 * 119.99708 * 0.02562 * 12 11 9 14 14 C 1.50698 * 120.00293 * 179.97438 * 12 11 9 15 15 H 1.09003 * 109.39145 * 299.80690 * 14 12 11 16 16 C 1.52587 * 109.39371 * 179.97438 * 14 12 11 17 17 C 1.52582 * 110.72767 * 169.17788 * 16 14 12 18 18 C 1.53095 * 109.95663 * 70.67626 * 17 16 14 19 19 S 1.81746 * 108.84073 * 296.97689 * 18 17 16 20 20 C 1.53099 * 109.38990 * 59.50651 * 14 12 11 21 21 C 1.52999 * 109.47139 * 299.99477 * 9 7 2 22 22 C 1.53002 * 117.49968 * 179.97438 * 21 9 7 23 23 C 1.53000 * 60.02940 * 107.50530 * 22 21 9 24 24 H 0.96998 * 119.99876 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.22253 * 289.50491 * 16 14 12 26 26 H 1.09003 * 109.21983 * 48.85611 * 16 14 12 27 27 H 1.08997 * 109.38707 * 190.82948 * 17 16 14 28 28 H 1.09001 * 109.38846 * 310.62632 * 17 16 14 29 29 H 1.09008 * 109.57240 * 56.78257 * 18 17 16 30 30 H 1.08993 * 109.57822 * 177.16407 * 18 17 16 31 31 H 1.08999 * 109.57338 * 302.98217 * 20 14 12 32 32 H 1.09007 * 109.57273 * 63.36281 * 20 14 12 33 33 H 1.08999 * 115.55899 * 34.31791 * 21 9 7 34 34 H 1.09002 * 117.49918 * 0.02562 * 22 21 9 35 35 H 1.09002 * 117.49754 * 215.00713 * 22 21 9 36 36 H 1.09008 * 117.49673 * 107.47884 * 23 22 21 37 37 H 1.08999 * 117.49942 * 252.47315 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 1 0.6247 -2.5563 -0.8919 11 8 2.1945 -3.6028 -0.0015 12 6 1.8037 -4.7388 -0.6002 13 8 0.7097 -4.8085 -1.1081 14 6 2.7300 -5.9269 -0.6400 15 1 3.6449 -5.6550 -1.1664 16 6 2.0465 -7.0779 -1.3722 17 6 3.0408 -8.1974 -1.6658 18 6 3.4262 -8.9081 -0.3658 19 16 4.2662 -7.7216 0.7250 20 6 3.0756 -6.3500 0.7902 21 6 0.3710 -2.5811 1.2472 22 6 -0.4796 -3.8395 1.4308 23 6 0.7498 -3.6126 2.3128 24 1 -0.4850 0.8400 0.0004 25 1 1.2390 -7.4682 -0.7528 26 1 1.6322 -6.7103 -2.3111 27 1 2.5866 -8.9146 -2.3495 28 1 3.9350 -7.7760 -2.1251 29 1 2.5283 -9.2835 0.1253 30 1 4.0970 -9.7380 -0.5882 31 1 3.5174 -5.5083 1.3234 32 1 2.1707 -6.6755 1.3035 33 1 -0.0496 -1.6354 1.5890 34 1 -0.4119 -4.6093 0.6620 35 1 -1.4596 -3.7216 1.8933 36 1 0.5786 -3.3450 3.3556 37 1 1.6259 -4.2332 2.1245 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346708204.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:37 Heat of formation + Delta-G solvation = -78.161084 kcal Electronic energy + Delta-G solvation = -19374.812631 eV Core-core repulsion = 16436.609269 eV Total energy + Delta-G solvation = -2938.203363 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.09553 -37.26763 -35.95056 -34.76910 -32.85979 -31.93352 -27.95518 -27.32309 -24.48952 -23.23920 -21.72581 -21.45612 -19.96476 -19.00720 -17.38361 -16.80953 -16.48567 -15.78489 -15.46382 -15.01383 -14.63751 -14.35811 -13.88553 -13.60309 -13.42645 -13.01784 -12.64370 -12.45320 -11.82543 -11.56214 -11.44230 -11.41182 -11.23259 -11.05102 -10.96947 -10.92785 -10.58794 -10.33329 -10.11837 -9.96304 -9.56313 -9.51552 -9.15452 -8.57397 -8.47743 -7.79487 -6.22136 -4.29444 1.63487 2.32798 2.89591 3.22846 3.28728 3.32064 3.55264 4.30026 4.53667 4.60195 4.69863 4.77648 4.88450 5.05878 5.10613 5.25760 5.34714 5.49231 5.56591 5.62608 5.75321 5.81010 5.86242 6.01559 6.04702 6.09352 6.15948 6.41051 6.63167 6.83939 6.95707 7.14588 7.52544 7.55035 7.79773 8.07286 8.54617 8.82813 9.35354 10.85042 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.028244 B = 0.005071 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.130622 B = 5520.381046 C = 5699.108933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.519 4.519 8 H 0.070 0.930 9 C 0.248 3.752 10 H 0.052 0.948 11 O -0.349 6.349 12 C 0.458 3.542 13 O -0.512 6.512 14 C -0.083 4.083 15 H 0.115 0.885 16 C -0.116 4.116 17 C -0.120 4.120 18 C -0.086 4.086 19 S -0.259 6.259 20 C -0.071 4.071 21 C -0.115 4.115 22 C -0.210 4.210 23 C -0.195 4.195 24 H 0.266 0.734 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.130 0.870 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.030 -14.361 -0.141 15.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.138 4.138 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.557 4.557 8 H 0.089 0.911 9 C 0.195 3.805 10 H 0.070 0.930 11 O -0.265 6.265 12 C 0.299 3.701 13 O -0.402 6.402 14 C -0.104 4.104 15 H 0.133 0.867 16 C -0.153 4.153 17 C -0.158 4.158 18 C -0.234 4.234 19 S -0.032 6.032 20 C -0.219 4.219 21 C -0.134 4.134 22 C -0.247 4.247 23 C -0.232 4.232 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.122 0.878 31 H 0.139 0.861 32 H 0.107 0.893 33 H 0.147 0.853 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.547 -14.314 0.262 15.354 hybrid contribution -1.033 1.041 -0.464 1.538 sum 4.514 -13.273 -0.202 14.021 Atomic orbital electron populations 1.69978 1.05922 1.27362 1.49001 1.24900 0.95041 0.99300 0.94566 0.86308 0.79702 0.82024 0.78348 1.20375 1.20948 1.19518 1.20949 0.93976 0.88322 1.52432 0.91139 1.20161 0.85964 0.80352 0.93986 0.93028 1.86492 1.49259 1.22057 1.68658 1.23162 0.86385 0.85039 0.75525 1.90587 1.22461 1.83503 1.43628 1.21241 0.99629 0.92371 0.97163 0.86748 1.21425 0.97930 0.93818 1.02148 1.21740 1.00241 0.97599 0.96261 1.23509 1.03286 0.99094 0.97539 1.86903 1.32375 1.18695 1.65192 1.23441 1.01137 0.99244 0.98052 1.23033 0.99184 0.93715 0.97445 1.23137 0.94521 1.03641 1.03436 1.22818 0.98521 1.05951 0.95912 0.92376 0.91037 0.89607 0.90356 0.90333 0.89777 0.87786 0.86085 0.89262 0.85259 0.88930 0.90520 0.90382 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.66 11.59 55.43 0.64 -24.02 16 2 C 0.06 1.74 5.20 -17.82 -0.09 1.65 16 3 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.52 -14.18 8.90 -34.44 -0.31 -14.49 16 8 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 9 C 0.25 6.40 2.41 -27.88 -0.07 6.33 16 10 H 0.05 1.50 7.16 -51.93 -0.37 1.12 16 11 O -0.35 -7.83 8.22 -39.24 -0.32 -8.16 16 12 C 0.46 8.94 6.19 36.00 0.22 9.16 16 13 O -0.51 -11.24 12.82 -18.75 -0.24 -11.48 16 14 C -0.08 -1.19 2.47 -91.93 -0.23 -1.42 16 15 H 0.11 1.55 8.06 -51.93 -0.42 1.13 16 16 C -0.12 -1.41 4.38 -27.16 -0.12 -1.53 16 17 C -0.12 -1.10 5.75 -26.90 -0.15 -1.26 16 18 C -0.09 -0.78 6.45 37.21 0.24 -0.54 16 19 S -0.26 -3.08 22.33 -107.50 -2.40 -5.48 16 20 C -0.07 -0.94 5.64 37.21 0.21 -0.73 16 21 C -0.12 -2.79 5.28 -90.58 -0.48 -3.27 16 22 C -0.21 -4.49 9.85 -26.73 -0.26 -4.76 16 23 C -0.19 -3.99 9.79 -26.70 -0.26 -4.25 16 24 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 25 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 26 H 0.09 1.13 7.69 -51.93 -0.40 0.73 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.72 8.05 -51.93 -0.42 0.30 16 29 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.12 1.71 8.04 -51.93 -0.42 1.29 16 32 H 0.09 1.17 8.14 -51.92 -0.42 0.75 16 33 H 0.13 3.44 6.46 -51.93 -0.34 3.10 16 34 H 0.09 2.03 5.37 -51.93 -0.28 1.75 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.08 1.46 8.14 -51.92 -0.42 1.04 16 37 H 0.08 1.63 6.87 -51.93 -0.36 1.28 16 LS Contribution 308.88 15.07 4.65 4.65 Total: -1.00 -28.84 308.88 -9.48 -38.33 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.50 Total: 5.54 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -1.30 Total: -15.10 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.64 Total: -24.02 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.56 Total: -19.63 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -3.08 SS G_CDS: -2.40 Total: -5.48 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.84 -9.48 -38.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346708204.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.835 kcal (2) G-P(sol) polarization free energy of solvation -28.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds