Wall clock time and date at job start Mon Mar 30 2020 01:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00097 * 2 1 4 4 H 1.48502 * 109.47336 * 264.66724 * 3 2 1 5 5 H 1.48500 * 109.47054 * 24.66792 * 3 2 1 6 6 H 1.48505 * 109.47131 * 144.66508 * 3 2 1 7 7 C 1.37876 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99923 * 5.05002 * 7 2 1 9 9 C 1.50706 * 120.00423 * 185.04549 * 7 2 1 10 10 H 1.08997 * 109.46373 * 35.13630 * 9 7 2 11 11 O 1.45204 * 109.47087 * 275.14004 * 9 7 2 12 12 C 1.34226 * 117.00079 * 149.99623 * 11 9 7 13 13 O 1.20828 * 119.99567 * 359.97438 * 12 11 9 14 14 C 1.50695 * 120.00197 * 179.97438 * 12 11 9 15 15 H 1.08995 * 109.39292 * 299.80561 * 14 12 11 16 16 C 1.52578 * 109.39159 * 180.02562 * 14 12 11 17 17 C 1.52582 * 110.72778 * 169.17628 * 16 14 12 18 18 C 1.53107 * 109.95499 * 70.67534 * 17 16 14 19 19 S 1.81747 * 108.84128 * 296.97741 * 18 17 16 20 20 C 1.53098 * 109.38715 * 59.50564 * 14 12 11 21 21 C 1.53001 * 109.47214 * 155.13638 * 9 7 2 22 22 C 1.52990 * 117.49635 * 244.14207 * 21 9 7 23 23 C 1.52993 * 60.00231 * 252.51265 * 22 21 9 24 24 H 0.97000 * 120.00054 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.23004 * 289.49887 * 16 14 12 26 26 H 1.09000 * 109.22390 * 48.85850 * 16 14 12 27 27 H 1.08998 * 109.39024 * 190.82203 * 17 16 14 28 28 H 1.08995 * 109.39184 * 310.62927 * 17 16 14 29 29 H 1.09001 * 109.56898 * 56.78561 * 18 17 16 30 30 H 1.08999 * 109.57463 * 177.16890 * 18 17 16 31 31 H 1.08995 * 109.58024 * 302.98064 * 20 14 12 32 32 H 1.09006 * 109.57436 * 63.36821 * 20 14 12 33 33 H 1.08997 * 115.54678 * 29.85063 * 21 9 7 34 34 H 1.08999 * 117.50406 * 0.02562 * 22 21 9 35 35 H 1.09008 * 117.50058 * 145.02498 * 22 21 9 36 36 H 1.09002 * 117.50166 * 252.51795 * 23 22 21 37 37 H 1.09002 * 117.50298 * 107.49144 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6094 1.9814 -1.3940 5 1 1.3948 2.6825 0.5843 6 1 3.4858 1.4753 0.8098 7 6 2.0046 -1.1940 -0.0005 8 1 1.4677 -2.1276 -0.0833 9 6 3.5072 -1.1967 0.1142 10 1 3.8230 -0.3840 0.7684 11 8 4.0935 -1.0144 -1.2016 12 6 5.2819 -0.3932 -1.2585 13 8 5.8145 -0.0138 -0.2425 14 6 5.9520 -0.1689 -2.5896 15 1 6.1362 -1.1304 -3.0686 16 6 7.2795 0.5515 -2.3735 17 6 8.1053 0.5585 -3.6565 18 6 7.4651 1.4950 -4.6848 19 16 5.8182 0.8574 -5.1142 20 6 5.0384 0.6748 -3.4827 21 6 3.9717 -2.5320 0.6991 22 6 4.6634 -2.5032 2.0634 23 6 5.4792 -2.7737 0.7978 24 1 -0.4850 0.8400 0.0004 25 1 7.0846 1.5790 -2.0665 26 1 7.8400 0.0434 -1.5887 27 1 9.1158 0.9013 -3.4346 28 1 8.1472 -0.4510 -4.0654 29 1 7.3705 2.4941 -4.2595 30 1 8.0863 1.5341 -5.5796 31 1 4.0744 0.1781 -3.5919 32 1 4.8960 1.6581 -3.0342 33 1 3.3381 -3.3897 0.4736 34 1 4.7871 -1.5331 2.5446 35 1 4.4848 -3.3422 2.7361 36 1 5.8374 -3.7907 0.6376 37 1 6.1402 -1.9815 0.4460 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346708206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:39 Heat of formation + Delta-G solvation = -78.342098 kcal Electronic energy + Delta-G solvation = -19503.396937 eV Core-core repulsion = 16565.185725 eV Total energy + Delta-G solvation = -2938.211212 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.01361 -37.32014 -36.02401 -35.02672 -32.85189 -31.87612 -28.65384 -27.29000 -24.39017 -23.11055 -21.81528 -21.65992 -19.89207 -19.33665 -17.54541 -16.97609 -16.58359 -15.95881 -15.42103 -14.96387 -14.72554 -14.31607 -13.96626 -13.56077 -13.26092 -13.19379 -12.88920 -12.66513 -12.06058 -11.71317 -11.56640 -11.45959 -11.32489 -11.07814 -11.01099 -10.90357 -10.81547 -10.29606 -9.94735 -9.79250 -9.66493 -9.44229 -9.24644 -9.04767 -8.89438 -7.74223 -6.41293 -4.48393 1.69045 2.38202 2.92617 3.12640 3.20932 3.28380 3.52088 4.17746 4.48491 4.56410 4.65379 4.73843 4.82230 4.99597 5.12399 5.30271 5.37294 5.43071 5.54352 5.58653 5.63681 5.66570 5.74360 5.83759 5.94215 6.05648 6.14015 6.17588 6.26699 6.46205 6.59160 6.70066 6.95679 7.33992 7.58707 8.18955 8.65665 8.68609 9.18895 10.68077 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.018268 B = 0.007401 C = 0.005940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.352908 B = 3782.436424 C = 4713.055613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.089 3.911 3 Si 0.864 3.136 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.254 1.254 7 C -0.501 4.501 8 H 0.087 0.913 9 C 0.196 3.804 10 H 0.059 0.941 11 O -0.351 6.351 12 C 0.452 3.548 13 O -0.525 6.525 14 C -0.088 4.088 15 H 0.114 0.886 16 C -0.116 4.116 17 C -0.119 4.119 18 C -0.087 4.087 19 S -0.259 6.259 20 C -0.072 4.072 21 C -0.135 4.135 22 C -0.172 4.172 23 C -0.201 4.201 24 H 0.272 0.728 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.124 0.876 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.203 1.198 -6.223 15.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.119 4.119 3 Si 0.690 3.310 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.179 1.179 7 C -0.537 4.537 8 H 0.105 0.895 9 C 0.145 3.855 10 H 0.076 0.924 11 O -0.268 6.268 12 C 0.294 3.706 13 O -0.416 6.416 14 C -0.109 4.109 15 H 0.132 0.868 16 C -0.153 4.153 17 C -0.158 4.158 18 C -0.235 4.235 19 S -0.031 6.031 20 C -0.220 4.220 21 C -0.154 4.154 22 C -0.209 4.209 23 C -0.238 4.238 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.122 0.878 31 H 0.142 0.858 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.691 1.191 -6.934 15.393 hybrid contribution 0.753 1.163 1.243 1.861 sum 14.444 2.354 -5.691 15.702 Atomic orbital electron populations 1.69875 1.06337 1.27994 1.46220 1.25124 0.94810 0.99414 0.92538 0.87029 0.80988 0.83244 0.79757 1.19370 1.20690 1.17855 1.20967 0.86793 0.95303 1.50648 0.89539 1.20886 0.92925 0.92424 0.79223 0.92357 1.87062 1.30655 1.67830 1.41205 1.23375 0.81589 0.75130 0.90485 1.90546 1.64921 1.49198 1.36981 1.21320 0.94990 1.01761 0.92822 0.86766 1.21424 0.94226 1.01668 0.98015 1.21737 0.99167 1.00322 0.94546 1.23508 0.95501 1.01608 1.02906 1.86880 1.15540 1.86552 1.14152 1.23451 1.01764 1.03385 0.93438 1.22647 0.93033 1.00504 0.99187 1.22820 1.04835 1.02392 0.90865 1.23118 0.95535 1.01838 1.03281 0.91777 0.91196 0.89719 0.90452 0.90351 0.89860 0.87778 0.85763 0.89573 0.87865 0.89178 0.89425 0.89964 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.24 13.96 55.43 0.77 -24.46 16 2 C 0.09 2.48 5.47 -17.82 -0.10 2.38 16 3 Si 0.86 21.29 27.34 -169.99 -4.65 16.65 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.25 -6.34 6.15 56.52 0.35 -5.99 16 7 C -0.50 -13.79 9.24 -34.44 -0.32 -14.11 16 8 H 0.09 2.52 7.96 -52.48 -0.42 2.11 16 9 C 0.20 4.76 1.62 -27.88 -0.05 4.71 16 10 H 0.06 1.51 4.49 -51.93 -0.23 1.27 16 11 O -0.35 -8.00 9.27 -39.25 -0.36 -8.36 16 12 C 0.45 9.03 6.25 36.00 0.23 9.25 16 13 O -0.52 -11.37 12.98 -18.75 -0.24 -11.61 16 14 C -0.09 -1.35 2.47 -91.94 -0.23 -1.57 16 15 H 0.11 1.60 8.05 -51.93 -0.42 1.18 16 16 C -0.12 -1.49 4.38 -27.16 -0.12 -1.61 16 17 C -0.12 -1.16 5.75 -26.89 -0.15 -1.32 16 18 C -0.09 -0.87 6.46 37.21 0.24 -0.63 16 19 S -0.26 -3.43 22.33 -107.50 -2.40 -5.83 16 20 C -0.07 -1.11 5.68 37.21 0.21 -0.90 16 21 C -0.14 -2.86 5.44 -90.63 -0.49 -3.35 16 22 C -0.17 -3.19 10.18 -26.74 -0.27 -3.46 16 23 C -0.20 -3.68 9.78 -26.74 -0.26 -3.94 16 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 26 H 0.08 1.12 7.70 -51.93 -0.40 0.72 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.75 8.05 -51.93 -0.42 0.33 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.12 2.08 8.03 -51.93 -0.42 1.67 16 32 H 0.09 1.37 8.14 -51.92 -0.42 0.95 16 33 H 0.10 2.15 8.00 -51.93 -0.42 1.74 16 34 H 0.09 1.72 8.03 -51.93 -0.42 1.31 16 35 H 0.09 1.40 8.14 -51.92 -0.42 0.98 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.10 1.92 5.25 -51.93 -0.27 1.65 16 LS Contribution 309.75 15.07 4.67 4.67 Total: -1.00 -29.44 309.75 -9.08 -38.51 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.55 Total: 4.98 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -1.31 Total: -14.55 kcal Atomic # 7 Polarization: -25.24 SS G_CDS: 0.77 Total: -24.46 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.61 Total: -19.97 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.65 Total: 16.65 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -2.40 Total: -5.83 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.44 -9.08 -38.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346708206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.828 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds