Wall clock time and date at job start Mon Mar 30 2020 01:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00097 * 2 1 4 4 H 1.48502 * 109.47336 * 264.66724 * 3 2 1 5 5 H 1.48500 * 109.47054 * 24.66792 * 3 2 1 6 6 H 1.48505 * 109.47131 * 144.66508 * 3 2 1 7 7 C 1.37876 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99923 * 5.05002 * 7 2 1 9 9 C 1.50706 * 120.00423 * 185.04549 * 7 2 1 10 10 H 1.08997 * 109.46373 * 35.13630 * 9 7 2 11 11 O 1.45204 * 109.47087 * 275.14004 * 9 7 2 12 12 C 1.34226 * 117.00079 * 149.99623 * 11 9 7 13 13 O 1.20828 * 119.99567 * 359.97438 * 12 11 9 14 14 C 1.50695 * 120.00197 * 179.97438 * 12 11 9 15 15 H 1.08995 * 109.39292 * 299.80561 * 14 12 11 16 16 C 1.52578 * 109.39159 * 180.02562 * 14 12 11 17 17 C 1.52582 * 110.72778 * 169.17628 * 16 14 12 18 18 C 1.53107 * 109.95499 * 70.67534 * 17 16 14 19 19 S 1.81747 * 108.84128 * 296.97741 * 18 17 16 20 20 C 1.53098 * 109.38715 * 59.50564 * 14 12 11 21 21 C 1.53001 * 109.47214 * 155.13638 * 9 7 2 22 22 C 1.52990 * 117.49635 * 244.14207 * 21 9 7 23 23 C 1.52993 * 60.00231 * 252.51265 * 22 21 9 24 24 H 0.97000 * 120.00054 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.23004 * 289.49887 * 16 14 12 26 26 H 1.09000 * 109.22390 * 48.85850 * 16 14 12 27 27 H 1.08998 * 109.39024 * 190.82203 * 17 16 14 28 28 H 1.08995 * 109.39184 * 310.62927 * 17 16 14 29 29 H 1.09001 * 109.56898 * 56.78561 * 18 17 16 30 30 H 1.08999 * 109.57463 * 177.16890 * 18 17 16 31 31 H 1.08995 * 109.58024 * 302.98064 * 20 14 12 32 32 H 1.09006 * 109.57436 * 63.36821 * 20 14 12 33 33 H 1.08997 * 115.54678 * 29.85063 * 21 9 7 34 34 H 1.08999 * 117.50406 * 0.02562 * 22 21 9 35 35 H 1.09008 * 117.50058 * 145.02498 * 22 21 9 36 36 H 1.09002 * 117.50166 * 252.51795 * 23 22 21 37 37 H 1.09002 * 117.50298 * 107.49144 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6094 1.9814 -1.3940 5 1 1.3948 2.6825 0.5843 6 1 3.4858 1.4753 0.8098 7 6 2.0046 -1.1940 -0.0005 8 1 1.4677 -2.1276 -0.0833 9 6 3.5072 -1.1967 0.1142 10 1 3.8230 -0.3840 0.7684 11 8 4.0935 -1.0144 -1.2016 12 6 5.2819 -0.3932 -1.2585 13 8 5.8145 -0.0138 -0.2425 14 6 5.9520 -0.1689 -2.5896 15 1 6.1362 -1.1304 -3.0686 16 6 7.2795 0.5515 -2.3735 17 6 8.1053 0.5585 -3.6565 18 6 7.4651 1.4950 -4.6848 19 16 5.8182 0.8574 -5.1142 20 6 5.0384 0.6748 -3.4827 21 6 3.9717 -2.5320 0.6991 22 6 4.6634 -2.5032 2.0634 23 6 5.4792 -2.7737 0.7978 24 1 -0.4850 0.8400 0.0004 25 1 7.0846 1.5790 -2.0665 26 1 7.8400 0.0434 -1.5887 27 1 9.1158 0.9013 -3.4346 28 1 8.1472 -0.4510 -4.0654 29 1 7.3705 2.4941 -4.2595 30 1 8.0863 1.5341 -5.5796 31 1 4.0744 0.1781 -3.5919 32 1 4.8960 1.6581 -3.0342 33 1 3.3381 -3.3897 0.4736 34 1 4.7871 -1.5331 2.5446 35 1 4.4848 -3.3422 2.7361 36 1 5.8374 -3.7907 0.6376 37 1 6.1402 -1.9815 0.4460 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346708206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:39 Heat of formation + Delta-G solvation = -93.685399 kcal Electronic energy + Delta-G solvation = -19504.062273 eV Core-core repulsion = 16565.185725 eV Total energy + Delta-G solvation = -2938.876548 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.65876 -38.78371 -37.32457 -36.71903 -34.95238 -32.95581 -30.59273 -28.32166 -25.86294 -24.85091 -23.28264 -22.77804 -21.35335 -20.97599 -19.39151 -18.64829 -18.03322 -17.50637 -16.96884 -16.34796 -16.03494 -15.61941 -15.50174 -15.04777 -14.65147 -14.46306 -14.26292 -13.99995 -13.65908 -13.46342 -13.26147 -12.93209 -12.66005 -12.52031 -12.32928 -12.12958 -12.04368 -11.94907 -11.81880 -11.38665 -11.21551 -11.01346 -10.98252 -10.82018 -10.67308 -8.78223 -8.56577 -6.67677 0.62511 1.14009 1.16844 1.21369 1.27997 1.51695 1.92660 2.11157 2.93086 2.99794 3.47135 3.53263 3.73789 3.84873 3.88516 4.01421 4.04287 4.10049 4.20149 4.32526 4.46734 4.51737 4.58586 4.70745 4.76314 4.78469 4.80250 4.95736 4.99220 5.04293 5.22792 5.24532 5.27228 5.34464 5.81492 6.11622 6.45684 6.96505 7.02807 8.57245 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.018268 B = 0.007401 C = 0.005940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.352908 B = 3782.436424 C = 4713.055613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.205 3.795 10 H 0.042 0.958 11 O -0.365 6.365 12 C 0.448 3.552 13 O -0.541 6.541 14 C -0.078 4.078 15 H 0.131 0.869 16 C -0.112 4.112 17 C -0.110 4.110 18 C -0.080 4.080 19 S -0.270 6.270 20 C -0.075 4.075 21 C -0.168 4.168 22 C -0.162 4.162 23 C -0.178 4.178 24 H 0.277 0.723 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.132 0.868 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.396 1.571 -7.070 18.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.158 4.158 3 Si 0.738 3.262 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.154 3.846 10 H 0.059 0.941 11 O -0.281 6.281 12 C 0.291 3.709 13 O -0.433 6.433 14 C -0.099 4.099 15 H 0.148 0.852 16 C -0.150 4.150 17 C -0.149 4.149 18 C -0.227 4.227 19 S -0.042 6.042 20 C -0.223 4.223 21 C -0.187 4.187 22 C -0.199 4.199 23 C -0.215 4.215 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.125 0.875 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.150 0.850 31 H 0.121 0.879 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 16.894 1.567 -7.791 18.670 hybrid contribution -0.150 1.004 1.469 1.786 sum 16.745 2.571 -6.322 18.082 Atomic orbital electron populations 1.69961 1.07576 1.28979 1.48246 1.25758 0.95419 1.02242 0.92393 0.86238 0.79675 0.80195 0.80084 1.18404 1.19313 1.18486 1.21096 0.88910 0.94199 1.50894 0.92641 1.20513 0.91149 0.93686 0.79296 0.94071 1.86937 1.32549 1.68792 1.39835 1.24224 0.80466 0.73941 0.92276 1.90532 1.65014 1.49578 1.38184 1.21437 0.95682 1.03021 0.89754 0.85160 1.21457 0.92958 1.00633 0.99956 1.21716 0.99749 1.00927 0.92486 1.23684 0.93118 1.01684 1.04247 1.86946 1.18265 1.86888 1.12119 1.23301 1.01371 1.02495 0.95176 1.22530 0.95320 0.98834 1.01968 1.22943 1.03267 1.03140 0.90509 1.23145 0.92973 1.03211 1.02151 0.91363 0.91991 0.89914 0.87477 0.89570 0.89250 0.85022 0.87938 0.90583 0.88196 0.90128 0.86434 0.86833 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.69 13.96 21.45 0.30 -54.39 16 2 C 0.05 2.62 5.47 84.65 0.46 3.08 16 3 Si 0.91 44.82 27.34 68.60 1.88 46.70 16 4 H -0.26 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.26 -12.90 6.15 99.48 0.61 -12.29 16 7 C -0.51 -29.50 9.24 25.60 0.24 -29.27 16 8 H 0.06 3.43 7.96 -2.91 -0.02 3.41 16 9 C 0.21 10.16 1.62 29.85 0.05 10.20 16 10 H 0.04 2.17 4.49 -2.39 -0.01 2.16 16 11 O -0.36 -16.81 9.27 -51.37 -0.48 -17.29 16 12 C 0.45 17.65 6.25 71.23 0.45 18.09 16 13 O -0.54 -23.08 12.98 21.96 0.28 -22.80 16 14 C -0.08 -2.28 2.47 -11.65 -0.03 -2.31 16 15 H 0.13 3.39 8.05 -2.39 -0.02 3.37 16 16 C -0.11 -2.60 4.38 30.32 0.13 -2.47 16 17 C -0.11 -1.69 5.75 30.49 0.18 -1.51 16 18 C -0.08 -1.28 6.46 72.02 0.46 -0.82 16 19 S -0.27 -6.58 22.33 -56.49 -1.26 -7.84 16 20 C -0.07 -2.26 5.68 72.01 0.41 -1.85 16 21 C -0.17 -7.09 5.44 -10.80 -0.06 -7.15 16 22 C -0.16 -5.75 10.18 30.59 0.31 -5.44 16 23 C -0.18 -6.18 9.78 30.59 0.30 -5.88 16 24 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 25 H 0.06 1.54 8.08 -2.39 -0.02 1.52 16 26 H 0.08 1.97 7.70 -2.39 -0.02 1.95 16 27 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.09 1.26 8.05 -2.39 -0.02 1.24 16 29 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.10 3.50 8.03 -2.39 -0.02 3.48 16 32 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 33 H 0.10 4.23 8.00 -2.39 -0.02 4.21 16 34 H 0.08 3.02 8.03 -2.39 -0.02 3.00 16 35 H 0.12 3.45 8.14 -2.38 -0.02 3.43 16 36 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 37 H 0.09 3.29 5.25 -2.39 -0.01 3.28 16 Total: -1.00 -65.82 309.75 4.58 -61.24 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.96 Total: 19.69 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: 2.90 Total: -25.32 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 0.30 Total: -54.39 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -0.19 Total: -40.08 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Atomic # 16 Polarization: -6.58 SS G_CDS: -1.26 Total: -7.84 kcal Total: -65.82 4.58 -61.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346708206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.442 kcal (2) G-P(sol) polarization free energy of solvation -65.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds