Wall clock time and date at job start Mon Mar 30 2020 01:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99668 * 2 1 4 4 H 1.48500 * 109.47234 * 89.73231 * 3 2 1 5 5 H 1.48500 * 109.46887 * 209.72615 * 3 2 1 6 6 H 1.48496 * 109.47197 * 329.72593 * 3 2 1 7 7 C 1.37878 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00208 * 3.59677 * 7 2 1 9 9 C 1.50705 * 119.99943 * 183.60760 * 7 2 1 10 10 H 1.09005 * 109.46591 * 24.57349 * 9 7 2 11 11 O 1.45198 * 109.46973 * 264.57698 * 9 7 2 12 12 C 1.34224 * 116.99998 * 149.99562 * 11 9 7 13 13 O 1.20822 * 120.00146 * 0.02562 * 12 11 9 14 14 C 1.50707 * 120.00003 * 179.97438 * 12 11 9 15 15 H 1.08997 * 109.38495 * 60.00077 * 14 12 11 16 16 C 1.52580 * 109.38988 * 179.80569 * 14 12 11 17 17 C 1.52625 * 110.70256 * 190.92362 * 16 14 12 18 18 C 1.53095 * 109.87189 * 289.18001 * 17 16 14 19 19 S 1.81754 * 108.84109 * 63.06324 * 18 17 16 20 20 C 1.53099 * 109.38794 * 300.20145 * 14 12 11 21 21 C 1.52995 * 109.46930 * 144.57571 * 9 7 2 22 22 C 1.53004 * 117.49853 * 253.97173 * 21 9 7 23 23 C 1.53001 * 60.00154 * 252.51786 * 22 21 9 24 24 H 0.96998 * 120.00310 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.22678 * 311.14613 * 16 14 12 26 26 H 1.09002 * 109.22726 * 70.50462 * 16 14 12 27 27 H 1.09001 * 109.39872 * 169.07634 * 17 16 14 28 28 H 1.08996 * 109.37966 * 49.27111 * 17 16 14 29 29 H 1.08997 * 109.58074 * 303.25489 * 18 17 16 30 30 H 1.08997 * 109.57859 * 182.86492 * 18 17 16 31 31 H 1.08995 * 109.57904 * 296.63201 * 20 14 12 32 32 H 1.09001 * 109.57644 * 57.02231 * 20 14 12 33 33 H 1.08990 * 115.55456 * 39.68407 * 21 9 7 34 34 H 1.08999 * 117.49657 * 0.02562 * 22 21 9 35 35 H 1.09001 * 117.49530 * 145.02204 * 22 21 9 36 36 H 1.09006 * 117.49097 * 252.51097 * 23 22 21 37 37 H 1.08994 * 117.50223 * 107.49425 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4909 2.0498 1.4000 5 1 3.5495 1.4386 -0.6942 6 1 1.4494 2.6510 -0.7058 7 6 2.0046 -1.1941 -0.0005 8 1 1.4662 -2.1284 -0.0596 9 6 3.5094 -1.1954 0.0816 10 1 3.8480 -0.2751 0.5578 11 8 4.0670 -1.2816 -1.2563 12 6 5.2598 -0.7002 -1.4579 13 8 5.8197 -0.1381 -0.5467 14 6 5.9013 -0.7493 -2.8208 15 1 5.2463 -0.2674 -3.5465 16 6 7.2379 -0.0146 -2.7783 17 6 7.7863 0.1897 -4.1879 18 6 8.2464 -1.1508 -4.7667 19 16 6.8086 -2.2535 -4.9085 20 6 6.1223 -2.2090 -3.2261 21 6 3.9740 -2.3973 0.9063 22 6 4.4866 -2.1268 2.3223 23 6 5.4689 -2.5081 1.2130 24 1 -0.4850 0.8400 -0.0004 25 1 7.0985 0.9570 -2.3044 26 1 7.9502 -0.5986 -2.1955 27 1 8.6312 0.8774 -4.1515 28 1 7.0055 0.6090 -4.8225 29 1 8.9869 -1.5996 -4.1047 30 1 8.6835 -0.9922 -5.7525 31 1 6.8214 -2.6784 -2.5340 32 1 5.1716 -2.7418 -3.2053 33 1 3.4248 -3.3236 0.7379 34 1 4.4924 -1.0926 2.6664 35 1 4.2744 -2.8752 3.0858 36 1 5.9030 -3.5074 1.2468 37 1 6.1213 -1.7248 0.8272 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346708207.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:41 Heat of formation + Delta-G solvation = -80.747608 kcal Electronic energy + Delta-G solvation = -19406.440644 eV Core-core repulsion = 16468.125121 eV Total energy + Delta-G solvation = -2938.315523 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.95852 -37.30660 -36.04800 -35.00804 -32.84757 -31.89028 -28.62420 -27.29658 -24.42429 -23.09348 -21.78882 -21.63659 -19.91220 -19.30640 -17.60036 -16.90343 -16.62057 -15.91059 -15.43303 -15.00353 -14.63468 -14.37142 -13.89156 -13.65048 -13.39438 -13.13167 -12.87832 -12.56473 -12.12068 -11.67758 -11.54089 -11.40283 -11.35502 -11.09331 -10.96893 -10.91737 -10.84519 -10.30633 -9.94183 -9.80810 -9.63378 -9.40262 -9.34254 -9.02065 -8.88457 -7.76974 -6.40942 -4.47776 1.66482 2.36069 2.96019 3.12347 3.23355 3.31516 3.54823 4.18422 4.48866 4.57041 4.65288 4.72463 4.81398 5.00063 5.10371 5.28964 5.34602 5.44127 5.53826 5.59348 5.64228 5.65550 5.74182 5.81583 5.96014 6.05871 6.15026 6.18288 6.24921 6.44809 6.61214 6.72019 6.94490 7.33010 7.59856 8.19222 8.68910 8.70551 9.19669 10.68722 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.020493 B = 0.006345 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.007726 B = 4411.808172 C = 4852.520855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.086 3.914 3 Si 0.875 3.125 4 H -0.271 1.271 5 H -0.261 1.261 6 H -0.281 1.281 7 C -0.503 4.503 8 H 0.085 0.915 9 C 0.205 3.795 10 H 0.051 0.949 11 O -0.351 6.351 12 C 0.457 3.543 13 O -0.527 6.527 14 C -0.089 4.089 15 H 0.113 0.887 16 C -0.115 4.115 17 C -0.120 4.120 18 C -0.085 4.085 19 S -0.261 6.261 20 C -0.067 4.067 21 C -0.135 4.135 22 C -0.170 4.170 23 C -0.204 4.204 24 H 0.272 0.728 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.662 -1.357 -6.395 16.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.121 4.121 3 Si 0.701 3.299 4 H -0.196 1.196 5 H -0.185 1.185 6 H -0.207 1.207 7 C -0.539 4.539 8 H 0.103 0.897 9 C 0.154 3.846 10 H 0.069 0.931 11 O -0.267 6.267 12 C 0.298 3.702 13 O -0.418 6.418 14 C -0.110 4.110 15 H 0.131 0.869 16 C -0.153 4.153 17 C -0.159 4.159 18 C -0.233 4.233 19 S -0.033 6.033 20 C -0.215 4.215 21 C -0.154 4.154 22 C -0.207 4.207 23 C -0.241 4.241 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.122 0.878 31 H 0.106 0.894 32 H 0.140 0.860 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 14.241 -1.701 -7.009 15.964 hybrid contribution 0.733 1.532 1.175 2.065 sum 14.974 -0.169 -5.834 16.072 Atomic orbital electron populations 1.69875 1.06362 1.27982 1.46189 1.25164 0.94872 0.99462 0.92598 0.86866 0.80623 0.83131 0.79325 1.19638 1.18539 1.20651 1.20901 0.86824 0.95288 1.50840 0.89662 1.20662 0.93352 0.93260 0.77314 0.93139 1.87023 1.30818 1.68497 1.40375 1.23286 0.81353 0.75771 0.89741 1.90513 1.63968 1.42490 1.44852 1.21310 0.98065 0.96766 0.94878 0.86915 1.21424 0.94873 1.02215 0.96748 1.21756 1.01716 0.95982 0.96467 1.23495 0.97510 0.97219 1.05113 1.86905 1.34991 1.63455 1.17992 1.23387 1.05462 0.97808 0.94860 1.22608 0.94269 1.01134 0.97375 1.22778 1.04170 1.01937 0.91809 1.23187 0.93944 1.02076 1.04918 0.91790 0.89850 0.91102 0.90453 0.90342 0.89837 0.87830 0.89427 0.85990 0.88004 0.89262 0.89356 0.90068 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.26 13.96 55.43 0.77 -24.49 16 2 C 0.09 2.42 5.47 -17.82 -0.10 2.32 16 3 Si 0.87 21.54 26.96 -169.99 -4.58 16.95 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.26 -6.50 6.65 56.52 0.38 -6.13 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.50 -13.87 9.25 -34.44 -0.32 -14.19 16 8 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 9 C 0.21 4.98 1.72 -27.88 -0.05 4.93 16 10 H 0.05 1.29 4.40 -51.93 -0.23 1.06 16 11 O -0.35 -8.02 9.70 -39.24 -0.38 -8.40 16 12 C 0.46 9.14 6.45 36.01 0.23 9.37 16 13 O -0.53 -11.44 12.72 -18.75 -0.24 -11.68 16 14 C -0.09 -1.36 2.48 -91.93 -0.23 -1.58 16 15 H 0.11 1.69 8.05 -51.93 -0.42 1.28 16 16 C -0.12 -1.48 4.38 -27.14 -0.12 -1.60 16 17 C -0.12 -1.19 5.76 -26.87 -0.15 -1.34 16 18 C -0.09 -0.81 6.45 37.21 0.24 -0.57 16 19 S -0.26 -3.22 22.33 -107.50 -2.40 -5.62 16 20 C -0.07 -0.91 5.67 37.21 0.21 -0.70 16 21 C -0.14 -2.85 5.34 -90.62 -0.48 -3.33 16 22 C -0.17 -3.16 10.18 -26.73 -0.27 -3.44 16 23 C -0.20 -3.74 9.82 -26.73 -0.26 -4.00 16 24 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.08 1.17 7.70 -51.93 -0.40 0.77 16 26 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.12 1.77 8.04 -51.93 -0.42 1.35 16 33 H 0.10 2.11 8.14 -51.93 -0.42 1.68 16 34 H 0.09 1.71 8.08 -51.93 -0.42 1.29 16 35 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.10 2.00 5.58 -51.93 -0.29 1.71 16 LS Contribution 310.82 15.07 4.68 4.68 Total: -1.00 -29.68 310.82 -9.00 -38.68 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.55 Total: 4.00 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -1.30 Total: -14.13 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 0.77 Total: -24.49 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.62 Total: -20.08 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.58 Total: 16.95 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.40 Total: -5.62 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.68 -9.00 -38.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346708207.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.066 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds