Wall clock time and date at job start Mon Mar 30 2020 01:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00206 * 2 1 4 4 H 1.48497 * 109.47109 * 240.00121 * 3 2 1 5 5 H 1.48496 * 109.47059 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46928 * 120.00253 * 3 2 1 7 7 C 1.37881 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00237 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99619 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.47271 * 60.00055 * 9 7 2 11 11 O 1.45199 * 109.46988 * 179.97438 * 9 7 2 12 12 C 1.34234 * 117.00492 * 209.99870 * 11 9 7 13 13 O 1.20831 * 119.99470 * 0.02562 * 12 11 9 14 14 C 1.50695 * 120.00243 * 180.02562 * 12 11 9 15 15 H 1.09002 * 109.38904 * 60.00206 * 14 12 11 16 16 C 1.52583 * 109.39026 * 179.80554 * 14 12 11 17 17 C 1.52405 * 110.82238 * 190.84587 * 16 14 12 18 18 C 1.53100 * 109.89115 * 289.23658 * 17 16 14 19 19 S 1.81744 * 108.83878 * 63.02252 * 18 17 16 20 20 C 1.53100 * 109.39024 * 300.20015 * 14 12 11 21 21 C 1.53000 * 109.47328 * 299.99705 * 9 7 2 22 22 C 1.53001 * 117.49896 * 248.74542 * 21 9 7 23 23 C 1.53004 * 117.49771 * 180.08847 * 21 9 7 24 24 H 0.97005 * 119.99543 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.22310 * 311.04590 * 16 14 12 26 26 H 1.08996 * 109.22676 * 70.39934 * 16 14 12 27 27 H 1.09000 * 109.42569 * 169.10706 * 17 16 14 28 28 H 1.08997 * 109.34002 * 49.31461 * 17 16 14 29 29 H 1.08995 * 109.57201 * 303.21459 * 18 17 16 30 30 H 1.08999 * 109.57586 * 182.82394 * 18 17 16 31 31 H 1.09001 * 109.57474 * 296.73476 * 20 14 12 32 32 H 1.08991 * 109.57581 * 57.11904 * 20 14 12 33 33 H 1.08993 * 115.54744 * 34.42537 * 21 9 7 34 34 H 1.08995 * 117.49730 * 0.02562 * 22 21 9 35 35 H 1.09004 * 117.49518 * 145.02139 * 22 21 9 36 36 H 1.08999 * 117.49793 * 214.98249 * 23 21 9 37 37 H 1.09001 * 117.49698 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6246 -2.5570 -0.8897 11 8 2.1944 -3.6028 0.0005 12 6 1.8032 -4.7391 -0.5974 13 8 0.7087 -4.8090 -1.1045 14 6 2.7290 -5.9275 -0.6363 15 1 2.9679 -6.2336 0.3822 16 6 2.0434 -7.0801 -1.3641 17 6 2.8310 -8.3736 -1.1933 18 6 4.1333 -8.3002 -1.9951 19 16 5.1595 -6.9577 -1.3260 20 6 4.0182 -5.5438 -1.3674 21 6 0.3709 -2.5799 1.2495 22 6 0.7520 -3.6075 2.3170 23 6 -0.4777 -3.8394 1.4355 24 1 -0.4850 0.8401 0.0004 25 1 1.0415 -7.2166 -0.9567 26 1 1.9692 -6.8413 -2.4250 27 1 2.2330 -9.2121 -1.5504 28 1 3.0633 -8.5182 -0.1383 29 1 3.9066 -8.0996 -3.0421 30 1 4.6684 -9.2460 -1.9099 31 1 3.7893 -5.2894 -2.4023 32 1 4.4781 -4.6887 -0.8723 33 1 -0.0511 -1.6341 1.5891 34 1 1.6299 -4.2257 2.1297 35 1 0.5805 -3.3379 3.3591 36 1 -1.4578 -3.7222 1.8979 37 1 -0.4093 -4.6102 0.6678 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346708209.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:42 Heat of formation + Delta-G solvation = -92.102130 kcal Electronic energy + Delta-G solvation = -19296.516670 eV Core-core repulsion = 16357.708778 eV Total energy + Delta-G solvation = -2938.807892 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.72339 -38.79729 -37.27815 -36.53661 -34.88916 -32.92811 -29.93459 -28.28252 -25.99859 -24.90675 -23.23980 -22.79189 -21.42496 -20.68573 -19.06018 -18.41765 -17.82601 -17.65859 -16.95677 -16.26003 -16.11673 -15.65756 -15.39377 -14.72632 -14.51316 -14.27522 -14.08589 -13.97236 -13.43129 -13.27888 -13.05422 -12.79445 -12.65109 -12.49608 -12.34577 -12.22347 -12.05720 -12.00323 -11.91529 -11.36561 -11.29350 -11.03300 -10.67956 -10.48802 -10.43754 -8.73358 -8.27734 -6.44179 0.67610 1.20801 1.41261 1.44339 1.51718 1.54568 2.01031 2.41325 3.00080 3.13632 3.50155 3.54458 3.73571 3.87747 4.05137 4.05733 4.14474 4.24755 4.27265 4.35642 4.49874 4.61311 4.74038 4.77449 4.80548 4.87425 4.95591 5.03054 5.06617 5.23008 5.25958 5.27604 5.50684 5.55414 5.88946 6.09623 6.60104 6.94647 7.26439 8.79330 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.024396 B = 0.005390 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.441634 B = 5193.218053 C = 5901.168048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.021 3.979 3 Si 0.976 3.024 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.256 3.744 10 H 0.005 0.995 11 O -0.355 6.355 12 C 0.453 3.547 13 O -0.539 6.539 14 C -0.070 4.070 15 H 0.128 0.872 16 C -0.113 4.113 17 C -0.111 4.111 18 C -0.079 4.079 19 S -0.269 6.269 20 C -0.070 4.070 21 C -0.149 4.149 22 C -0.167 4.167 23 C -0.199 4.199 24 H 0.269 0.731 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.130 0.870 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.709 -15.490 -0.783 16.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.180 4.180 3 Si 0.800 3.200 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.202 3.798 10 H 0.023 0.977 11 O -0.271 6.271 12 C 0.296 3.704 13 O -0.430 6.430 14 C -0.091 4.091 15 H 0.146 0.854 16 C -0.151 4.151 17 C -0.149 4.149 18 C -0.227 4.227 19 S -0.042 6.042 20 C -0.218 4.218 21 C -0.167 4.167 22 C -0.203 4.203 23 C -0.236 4.236 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.123 0.877 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.148 0.852 31 H 0.103 0.897 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.322 -15.392 -0.592 17.055 hybrid contribution -1.453 1.407 -0.573 2.103 sum 5.868 -13.985 -1.165 15.210 Atomic orbital electron populations 1.70098 1.07400 1.28376 1.49156 1.25762 0.95847 1.02638 0.93709 0.85334 0.78175 0.77261 0.79272 1.19378 1.20346 1.18934 1.21208 0.93971 0.89675 1.53423 0.91504 1.19708 0.85932 0.81251 0.92861 0.97685 1.86481 1.48555 1.22521 1.69534 1.24256 0.86880 0.85241 0.74060 1.90569 1.24242 1.83640 1.44585 1.21367 0.92980 0.90530 1.04223 0.85423 1.21420 0.99973 0.93115 1.00560 1.21681 0.94708 0.96699 1.01827 1.23657 0.97983 0.98845 1.02239 1.86961 1.24128 1.07302 1.85760 1.23285 0.95445 0.99470 1.03649 1.22732 1.01377 0.93962 0.98668 1.22879 0.98128 1.03129 0.96199 1.23136 0.95680 1.01354 1.03455 0.92165 0.90650 0.91646 0.87734 0.89717 0.89080 0.85225 0.89708 0.87323 0.87877 0.89111 0.87940 0.88844 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.37 11.59 21.45 0.25 -52.13 16 2 C 0.02 1.14 5.20 84.66 0.44 1.58 16 3 Si 0.98 42.83 29.54 68.60 2.03 44.85 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.55 -30.69 8.90 25.60 0.23 -30.46 16 8 H 0.07 3.68 7.81 -2.91 -0.02 3.66 16 9 C 0.26 13.78 2.41 29.85 0.07 13.85 16 10 H 0.01 0.34 7.16 -2.38 -0.02 0.32 16 11 O -0.35 -16.39 8.23 -51.45 -0.42 -16.82 16 12 C 0.45 18.03 6.19 71.23 0.44 18.47 16 13 O -0.54 -24.49 12.83 21.95 0.28 -24.21 16 14 C -0.07 -1.97 2.48 -11.65 -0.03 -1.99 16 15 H 0.13 3.22 8.05 -2.39 -0.02 3.20 16 16 C -0.11 -2.60 4.36 30.26 0.13 -2.47 16 17 C -0.11 -1.67 5.75 30.43 0.18 -1.50 16 18 C -0.08 -1.19 6.45 72.02 0.46 -0.72 16 19 S -0.27 -5.92 22.33 -56.49 -1.26 -7.18 16 20 C -0.07 -1.87 5.68 72.02 0.41 -1.46 16 21 C -0.15 -7.42 5.27 -10.79 -0.06 -7.48 16 22 C -0.17 -6.74 9.80 30.62 0.30 -6.44 16 23 C -0.20 -8.55 9.85 30.62 0.30 -8.25 16 24 H 0.27 14.53 8.31 -92.70 -0.77 13.76 16 25 H 0.07 1.90 7.70 -2.38 -0.02 1.88 16 26 H 0.06 1.59 8.08 -2.39 -0.02 1.57 16 27 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.08 1.24 8.05 -2.39 -0.02 1.22 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.11 3.17 8.04 -2.39 -0.02 3.15 16 33 H 0.10 5.70 6.46 -2.39 -0.02 5.68 16 34 H 0.09 3.53 6.91 -2.39 -0.02 3.52 16 35 H 0.10 3.64 8.14 -2.38 -0.02 3.62 16 36 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 37 H 0.09 3.82 5.37 -2.39 -0.01 3.80 16 Total: -1.00 -64.48 308.96 4.80 -59.68 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 1.05 Total: 22.67 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: 2.88 Total: -26.87 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.25 Total: -52.13 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -0.14 Total: -41.03 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -5.92 SS G_CDS: -1.26 Total: -7.18 kcal Total: -64.48 4.80 -59.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346708209.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.420 kcal (2) G-P(sol) polarization free energy of solvation -64.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds