Wall clock time and date at job start Mon Mar 30 2020 01:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.47384 * 125.37887 * 2 1 4 4 C 1.54110 * 103.70529 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.55081 * 118.77408 * 4 3 2 6 6 C 1.50698 * 110.54706 * 241.44729 * 4 3 2 7 7 O 1.21283 * 120.00472 * 97.99820 * 6 4 3 8 8 N 1.34777 * 119.99538 * 277.99158 * 6 4 3 9 9 C 1.46499 * 119.99665 * 179.72653 * 8 6 4 10 10 C 1.50703 * 109.47138 * 180.28062 * 9 8 6 11 11 O 1.21293 * 120.00086 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00069 * 180.02562 * 10 9 8 13 13 C 1.37097 * 120.00084 * 179.97438 * 12 10 9 14 14 H 1.08001 * 120.00027 * 359.97438 * 13 12 10 15 15 C 1.38954 * 119.99944 * 179.97438 * 13 12 10 16 16 N 1.31410 * 120.00281 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99680 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47237 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47068 * 120.00289 * 17 15 13 20 20 H 1.48497 * 109.46988 * 240.00248 * 17 15 13 21 21 N 1.47060 * 103.98460 * 0.10813 * 4 3 2 22 22 C 1.33942 * 109.18396 * 359.93127 * 21 4 3 23 23 O 1.21584 * 123.04393 * 180.02562 * 22 21 4 24 24 H 1.09003 * 109.47146 * 179.88438 * 1 2 3 25 25 H 1.09002 * 109.46718 * 299.88220 * 1 2 3 26 26 H 1.08997 * 109.47593 * 59.87870 * 1 2 3 27 27 H 1.09002 * 110.59348 * 61.44061 * 3 2 1 28 28 H 1.09007 * 110.66109 * 298.52608 * 3 2 1 29 29 H 0.97001 * 120.00485 * 0.02562 * 8 6 4 30 30 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 31 31 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 32 32 H 0.97002 * 120.00050 * 359.97438 * 12 10 9 33 33 H 0.96997 * 119.99897 * 179.97438 * 16 15 13 34 34 H 0.97004 * 125.40661 * 179.97438 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3183 1.2017 0.0000 4 6 3.7504 0.6325 0.0007 5 1 4.2878 0.9475 -0.8938 6 6 4.4906 1.0643 1.2403 7 8 4.5690 0.3159 2.1915 8 7 5.0655 2.2822 1.2919 9 6 5.7800 2.7043 2.4993 10 6 6.3189 4.0979 2.3027 11 8 6.1257 4.6809 1.2568 12 7 7.0165 4.6959 3.2887 13 6 7.5072 5.9634 3.1097 14 1 7.3352 6.4826 2.1784 15 6 8.2260 6.5802 4.1265 16 7 8.4349 5.9488 5.2598 17 14 8.8952 8.3071 3.8822 18 1 8.5254 8.7945 2.5292 19 1 8.3177 9.2115 4.9086 20 1 10.3741 8.2881 4.0149 21 7 3.5537 -0.8249 -0.0017 22 6 2.2411 -1.0918 -0.0020 23 8 1.7946 -2.2226 -0.0034 24 1 -0.3633 -1.0277 -0.0021 25 1 -0.3633 0.5120 0.8911 26 1 -0.3634 0.5157 -0.8888 27 1 2.1425 1.7967 0.8962 28 1 2.1438 1.7973 -0.8961 29 1 5.0026 2.8809 0.5314 30 1 5.0960 2.6957 3.3480 31 1 6.6057 2.0191 2.6911 32 1 7.1713 4.2295 4.1250 33 1 8.9370 6.3792 5.9694 34 1 4.2620 -1.4876 -0.0023 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347786525.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:27 Heat of formation + Delta-G solvation = -110.371580 kcal Electronic energy + Delta-G solvation = -20141.068541 eV Core-core repulsion = 16687.467963 eV Total energy + Delta-G solvation = -3453.600578 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.41863 -40.74399 -39.78047 -37.40532 -36.25402 -35.36940 -35.08159 -33.35815 -31.02219 -29.14945 -27.98985 -26.41929 -24.63436 -21.69122 -21.60200 -21.36535 -20.07983 -19.10465 -18.72807 -17.59111 -17.44645 -16.87786 -16.72196 -16.64755 -16.17075 -15.71116 -15.57794 -15.15628 -15.11236 -14.83377 -14.50606 -13.96646 -13.77513 -13.53452 -13.36839 -13.21353 -12.95024 -12.88347 -12.42335 -12.09625 -11.58032 -11.55736 -11.41408 -10.54816 -10.43783 -10.24852 -10.06993 -9.61139 -8.49787 -5.99591 1.28726 1.36851 1.44946 1.56233 1.59527 1.78653 1.93182 2.10459 2.31802 2.87298 3.13850 3.17983 3.26490 3.52901 3.89480 4.10903 4.22947 4.43580 4.45178 4.49654 4.56161 4.72301 4.86553 4.93344 5.20520 5.40590 5.61059 5.93557 6.00520 6.30906 6.44755 6.51323 7.05208 7.07406 7.42570 7.46820 7.95905 8.67241 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.049867 B = 0.003176 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.355536 B = 8814.057365 C = 9031.682709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.637 5.637 3 C 0.105 3.895 4 C 0.112 3.888 5 H 0.161 0.839 6 C 0.504 3.496 7 O -0.572 6.572 8 N -0.694 5.694 9 C 0.120 3.880 10 C 0.435 3.565 11 O -0.619 6.619 12 N -0.562 5.562 13 C -0.334 4.334 14 H 0.089 0.911 15 C -0.011 4.011 16 N -0.918 5.918 17 Si 0.995 3.005 18 H -0.267 1.267 19 H -0.273 1.273 20 H -0.274 1.274 21 N -0.713 5.713 22 C 0.693 3.307 23 O -0.634 6.634 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.140 0.860 29 H 0.420 0.580 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.398 0.602 33 H 0.279 0.721 34 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.582 -5.783 -10.179 15.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.376 5.376 3 C -0.018 4.018 4 C 0.002 3.998 5 H 0.179 0.821 6 C 0.289 3.711 7 O -0.451 6.451 8 N -0.349 5.349 9 C -0.008 4.008 10 C 0.222 3.778 11 O -0.507 6.507 12 N -0.197 5.197 13 C -0.463 4.463 14 H 0.107 0.893 15 C -0.212 4.212 16 N -0.558 5.558 17 Si 0.819 3.181 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.199 1.199 21 N -0.373 5.373 22 C 0.393 3.607 23 O -0.516 6.516 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.158 0.842 29 H 0.260 0.740 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.232 0.768 33 H 0.088 0.912 34 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -10.960 -6.386 -10.010 16.159 hybrid contribution 1.024 0.454 0.610 1.276 sum -9.936 -5.932 -9.399 14.909 Atomic orbital electron populations 1.21636 0.74048 1.03588 1.03552 1.47288 1.07414 1.05469 1.77441 1.22643 0.84418 0.88179 1.06550 1.22054 0.98244 0.82026 0.97460 0.82137 1.21269 0.79048 0.80986 0.89837 1.90746 1.61234 1.53995 1.39077 1.45617 1.53785 1.16988 1.18488 1.20782 0.97906 0.92754 0.89333 1.20387 0.83560 0.88969 0.84894 1.90478 1.64125 1.67472 1.28645 1.41875 1.46928 1.15236 1.15687 1.19783 1.32313 0.92033 1.02207 0.89296 1.26111 0.96921 1.03791 0.94377 1.69683 1.40666 1.39937 1.05522 0.84829 0.77920 0.76836 0.78537 1.19160 1.19867 1.19911 1.44867 1.06409 1.07272 1.78791 1.16122 0.82500 0.84714 0.77350 1.90906 1.76775 1.22967 1.60936 0.91259 0.90702 0.88988 0.89326 0.84182 0.74028 0.88864 0.88871 0.76820 0.91178 0.72228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.59 11.22 127.77 1.43 3.03 16 2 N -0.64 -12.40 3.36 -862.56 -2.90 -15.31 16 3 C 0.11 1.41 7.34 86.59 0.64 2.05 16 4 C 0.11 1.84 4.16 44.51 0.19 2.03 16 5 H 0.16 1.39 8.14 -2.39 -0.02 1.37 16 6 C 0.50 12.39 6.94 87.66 0.61 13.00 16 7 O -0.57 -19.22 16.58 -3.04 -0.05 -19.27 16 8 N -0.69 -17.75 5.53 -466.78 -2.58 -20.33 16 9 C 0.12 3.82 6.15 85.63 0.53 4.35 16 10 C 0.43 18.15 7.85 87.66 0.69 18.84 16 11 O -0.62 -28.71 15.24 -3.07 -0.05 -28.76 16 12 N -0.56 -26.49 5.29 -306.98 -1.62 -28.11 16 13 C -0.33 -17.51 9.68 84.04 0.81 -16.70 16 14 H 0.09 4.89 7.16 -2.91 -0.02 4.87 16 15 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 16 N -0.92 -47.41 13.05 21.66 0.28 -47.13 16 17 Si 1.00 40.24 29.55 68.60 2.03 42.27 16 18 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 19 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 20 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 21 N -0.71 -15.63 5.62 -460.33 -2.59 -18.22 16 22 C 0.69 18.65 8.61 179.57 1.55 20.20 16 23 O -0.63 -22.57 17.29 -3.98 -0.07 -22.64 16 24 H 0.07 1.23 7.52 -2.39 -0.02 1.22 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.09 1.25 7.72 -2.39 -0.02 1.23 16 28 H 0.14 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.42 9.80 7.44 -92.71 -0.69 9.11 16 30 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 31 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.40 18.21 7.90 -92.71 -0.73 17.47 16 33 H 0.28 13.50 8.31 -92.71 -0.77 12.73 16 34 H 0.44 9.02 8.96 -92.71 -0.83 8.19 16 Total: -1.00 -74.89 304.15 -1.72 -76.61 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: -1.08 Total: 34.22 kcal Atomic # 6 Polarization: 39.77 SS G_CDS: 6.90 Total: 46.67 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -9.41 Total: -129.10 kcal Atomic # 8 Polarization: -70.51 SS G_CDS: -0.17 Total: -70.67 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -74.89 -1.72 -76.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347786525.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.763 kcal (2) G-P(sol) polarization free energy of solvation -74.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds