Wall clock time and date at job start Mon Mar 30 2020 01:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.47395 * 125.37509 * 2 1 4 4 C 1.54098 * 103.70205 * 180.02562 * 3 2 1 5 5 H 1.09000 * 110.55489 * 241.22643 * 4 3 2 6 6 C 1.50705 * 110.54882 * 118.55583 * 4 3 2 7 7 O 1.21281 * 120.00114 * 262.00242 * 6 4 3 8 8 N 1.34778 * 119.99709 * 82.00232 * 6 4 3 9 9 C 1.46496 * 120.00070 * 180.02562 * 8 6 4 10 10 C 1.50696 * 109.47124 * 179.97438 * 9 8 6 11 11 O 1.21288 * 120.00279 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99735 * 179.97438 * 10 9 8 13 13 C 1.37105 * 119.99904 * 179.97438 * 12 10 9 14 14 H 1.07991 * 119.99780 * 0.02562 * 13 12 10 15 15 C 1.38954 * 119.99815 * 179.72596 * 13 12 10 16 16 N 1.31412 * 119.99962 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99686 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46850 * 90.00463 * 17 15 13 19 19 H 1.48504 * 109.47159 * 210.00116 * 17 15 13 20 20 H 1.48497 * 109.47216 * 330.00562 * 17 15 13 21 21 N 1.47057 * 103.99223 * 359.89240 * 4 3 2 22 22 C 1.33943 * 125.41428 * 179.91215 * 2 1 3 23 23 O 1.21590 * 123.04295 * 0.02562 * 22 2 1 24 24 H 1.09000 * 109.46509 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47065 * 300.06142 * 1 2 3 26 26 H 1.08998 * 109.47601 * 60.06411 * 1 2 3 27 27 H 1.09001 * 110.65851 * 61.48195 * 3 2 1 28 28 H 1.08998 * 110.59622 * 298.56549 * 3 2 1 29 29 H 0.97005 * 119.99770 * 359.97438 * 8 6 4 30 30 H 1.09000 * 109.46914 * 59.99690 * 9 8 6 31 31 H 1.09002 * 109.46777 * 299.99649 * 9 8 6 32 32 H 0.97005 * 120.00189 * 0.02562 * 12 10 9 33 33 H 0.97000 * 119.99308 * 179.97438 * 16 15 13 34 34 H 0.96999 * 125.41329 * 180.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3183 1.2018 0.0000 4 6 3.7503 0.6327 -0.0007 5 1 4.2877 0.9477 0.8938 6 6 4.4906 1.0646 -1.2403 7 8 4.5690 0.3161 -2.1914 8 7 5.0655 2.2825 -1.2920 9 6 5.7846 2.7026 -2.4972 10 6 6.3277 4.0942 -2.2986 11 8 6.1336 4.6775 -1.2531 12 7 7.0300 4.6901 -3.2826 13 6 7.5237 5.9564 -3.1022 14 1 7.3502 6.4761 -2.1716 15 6 8.2526 6.5686 -4.1145 16 7 8.4683 5.9341 -5.2448 17 14 8.9259 8.2936 -3.8684 18 1 10.2856 8.2145 -3.2769 19 1 8.9957 8.9893 -5.1785 20 1 8.0315 9.0483 -2.9542 21 7 3.5538 -0.8246 0.0017 22 6 2.2412 -1.0916 0.0017 23 8 1.7947 -2.2226 0.0030 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5148 0.8894 26 1 -0.3634 0.5128 -0.8905 27 1 2.1439 1.7973 0.8962 28 1 2.1425 1.7969 -0.8961 29 1 5.0024 2.8812 -0.5313 30 1 5.1028 2.6969 -3.3476 31 1 6.6082 2.0144 -2.6871 32 1 7.1855 4.2235 -4.1186 33 1 8.9768 6.3617 -5.9516 34 1 4.2621 -1.4873 0.0023 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347786526.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:29 Heat of formation + Delta-G solvation = -110.306234 kcal Electronic energy + Delta-G solvation = -20140.279216 eV Core-core repulsion = 16686.681472 eV Total energy + Delta-G solvation = -3453.597744 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.41877 -40.74386 -39.78008 -37.40451 -36.25309 -35.36932 -35.08153 -33.35768 -31.02232 -29.14913 -27.98992 -26.41798 -24.63429 -21.69076 -21.60187 -21.36436 -20.07889 -19.10413 -18.72830 -17.59077 -17.44514 -16.87724 -16.71990 -16.64741 -16.17195 -15.71264 -15.57826 -15.15541 -15.11212 -14.83310 -14.50544 -13.96521 -13.77474 -13.52755 -13.36815 -13.21411 -12.94685 -12.87544 -12.43472 -12.11572 -11.58017 -11.54516 -11.41400 -10.54790 -10.43747 -10.24869 -10.06976 -9.61161 -8.49641 -5.99524 1.28674 1.38230 1.44818 1.55577 1.58855 1.78554 1.93375 2.10479 2.31866 2.87298 3.13907 3.18116 3.26552 3.52889 3.89461 4.10909 4.22983 4.43660 4.45131 4.49687 4.56197 4.72326 4.86543 4.93361 5.20545 5.40395 5.61038 5.93476 6.00541 6.30902 6.44774 6.51362 7.05143 7.07386 7.42567 7.46833 7.95934 8.67165 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.050000 B = 0.003175 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.865190 B = 8817.747198 C = 9036.627115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.637 5.637 3 C 0.105 3.895 4 C 0.112 3.888 5 H 0.161 0.839 6 C 0.504 3.496 7 O -0.572 6.572 8 N -0.694 5.694 9 C 0.120 3.880 10 C 0.435 3.565 11 O -0.619 6.619 12 N -0.562 5.562 13 C -0.335 4.335 14 H 0.089 0.911 15 C -0.011 4.011 16 N -0.918 5.918 17 Si 0.995 3.005 18 H -0.272 1.272 19 H -0.275 1.275 20 H -0.267 1.267 21 N -0.713 5.713 22 C 0.693 3.307 23 O -0.634 6.634 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.140 0.860 28 H 0.089 0.911 29 H 0.420 0.580 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.398 0.602 33 H 0.279 0.721 34 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.637 -5.744 10.150 15.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.376 5.376 3 C -0.018 4.018 4 C 0.002 3.998 5 H 0.179 0.821 6 C 0.289 3.711 7 O -0.451 6.451 8 N -0.349 5.349 9 C -0.008 4.008 10 C 0.222 3.778 11 O -0.507 6.507 12 N -0.197 5.197 13 C -0.464 4.464 14 H 0.107 0.893 15 C -0.212 4.212 16 N -0.558 5.558 17 Si 0.819 3.181 18 H -0.197 1.197 19 H -0.200 1.200 20 H -0.192 1.192 21 N -0.373 5.373 22 C 0.393 3.607 23 O -0.516 6.516 24 H 0.087 0.913 25 H 0.110 0.890 26 H 0.093 0.907 27 H 0.158 0.842 28 H 0.107 0.893 29 H 0.260 0.740 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.232 0.768 33 H 0.088 0.912 34 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -11.017 -6.346 9.975 16.160 hybrid contribution 1.038 0.446 -0.596 1.277 sum -9.979 -5.899 9.379 14.911 Atomic orbital electron populations 1.21636 0.74044 1.03588 1.03556 1.47288 1.07415 1.05470 1.77431 1.22642 0.84415 0.88176 1.06555 1.22053 0.98248 0.82028 0.97455 0.82140 1.21272 0.79066 0.80972 0.89834 1.90745 1.61248 1.53991 1.39068 1.45617 1.53645 1.17014 1.18605 1.20779 0.97810 0.92801 0.89383 1.20383 0.83583 0.88958 0.84898 1.90476 1.64229 1.67381 1.28633 1.41872 1.46714 1.15340 1.15779 1.19750 1.32002 0.92231 1.02452 0.89283 1.26111 0.96878 1.03789 0.94401 1.69681 1.40307 1.40007 1.05805 0.84886 0.78561 0.76830 0.77859 1.19709 1.19975 1.19186 1.44868 1.06409 1.07269 1.78796 1.16123 0.82500 0.84715 0.77350 1.90907 1.76783 1.22961 1.60940 0.91263 0.88983 0.90699 0.84181 0.89318 0.74027 0.88865 0.88879 0.76819 0.91172 0.72230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.59 11.22 127.77 1.43 3.02 16 2 N -0.64 -12.40 3.36 -862.57 -2.90 -15.30 16 3 C 0.11 1.41 7.34 86.58 0.64 2.05 16 4 C 0.11 1.84 4.16 44.51 0.19 2.03 16 5 H 0.16 1.39 8.14 -2.39 -0.02 1.37 16 6 C 0.50 12.39 6.94 87.66 0.61 13.00 16 7 O -0.57 -19.23 16.58 -3.03 -0.05 -19.28 16 8 N -0.69 -17.75 5.53 -466.79 -2.58 -20.33 16 9 C 0.12 3.82 6.15 85.63 0.53 4.35 16 10 C 0.43 18.15 7.85 87.66 0.69 18.84 16 11 O -0.62 -28.70 15.24 -3.05 -0.05 -28.75 16 12 N -0.56 -26.49 5.29 -306.99 -1.62 -28.11 16 13 C -0.34 -17.57 9.68 84.04 0.81 -16.75 16 14 H 0.09 4.88 7.16 -2.92 -0.02 4.86 16 15 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 16 N -0.92 -47.45 13.05 21.66 0.28 -47.16 16 17 Si 1.00 40.23 29.55 68.60 2.03 42.25 16 18 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 19 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 20 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 21 N -0.71 -15.64 5.62 -460.34 -2.59 -18.22 16 22 C 0.69 18.66 8.61 179.57 1.55 20.20 16 23 O -0.63 -22.58 17.29 -4.00 -0.07 -22.65 16 24 H 0.07 1.23 7.52 -2.39 -0.02 1.22 16 25 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.09 1.25 7.72 -2.39 -0.02 1.23 16 29 H 0.42 9.80 7.44 -92.70 -0.69 9.11 16 30 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.40 18.21 7.90 -92.70 -0.73 17.48 16 33 H 0.28 13.55 8.31 -92.71 -0.77 12.78 16 34 H 0.44 9.03 8.96 -92.71 -0.83 8.20 16 Total: -1.00 -74.85 304.15 -1.72 -76.57 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -1.08 Total: 34.35 kcal Atomic # 6 Polarization: 39.73 SS G_CDS: 6.90 Total: 46.63 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -9.41 Total: -129.14 kcal Atomic # 8 Polarization: -70.51 SS G_CDS: -0.17 Total: -70.67 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.25 kcal Total: -74.85 -1.72 -76.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347786526.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.734 kcal (2) G-P(sol) polarization free energy of solvation -74.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds