Wall clock time and date at job start Mon Mar 30 2020 01:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00095 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99845 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99838 * 3 2 1 7 7 C 1.38801 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99941 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.80995 * 99.99933 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47163 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00101 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99720 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99750 * 180.02562 * 13 11 10 15 15 C 1.54995 * 113.20495 * 61.44993 * 14 13 11 16 16 C 1.54059 * 104.76481 * 146.47571 * 15 14 13 17 17 N 1.48243 * 106.70007 * 1.01174 * 16 15 14 18 18 C 1.48809 * 105.17479 * 332.52030 * 17 16 15 19 19 C 1.47680 * 108.91387 * 88.16924 * 17 16 15 20 20 C 1.52995 * 109.28107 * 312.91891 * 19 17 16 21 21 C 1.54017 * 113.03401 * 299.51688 * 14 13 11 22 22 H 0.97001 * 120.00200 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47176 * 299.99944 * 10 9 7 24 24 H 1.08998 * 109.47231 * 59.99799 * 10 9 7 25 25 H 0.96997 * 120.00437 * 359.97438 * 13 11 10 26 26 H 1.08992 * 110.37848 * 265.29860 * 15 14 13 27 27 H 1.08998 * 110.37858 * 27.54669 * 15 14 13 28 28 H 1.08995 * 110.01547 * 120.31901 * 16 15 14 29 29 H 1.08996 * 110.01916 * 241.65937 * 16 15 14 30 30 H 1.08997 * 110.92701 * 284.55771 * 18 17 16 31 31 H 1.09001 * 110.93273 * 160.89021 * 18 17 16 32 32 H 1.09005 * 109.50019 * 72.86235 * 19 17 16 33 33 H 1.09000 * 109.50330 * 192.98037 * 19 17 16 34 34 H 1.09004 * 109.36763 * 64.97947 * 20 19 17 35 35 H 1.09001 * 109.36663 * 184.71623 * 20 19 17 36 36 H 1.09008 * 109.63063 * 291.84113 * 21 14 13 37 37 H 1.08996 * 109.62724 * 52.42936 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1041 1.6964 -1.2125 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3430 0.0018 14 6 2.3303 -7.7150 0.0019 15 6 1.4791 -8.0485 -1.2498 16 6 1.7590 -9.5373 -1.5297 17 7 2.6915 -10.0012 -0.4747 18 6 3.4504 -8.7885 -0.0650 19 6 1.9069 -10.4652 0.6872 20 6 0.8310 -9.4287 1.0168 21 6 1.4644 -8.0342 1.2349 22 1 -0.4850 -0.8400 -0.0004 23 1 3.1243 -3.7313 -0.8894 24 1 3.1244 -3.7313 0.8905 25 1 3.8008 -6.1835 0.0015 26 1 0.4206 -7.8939 -1.0411 27 1 1.7919 -7.4362 -2.0956 28 1 0.8307 -10.1066 -1.4836 29 1 2.2185 -9.6525 -2.5114 30 1 4.1977 -8.5255 -0.8136 31 1 3.9128 -8.9301 0.9119 32 1 1.4338 -11.4181 0.4497 33 1 2.5671 -10.5899 1.5456 34 1 0.1214 -9.3692 0.1914 35 1 0.3059 -9.7285 1.9238 36 1 2.0892 -8.0458 2.1281 37 1 0.6845 -7.2800 1.3398 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001438607439.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:19 Heat of formation + Delta-G solvation = -33.077913 kcal Electronic energy + Delta-G solvation = -18891.915881 eV Core-core repulsion = 15987.960222 eV Total energy + Delta-G solvation = -2903.955659 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.114 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.28056 -38.76060 -34.34002 -32.54997 -32.26643 -31.21898 -29.59112 -28.33610 -24.88215 -24.58747 -23.00319 -21.47248 -20.12784 -19.26272 -18.36260 -17.04613 -16.52795 -16.15416 -15.33209 -14.96847 -14.57374 -14.03645 -13.86267 -13.48229 -13.39085 -13.04601 -12.96503 -12.81141 -12.42230 -12.20497 -11.99479 -11.78943 -11.64817 -11.24617 -11.08618 -10.93372 -10.83041 -10.69391 -10.18841 -9.60170 -9.48437 -9.05342 -8.98494 -8.73383 -8.25073 -6.69509 -6.64305 -4.02332 2.84772 2.94971 3.32829 3.36494 3.47154 3.56716 3.75016 4.23233 4.35376 4.54506 4.58397 4.78570 4.88499 4.93762 5.02661 5.14927 5.20384 5.21524 5.26841 5.39297 5.48437 5.55760 5.61711 5.63058 5.73199 5.77339 5.90709 5.97661 6.00063 6.11845 6.17892 6.41676 6.62025 6.65741 7.61685 7.89656 8.47828 8.49881 9.24835 10.79594 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.053047 B = 0.003777 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.705728 B = 7411.243968 C = 7556.254527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.036 3.964 3 Si 1.084 2.916 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.609 4.609 8 H 0.065 0.935 9 S -0.115 6.115 10 C -0.131 4.131 11 C 0.533 3.467 12 O -0.512 6.512 13 N -0.720 5.720 14 C 0.143 3.857 15 C -0.150 4.150 16 C 0.029 3.971 17 N -0.491 5.491 18 C 0.031 3.969 19 C 0.032 3.968 20 C -0.153 4.153 21 C -0.127 4.127 22 H 0.278 0.722 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.400 0.600 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.455 -19.750 0.356 21.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.175 4.175 3 Si 0.910 3.090 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.757 4.757 8 H 0.084 0.916 9 S 0.112 5.888 10 C -0.283 4.283 11 C 0.319 3.681 12 O -0.386 6.386 13 N -0.374 5.374 14 C 0.054 3.946 15 C -0.190 4.190 16 C -0.099 4.099 17 N -0.212 5.212 18 C -0.099 4.099 19 C -0.097 4.097 20 C -0.192 4.192 21 C -0.165 4.165 22 H 0.090 0.910 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.234 0.766 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.605 -18.941 0.150 19.753 hybrid contribution 1.661 -0.521 0.330 1.772 sum 7.266 -19.462 0.480 20.779 Atomic orbital electron populations 1.70802 1.06711 1.30949 1.43316 1.26053 0.96310 1.02131 0.92969 0.83335 0.74776 0.74204 0.76731 1.20254 1.21119 1.21118 1.23710 0.96032 0.92224 1.63704 0.91628 1.84797 1.08046 0.98777 1.97226 1.23324 1.05161 0.94573 1.05198 1.20276 0.86646 0.86108 0.75030 1.90670 1.15275 1.85401 1.47208 1.45704 1.09758 1.04327 1.77571 1.21949 0.94812 0.82032 0.95771 1.23168 1.01725 0.96405 0.97665 1.23095 0.96463 0.93975 0.96393 1.66479 1.20420 1.26627 1.07696 1.23705 0.95848 0.88436 1.01880 1.22636 0.95280 0.97915 0.93853 1.22506 0.99154 0.94909 1.02643 1.22427 1.00277 0.97342 0.96485 0.91012 0.89009 0.89024 0.76554 0.89933 0.91120 0.90733 0.90074 0.89416 0.89695 0.90217 0.90595 0.90997 0.91220 0.91969 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.49 13.67 55.49 0.76 -26.73 16 2 C 0.04 1.04 5.49 -17.43 -0.10 0.95 16 3 Si 1.08 24.88 29.92 -169.99 -5.09 19.79 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.61 -17.53 9.50 30.94 0.29 -17.24 16 8 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 9 S -0.11 -3.07 19.60 -107.50 -2.11 -5.18 16 10 C -0.13 -2.62 6.16 36.01 0.22 -2.40 16 11 C 0.53 9.63 7.45 -10.99 -0.08 9.55 16 12 O -0.51 -10.99 13.42 5.56 0.07 -10.92 16 13 N -0.72 -9.46 5.34 -45.03 -0.24 -9.70 16 14 C 0.14 1.70 1.10 -129.02 -0.14 1.56 16 15 C -0.15 -1.85 4.72 -25.12 -0.12 -1.97 16 16 C 0.03 0.29 6.20 -2.53 -0.02 0.27 16 17 N -0.49 -4.77 6.07 -228.98 -1.39 -6.16 16 18 C 0.03 0.29 6.10 -1.55 -0.01 0.28 16 19 C 0.03 0.27 5.86 -3.40 -0.02 0.25 16 20 C -0.15 -1.52 5.53 -25.84 -0.14 -1.66 16 21 C -0.13 -1.56 5.13 -25.30 -0.13 -1.69 16 22 H 0.28 8.81 7.12 -40.82 -0.29 8.52 16 23 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 24 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 25 H 0.40 4.08 8.64 -40.82 -0.35 3.73 16 26 H 0.08 1.17 6.77 -51.93 -0.35 0.82 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.07 0.68 6.93 -51.93 -0.36 0.32 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.72 7.74 -51.93 -0.40 0.32 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.60 7.87 -51.93 -0.41 0.19 16 34 H 0.07 0.76 5.37 -51.93 -0.28 0.48 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.72 8.11 -51.92 -0.42 0.30 16 37 H 0.09 1.41 6.41 -51.93 -0.33 1.07 16 LS Contribution 302.33 15.07 4.56 4.56 Total: -1.00 -33.59 302.33 -9.04 -42.62 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.36 Total: 3.81 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -0.24 Total: -12.10 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: -0.87 Total: -42.59 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.07 Total: -10.92 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.09 Total: 19.79 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -2.11 Total: -5.18 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.59 -9.04 -42.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438607439.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.546 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds