Wall clock time and date at job start Mon Mar 30 2020 01:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00095 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99845 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99838 * 3 2 1 7 7 C 1.38801 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99941 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.80995 * 99.99933 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47163 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00101 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99720 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99750 * 180.02562 * 13 11 10 15 15 C 1.54995 * 113.20495 * 61.44993 * 14 13 11 16 16 C 1.54059 * 104.76481 * 146.47571 * 15 14 13 17 17 N 1.48243 * 106.70007 * 1.01174 * 16 15 14 18 18 C 1.48809 * 105.17479 * 332.52030 * 17 16 15 19 19 C 1.47680 * 108.91387 * 88.16924 * 17 16 15 20 20 C 1.52995 * 109.28107 * 312.91891 * 19 17 16 21 21 C 1.54017 * 113.03401 * 299.51688 * 14 13 11 22 22 H 0.97001 * 120.00200 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47176 * 299.99944 * 10 9 7 24 24 H 1.08998 * 109.47231 * 59.99799 * 10 9 7 25 25 H 0.96997 * 120.00437 * 359.97438 * 13 11 10 26 26 H 1.08992 * 110.37848 * 265.29860 * 15 14 13 27 27 H 1.08998 * 110.37858 * 27.54669 * 15 14 13 28 28 H 1.08995 * 110.01547 * 120.31901 * 16 15 14 29 29 H 1.08996 * 110.01916 * 241.65937 * 16 15 14 30 30 H 1.08997 * 110.92701 * 284.55771 * 18 17 16 31 31 H 1.09001 * 110.93273 * 160.89021 * 18 17 16 32 32 H 1.09005 * 109.50019 * 72.86235 * 19 17 16 33 33 H 1.09000 * 109.50330 * 192.98037 * 19 17 16 34 34 H 1.09004 * 109.36763 * 64.97947 * 20 19 17 35 35 H 1.09001 * 109.36663 * 184.71623 * 20 19 17 36 36 H 1.09008 * 109.63063 * 291.84113 * 21 14 13 37 37 H 1.08996 * 109.62724 * 52.42936 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1041 1.6964 -1.2125 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3430 0.0018 14 6 2.3303 -7.7150 0.0019 15 6 1.4791 -8.0485 -1.2498 16 6 1.7590 -9.5373 -1.5297 17 7 2.6915 -10.0012 -0.4747 18 6 3.4504 -8.7885 -0.0650 19 6 1.9069 -10.4652 0.6872 20 6 0.8310 -9.4287 1.0168 21 6 1.4644 -8.0342 1.2349 22 1 -0.4850 -0.8400 -0.0004 23 1 3.1243 -3.7313 -0.8894 24 1 3.1244 -3.7313 0.8905 25 1 3.8008 -6.1835 0.0015 26 1 0.4206 -7.8939 -1.0411 27 1 1.7919 -7.4362 -2.0956 28 1 0.8307 -10.1066 -1.4836 29 1 2.2185 -9.6525 -2.5114 30 1 4.1977 -8.5255 -0.8136 31 1 3.9128 -8.9301 0.9119 32 1 1.4338 -11.4181 0.4497 33 1 2.5671 -10.5899 1.5456 34 1 0.1214 -9.3692 0.1914 35 1 0.3059 -9.7285 1.9238 36 1 2.0892 -8.0458 2.1281 37 1 0.6845 -7.2800 1.3398 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001438607439.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:19 Heat of formation + Delta-G solvation = -58.960707 kcal Electronic energy + Delta-G solvation = -18893.038243 eV Core-core repulsion = 15987.960222 eV Total energy + Delta-G solvation = -2905.078021 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.22884 -40.10859 -35.56111 -34.76469 -33.12421 -32.37760 -30.68721 -29.52117 -27.08884 -25.48976 -23.84014 -22.66828 -21.10352 -20.44647 -20.30976 -18.25738 -17.72876 -17.20508 -16.67258 -16.43050 -15.98076 -15.71013 -15.11678 -14.84686 -14.51505 -14.38668 -14.16375 -13.93569 -13.81437 -13.60080 -13.49950 -12.75304 -12.71185 -12.58853 -12.19893 -11.96562 -11.94508 -11.68299 -11.64228 -11.55680 -11.11122 -10.92516 -10.34793 -10.18639 -9.58520 -8.94353 -8.88796 -6.29564 1.16918 1.49808 1.51061 1.59677 1.79951 2.09666 2.33299 2.90319 3.00766 3.12192 3.49141 3.66127 3.69088 3.83107 4.01210 4.05909 4.12573 4.14433 4.23789 4.34927 4.42381 4.49811 4.57380 4.72623 4.81336 4.86885 4.94903 5.02413 5.06360 5.14205 5.24183 5.41764 5.62187 5.71637 5.88014 6.12895 6.43687 7.04380 7.16175 8.49111 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.053047 B = 0.003777 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.705728 B = 7411.243968 C = 7556.254527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.018 4.018 3 Si 1.136 2.864 4 H -0.280 1.280 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.616 4.616 8 H 0.075 0.925 9 S -0.193 6.193 10 C -0.110 4.110 11 C 0.535 3.465 12 O -0.553 6.553 13 N -0.696 5.696 14 C 0.135 3.865 15 C -0.149 4.149 16 C 0.037 3.963 17 N -0.491 5.491 18 C 0.040 3.960 19 C 0.035 3.965 20 C -0.147 4.147 21 C -0.126 4.126 22 H 0.260 0.740 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.418 0.582 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.365 -21.172 0.523 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.221 4.221 3 Si 0.954 3.046 4 H -0.205 1.205 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.763 4.763 8 H 0.093 0.907 9 S 0.033 5.967 10 C -0.261 4.261 11 C 0.321 3.679 12 O -0.430 6.430 13 N -0.350 5.350 14 C 0.047 3.953 15 C -0.189 4.189 16 C -0.091 4.091 17 N -0.211 5.211 18 C -0.089 4.089 19 C -0.093 4.093 20 C -0.186 4.186 21 C -0.165 4.165 22 H 0.071 0.929 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.256 0.744 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.567 -20.423 0.317 22.150 hybrid contribution 0.770 -0.208 0.285 0.847 sum 9.337 -20.631 0.602 22.653 Atomic orbital electron populations 1.70921 1.08036 1.29979 1.45893 1.27834 0.96285 1.06377 0.91624 0.82725 0.73955 0.69488 0.78471 1.20530 1.18771 1.18746 1.24052 0.96533 0.92879 1.62871 0.90693 1.85033 1.13083 1.01064 1.97474 1.23229 1.02205 0.93819 1.06892 1.19984 0.86440 0.86341 0.75157 1.90675 1.17095 1.85802 1.49421 1.45448 1.10146 1.03967 1.75400 1.22196 0.96198 0.81550 0.95345 1.23117 1.00127 0.98313 0.97343 1.23046 0.97123 0.91926 0.97050 1.66512 1.20376 1.26274 1.07948 1.23757 0.94908 0.86836 1.03385 1.22706 0.94934 0.97707 0.93996 1.22474 0.99484 0.93941 1.02746 1.22377 0.99339 0.97667 0.97129 0.92904 0.87214 0.87181 0.74414 0.92722 0.92544 0.89984 0.89092 0.88127 0.87885 0.88730 0.89097 0.92156 0.90274 0.90947 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.25 13.67 21.65 0.30 -57.95 16 2 C -0.02 -1.05 5.49 84.86 0.47 -0.58 16 3 Si 1.14 49.23 29.92 68.60 2.05 51.28 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 7 C -0.62 -35.60 9.50 67.95 0.65 -34.95 16 8 H 0.07 4.05 7.80 -2.91 -0.02 4.03 16 9 S -0.19 -10.64 19.60 -56.49 -1.11 -11.74 16 10 C -0.11 -4.32 6.16 71.24 0.44 -3.89 16 11 C 0.54 19.31 7.45 87.66 0.65 19.97 16 12 O -0.55 -24.70 13.42 -3.03 -0.04 -24.74 16 13 N -0.70 -17.27 5.34 -414.78 -2.21 -19.49 16 14 C 0.14 3.03 1.10 5.42 0.01 3.04 16 15 C -0.15 -3.65 4.72 31.63 0.15 -3.50 16 16 C 0.04 0.66 6.20 86.40 0.54 1.20 16 17 N -0.49 -7.95 6.07 -878.35 -5.33 -13.28 16 18 C 0.04 0.63 6.10 86.72 0.53 1.16 16 19 C 0.03 0.49 5.86 86.15 0.50 1.00 16 20 C -0.15 -2.73 5.53 31.17 0.17 -2.56 16 21 C -0.13 -3.04 5.13 31.52 0.16 -2.88 16 22 H 0.26 17.26 7.12 -92.71 -0.66 16.60 16 23 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 24 H 0.11 3.92 8.14 -2.40 -0.02 3.91 16 25 H 0.42 7.35 8.64 -92.71 -0.80 6.55 16 26 H 0.05 1.64 6.77 -2.39 -0.02 1.62 16 27 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.08 1.36 6.93 -2.39 -0.02 1.34 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.10 1.29 7.74 -2.39 -0.02 1.28 16 32 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.09 1.07 7.87 -2.39 -0.02 1.05 16 34 H 0.06 1.26 5.37 -2.38 -0.01 1.25 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 1.56 8.11 -2.38 -0.02 1.54 16 37 H 0.05 1.53 6.41 -2.39 -0.02 1.51 16 Total: -1.00 -75.76 302.33 -1.70 -77.46 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.38 Total: 20.47 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: 4.26 Total: -22.00 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -7.25 Total: -90.71 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.04 Total: -24.74 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 2.05 Total: 51.28 kcal Atomic # 16 Polarization: -10.64 SS G_CDS: -1.11 Total: -11.74 kcal Total: -75.76 -1.70 -77.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438607439.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.497 kcal (2) G-P(sol) polarization free energy of solvation -75.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds