Wall clock time and date at job start Mon Mar 30 2020 01:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99656 * 2 1 4 4 H 1.48497 * 109.47279 * 269.99645 * 3 2 1 5 5 H 1.48504 * 109.47203 * 29.99967 * 3 2 1 6 6 H 1.48505 * 109.46982 * 149.99721 * 3 2 1 7 7 C 1.37872 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99863 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00333 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47365 * 180.02562 * 9 7 2 11 11 C 1.38279 * 119.93157 * 90.00044 * 10 9 7 12 12 C 1.38111 * 120.07450 * 179.97438 * 11 10 9 13 13 C 1.38880 * 119.92656 * 0.02562 * 12 11 10 14 14 N 1.39863 * 120.07470 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00527 * 146.78569 * 14 13 12 16 16 O 1.21640 * 119.99595 * 354.73384 * 15 14 13 17 17 C 1.47233 * 120.00303 * 174.72500 * 15 14 13 18 18 C 1.46698 * 126.94382 * 180.02562 * 17 15 14 19 19 C 1.34489 * 106.32940 * 180.02562 * 18 17 15 20 20 N 1.36448 * 108.86295 * 359.97438 * 19 18 17 21 21 H 0.97004 * 124.84377 * 179.97438 * 20 19 18 22 22 C 1.34658 * 110.29880 * 0.26901 * 20 19 18 23 23 C 1.38892 * 119.85578 * 0.26806 * 13 12 11 24 24 C 1.38107 * 119.92644 * 359.47601 * 23 13 12 25 25 H 0.96994 * 120.00238 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47219 * 59.99854 * 9 7 2 27 27 H 1.09004 * 109.47290 * 300.00475 * 9 7 2 28 28 H 1.08003 * 119.96166 * 0.02562 * 11 10 9 29 29 H 1.07993 * 120.03487 * 179.97438 * 12 11 10 30 30 H 0.97003 * 119.99765 * 326.79762 * 14 13 12 31 31 H 1.07993 * 126.83094 * 0.02562 * 18 17 15 32 32 H 1.08002 * 125.56116 * 179.97438 * 19 18 17 33 33 H 1.08000 * 125.80452 * 179.73490 * 22 20 19 34 34 H 1.08006 * 120.03458 * 179.72909 * 23 13 12 35 35 H 1.08006 * 119.96299 * 180.25278 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6788 -4.1690 1.1978 12 6 3.5759 -5.2190 1.2013 13 6 4.0281 -5.7479 -0.0006 14 7 4.9370 -6.8110 -0.0007 15 6 4.8890 -7.7386 -0.9773 16 8 3.9971 -7.7060 -1.8037 17 6 5.9162 -8.7914 -1.0438 18 6 6.0111 -9.8693 -2.0343 19 6 7.0991 -10.5889 -1.7070 20 7 7.6753 -10.0384 -0.5994 21 1 8.4748 -10.3749 -0.1653 22 6 6.9717 -8.9652 -0.1913 23 6 3.5805 -5.2149 -1.2025 24 6 2.6794 -4.1683 -1.1990 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.3264 -3.7575 2.1321 29 1 3.9260 -5.6278 2.1375 30 1 5.6019 -6.8807 0.7022 31 1 5.3407 -10.0491 -2.8617 32 1 7.4580 -11.4602 -2.2347 33 1 7.2030 -8.3454 0.6624 34 1 3.9337 -5.6211 -2.1389 35 1 2.3278 -3.7561 -2.1333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001455945946.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:49 Heat of formation + Delta-G solvation = 30.671556 kcal Electronic energy + Delta-G solvation = -18815.054171 eV Core-core repulsion = 15778.418946 eV Total energy + Delta-G solvation = -3036.635226 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.39725 -39.79458 -37.86389 -34.73618 -32.98848 -31.43234 -30.45744 -30.20632 -29.29445 -26.54334 -23.88144 -22.52027 -22.20558 -20.97368 -20.23535 -19.45513 -19.02015 -17.00090 -16.36122 -16.24770 -15.21911 -14.88004 -14.40465 -14.30176 -14.17202 -13.90387 -13.63233 -13.27257 -12.86374 -12.72093 -12.52800 -12.33359 -11.94329 -11.32413 -11.22775 -10.76736 -10.55420 -10.31153 -9.95961 -9.78089 -9.37068 -9.18971 -9.10378 -8.70452 -8.37733 -8.20670 -7.27507 -5.98935 -4.02866 1.45140 2.05405 2.14344 2.30140 2.87201 3.32091 3.33688 3.39613 3.43553 3.56323 4.43415 4.57360 4.63573 4.75599 4.87677 5.20635 5.34935 5.50197 5.60927 5.68960 5.76114 6.04517 6.14896 6.21893 6.28151 6.41253 6.59022 6.72859 6.89880 7.01316 7.08435 7.24058 7.28657 7.57842 7.67822 7.79677 7.93799 7.97039 8.37619 8.39704 9.02588 9.60579 11.10641 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.044543 B = 0.003145 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.456156 B = 8901.457955 C = 9002.053193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.510 4.510 8 H 0.057 0.943 9 C 0.048 3.952 10 C -0.044 4.044 11 C -0.108 4.108 12 C -0.146 4.146 13 C 0.109 3.891 14 N -0.668 5.668 15 C 0.583 3.417 16 O -0.525 6.525 17 C -0.225 4.225 18 C -0.140 4.140 19 C -0.024 4.024 20 N -0.552 5.552 21 H 0.417 0.583 22 C 0.044 3.956 23 C -0.117 4.117 24 C -0.107 4.107 25 H 0.261 0.739 26 H 0.029 0.971 27 H 0.028 0.972 28 H 0.121 0.879 29 H 0.113 0.887 30 H 0.401 0.599 31 H 0.149 0.851 32 H 0.170 0.830 33 H 0.172 0.828 34 H 0.124 0.876 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.659 -20.284 1.455 26.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.548 4.548 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.045 4.045 11 C -0.127 4.127 12 C -0.166 4.166 13 C 0.017 3.983 14 N -0.313 5.313 15 C 0.372 3.628 16 O -0.401 6.401 17 C -0.235 4.235 18 C -0.164 4.164 19 C -0.152 4.152 20 N -0.146 5.146 21 H 0.253 0.747 22 C -0.092 4.092 23 C -0.137 4.137 24 C -0.126 4.126 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.139 0.861 29 H 0.131 0.869 30 H 0.236 0.764 31 H 0.167 0.833 32 H 0.188 0.812 33 H 0.189 0.811 34 H 0.142 0.858 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 16.006 -20.245 0.868 25.822 hybrid contribution 1.207 0.749 0.608 1.545 sum 17.213 -19.496 1.477 26.049 Atomic orbital electron populations 1.69961 1.06023 1.26744 1.50663 1.25017 0.94876 0.99223 0.95296 0.86543 0.79801 0.83233 0.78158 1.20615 1.21219 1.19840 1.21081 0.93054 0.89913 1.50745 0.92465 1.18346 0.92587 0.89590 0.98377 1.20690 0.96551 0.95358 0.91871 1.20864 0.97444 0.95882 0.98494 1.20726 1.00506 0.99891 0.95474 1.17494 0.95870 0.90571 0.94387 1.43230 1.34640 1.24732 1.28648 1.17476 0.84157 0.80169 0.80965 1.90801 1.35377 1.74156 1.39779 1.20477 0.99637 1.01647 1.01784 1.22003 0.98678 0.95157 1.00549 1.21824 0.98061 1.02545 0.92723 1.41592 1.24570 1.24012 1.24442 0.74669 1.21956 0.94267 0.92283 1.00720 1.21011 0.99417 0.96501 0.96785 1.20996 0.97431 0.95665 0.98510 0.92887 0.95300 0.95348 0.86084 0.86901 0.76448 0.83323 0.81229 0.81061 0.85820 0.86113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -14.49 9.09 -34.44 -0.31 -14.80 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 9 C 0.05 1.26 5.10 -29.04 -0.15 1.11 16 10 C -0.04 -1.00 5.07 -104.59 -0.53 -1.53 16 11 C -0.11 -2.15 9.69 -39.61 -0.38 -2.53 16 12 C -0.15 -2.47 9.96 -39.39 -0.39 -2.86 16 13 C 0.11 1.90 6.27 -83.71 -0.53 1.37 16 14 N -0.67 -9.12 5.33 -10.89 -0.06 -9.18 16 15 C 0.58 8.80 7.54 -12.61 -0.10 8.70 16 16 O -0.52 -10.12 14.67 5.24 0.08 -10.04 16 17 C -0.22 -2.59 6.29 -103.35 -0.65 -3.24 16 18 C -0.14 -1.46 10.97 -37.49 -0.41 -1.87 16 19 C -0.02 -0.17 11.89 -16.82 -0.20 -0.37 16 20 N -0.55 -2.97 5.90 -12.84 -0.08 -3.05 16 21 H 0.42 0.73 8.96 -40.82 -0.37 0.37 16 22 C 0.04 0.32 11.41 -16.84 -0.19 0.13 16 23 C -0.12 -2.29 8.65 -39.39 -0.34 -2.63 16 24 C -0.11 -2.28 9.69 -39.61 -0.38 -2.67 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 27 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 28 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 29 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.40 3.81 7.77 -40.82 -0.32 3.49 16 31 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.17 0.68 7.46 -52.49 -0.39 0.29 16 34 H 0.12 2.42 6.43 -52.48 -0.34 2.08 16 35 H 0.12 2.51 8.06 -52.48 -0.42 2.09 16 LS Contribution 310.26 15.07 4.68 4.68 Total: -1.00 -35.64 310.26 -8.24 -43.88 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -3.91 Total: 2.69 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -4.66 Total: -19.64 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.60 Total: -38.31 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.64 -8.24 -43.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455945946.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.547 kcal (2) G-P(sol) polarization free energy of solvation -35.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds