Wall clock time and date at job start Mon Mar 30 2020 01:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99656 * 2 1 4 4 H 1.48497 * 109.47279 * 269.99645 * 3 2 1 5 5 H 1.48504 * 109.47203 * 29.99967 * 3 2 1 6 6 H 1.48505 * 109.46982 * 149.99721 * 3 2 1 7 7 C 1.37872 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99863 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00333 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47365 * 180.02562 * 9 7 2 11 11 C 1.38279 * 119.93157 * 90.00044 * 10 9 7 12 12 C 1.38111 * 120.07450 * 179.97438 * 11 10 9 13 13 C 1.38880 * 119.92656 * 0.02562 * 12 11 10 14 14 N 1.39863 * 120.07470 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00527 * 146.78569 * 14 13 12 16 16 O 1.21640 * 119.99595 * 354.73384 * 15 14 13 17 17 C 1.47233 * 120.00303 * 174.72500 * 15 14 13 18 18 C 1.46698 * 126.94382 * 180.02562 * 17 15 14 19 19 C 1.34489 * 106.32940 * 180.02562 * 18 17 15 20 20 N 1.36448 * 108.86295 * 359.97438 * 19 18 17 21 21 H 0.97004 * 124.84377 * 179.97438 * 20 19 18 22 22 C 1.34658 * 110.29880 * 0.26901 * 20 19 18 23 23 C 1.38892 * 119.85578 * 0.26806 * 13 12 11 24 24 C 1.38107 * 119.92644 * 359.47601 * 23 13 12 25 25 H 0.96994 * 120.00238 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47219 * 59.99854 * 9 7 2 27 27 H 1.09004 * 109.47290 * 300.00475 * 9 7 2 28 28 H 1.08003 * 119.96166 * 0.02562 * 11 10 9 29 29 H 1.07993 * 120.03487 * 179.97438 * 12 11 10 30 30 H 0.97003 * 119.99765 * 326.79762 * 14 13 12 31 31 H 1.07993 * 126.83094 * 0.02562 * 18 17 15 32 32 H 1.08002 * 125.56116 * 179.97438 * 19 18 17 33 33 H 1.08000 * 125.80452 * 179.73490 * 22 20 19 34 34 H 1.08006 * 120.03458 * 179.72909 * 23 13 12 35 35 H 1.08006 * 119.96299 * 180.25278 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6788 -4.1690 1.1978 12 6 3.5759 -5.2190 1.2013 13 6 4.0281 -5.7479 -0.0006 14 7 4.9370 -6.8110 -0.0007 15 6 4.8890 -7.7386 -0.9773 16 8 3.9971 -7.7060 -1.8037 17 6 5.9162 -8.7914 -1.0438 18 6 6.0111 -9.8693 -2.0343 19 6 7.0991 -10.5889 -1.7070 20 7 7.6753 -10.0384 -0.5994 21 1 8.4748 -10.3749 -0.1653 22 6 6.9717 -8.9652 -0.1913 23 6 3.5805 -5.2149 -1.2025 24 6 2.6794 -4.1683 -1.1990 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.3264 -3.7575 2.1321 29 1 3.9260 -5.6278 2.1375 30 1 5.6019 -6.8807 0.7022 31 1 5.3407 -10.0491 -2.8617 32 1 7.4580 -11.4602 -2.2347 33 1 7.2030 -8.3454 0.6624 34 1 3.9337 -5.6211 -2.1389 35 1 2.3278 -3.7561 -2.1333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001455945946.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:48 Heat of formation + Delta-G solvation = 6.739674 kcal Electronic energy + Delta-G solvation = -18816.091936 eV Core-core repulsion = 15778.418946 eV Total energy + Delta-G solvation = -3037.672990 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.09705 -41.02180 -39.30576 -36.21692 -34.96283 -32.60850 -31.77976 -31.62639 -30.17120 -28.28280 -25.46237 -24.03446 -23.60644 -21.96345 -21.40379 -20.52407 -19.70128 -18.50406 -18.21180 -17.40207 -16.80590 -16.35722 -15.91412 -15.46450 -15.27124 -14.75254 -14.65835 -14.50457 -14.45351 -14.23884 -13.77325 -13.62885 -13.26516 -13.21350 -12.97757 -12.60833 -12.43318 -12.01891 -11.64739 -11.52153 -11.12395 -10.80088 -10.59012 -9.80961 -9.75114 -9.33057 -8.81069 -8.16539 -6.31665 0.36295 0.58388 0.91315 1.40883 1.42578 1.53898 1.55745 2.13626 2.40931 2.48494 2.53476 3.04962 3.12338 3.93483 4.08502 4.14202 4.16923 4.39703 4.40565 4.50109 4.65071 4.68425 4.78352 5.01708 5.11203 5.13452 5.34265 5.36422 5.45121 5.52003 5.62979 5.72812 5.77224 5.94871 6.09629 6.14282 6.27455 6.58678 6.72442 6.81072 7.29234 7.36745 8.91425 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.044543 B = 0.003145 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.456156 B = 8901.457955 C = 9002.053193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.057 3.943 10 C -0.076 4.076 11 C -0.112 4.112 12 C -0.128 4.128 13 C 0.123 3.877 14 N -0.653 5.653 15 C 0.580 3.420 16 O -0.581 6.581 17 C -0.273 4.273 18 C -0.185 4.185 19 C -0.001 4.001 20 N -0.532 5.532 21 H 0.440 0.560 22 C 0.077 3.923 23 C -0.127 4.127 24 C -0.120 4.120 25 H 0.265 0.735 26 H -0.003 1.003 27 H 0.007 0.993 28 H 0.129 0.871 29 H 0.162 0.838 30 H 0.425 0.575 31 H 0.129 0.871 32 H 0.205 0.795 33 H 0.212 0.788 34 H 0.118 0.882 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.562 -21.748 3.510 30.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.076 4.076 11 C -0.130 4.130 12 C -0.148 4.148 13 C 0.029 3.971 14 N -0.299 5.299 15 C 0.372 3.628 16 O -0.461 6.461 17 C -0.284 4.284 18 C -0.209 4.209 19 C -0.129 4.129 20 N -0.128 5.128 21 H 0.281 0.719 22 C -0.062 4.062 23 C -0.147 4.147 24 C -0.139 4.139 25 H 0.074 0.926 26 H 0.016 0.984 27 H 0.026 0.974 28 H 0.147 0.853 29 H 0.180 0.820 30 H 0.264 0.736 31 H 0.147 0.853 32 H 0.222 0.778 33 H 0.229 0.771 34 H 0.136 0.864 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 19.980 -21.753 2.960 29.684 hybrid contribution 0.081 1.016 -0.038 1.020 sum 20.061 -20.736 2.923 29.000 Atomic orbital electron populations 1.70091 1.07754 1.27947 1.51426 1.25969 0.95789 1.03232 0.94612 0.85403 0.78688 0.78242 0.78463 1.19973 1.20395 1.18667 1.21394 0.93151 0.91143 1.50791 0.92561 1.18087 0.92866 0.91226 0.95774 1.20392 0.97783 0.95744 0.93704 1.20991 0.97932 0.96619 0.97508 1.21048 0.98516 0.98072 0.97132 1.17602 0.95300 0.90545 0.93681 1.43093 1.34311 1.23223 1.29256 1.18102 0.84123 0.80578 0.79948 1.90772 1.37832 1.75652 1.41839 1.20304 1.01146 1.02185 1.04732 1.22097 1.00709 0.96852 1.01264 1.22212 0.96209 1.02197 0.92289 1.41667 1.24684 1.22910 1.23566 0.71920 1.22412 0.91976 0.91889 0.99904 1.20998 0.99561 0.96247 0.97910 1.20902 0.98506 0.96716 0.97785 0.92586 0.98421 0.97421 0.85346 0.82010 0.73568 0.85265 0.77826 0.77115 0.86403 0.87348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.57 13.29 21.45 0.28 -57.28 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.53 -30.96 9.09 25.60 0.23 -30.73 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 9 C 0.06 3.22 5.10 29.10 0.15 3.37 16 10 C -0.08 -3.56 5.07 -19.84 -0.10 -3.66 16 11 C -0.11 -4.40 9.69 22.25 0.22 -4.18 16 12 C -0.13 -3.99 9.96 22.39 0.22 -3.77 16 13 C 0.12 4.09 6.27 38.17 0.24 4.32 16 14 N -0.65 -16.27 5.33 -306.60 -1.63 -17.90 16 15 C 0.58 17.17 7.54 86.61 0.65 17.82 16 16 O -0.58 -23.26 14.67 -4.16 -0.06 -23.33 16 17 C -0.27 -5.83 6.29 -19.04 -0.12 -5.95 16 18 C -0.19 -3.75 10.97 23.62 0.26 -3.49 16 19 C 0.00 -0.01 11.89 83.12 0.99 0.98 16 20 N -0.53 -3.18 5.90 -194.54 -1.15 -4.33 16 21 H 0.44 -0.98 8.96 -92.71 -0.83 -1.81 16 22 C 0.08 0.79 11.41 83.92 0.96 1.74 16 23 C -0.13 -5.10 8.65 22.40 0.19 -4.90 16 24 C -0.12 -5.41 9.69 22.25 0.22 -5.19 16 25 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 26 H 0.00 -0.15 8.09 -2.39 -0.02 -0.17 16 27 H 0.01 0.44 8.08 -2.38 -0.02 0.42 16 28 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 29 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 30 H 0.43 6.22 7.77 -92.71 -0.72 5.50 16 31 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16 32 H 0.20 0.62 8.06 -2.91 -0.02 0.60 16 33 H 0.21 0.34 7.46 -2.91 -0.02 0.32 16 34 H 0.12 4.85 6.43 -2.91 -0.02 4.83 16 35 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -83.42 310.26 3.62 -79.81 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -0.42 Total: 8.99 kcal Atomic # 6 Polarization: -37.64 SS G_CDS: 4.57 Total: -33.07 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -2.50 Total: -79.51 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.06 Total: -23.33 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -83.42 3.62 -79.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455945946.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.546 kcal (2) G-P(sol) polarization free energy of solvation -83.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds