Wall clock time and date at job start Mon Mar 30 2020 01:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99923 * 2 1 4 4 H 1.48501 * 109.47245 * 239.99899 * 3 2 1 5 5 H 1.48504 * 109.46709 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47176 * 119.99422 * 3 2 1 7 7 C 1.37879 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21283 * 119.99990 * 359.71991 * 11 10 9 13 13 C 1.50698 * 119.99538 * 179.72653 * 11 10 9 14 14 C 1.50698 * 109.46944 * 179.97438 * 13 11 10 15 15 C 1.39380 * 119.49376 * 269.72711 * 14 13 11 16 16 C 1.36169 * 121.08845 * 179.70664 * 15 14 13 17 17 C 1.40369 * 119.51545 * 0.55917 * 16 15 14 18 18 C 1.40433 * 122.08180 * 179.72246 * 17 16 15 19 19 N 1.31243 * 119.88368 * 180.02562 * 18 17 16 20 20 C 1.32606 * 122.77725 * 0.02562 * 19 18 17 21 21 C 1.36171 * 121.87732 * 359.97438 * 20 19 18 22 22 C 1.40703 * 118.66688 * 0.02562 * 21 20 19 23 23 C 1.36223 * 119.49391 * 89.99550 * 14 13 11 24 24 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 25 25 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 26 26 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 27 27 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 28 28 H 1.09003 * 109.47112 * 299.99065 * 13 11 10 29 29 H 1.08993 * 109.47916 * 59.99687 * 13 11 10 30 30 H 1.07998 * 119.45183 * 0.02562 * 15 14 13 31 31 H 1.08002 * 120.23930 * 180.30369 * 16 15 14 32 32 H 1.08001 * 120.05879 * 0.04937 * 18 17 16 33 33 H 1.08003 * 119.06043 * 179.97438 * 20 19 18 34 34 H 1.07999 * 120.66694 * 180.02562 * 21 20 19 35 35 H 1.07999 * 120.25903 * 0.02572 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 -0.0037 12 8 0.5616 -5.1049 -0.0046 13 6 2.7334 -6.0286 -0.0087 14 6 1.9799 -7.3338 -0.0137 15 6 1.6423 -7.9358 1.1972 16 6 0.9568 -9.1119 1.2306 17 6 0.5937 -9.7352 0.0264 18 6 -0.1083 -10.9511 -0.0020 19 7 -0.4256 -11.4962 -1.1530 20 6 -0.1107 -10.9474 -2.3183 21 6 0.5688 -9.7701 -2.3986 22 6 0.9441 -9.1247 -1.2059 23 6 1.6442 -7.9098 -1.2016 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8898 26 1 0.6241 -2.5567 0.8902 27 1 3.1569 -3.4353 0.0021 28 1 3.3599 -5.9671 -0.8985 29 1 3.3601 -5.9748 0.8814 30 1 1.9246 -7.4591 2.1242 31 1 0.6980 -9.5639 2.1767 32 1 -0.3870 -11.4366 0.9216 33 1 -0.4015 -11.4485 -3.2298 34 1 0.8148 -9.3404 -3.3584 35 1 1.9161 -7.4350 -2.1328 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467579696.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:42 Heat of formation + Delta-G solvation = -19.550497 kcal Electronic energy + Delta-G solvation = -18888.955774 eV Core-core repulsion = 15850.142757 eV Total energy + Delta-G solvation = -3038.813017 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.79511 -40.53026 -38.37570 -36.12576 -34.38023 -34.03124 -33.51305 -30.76440 -29.99498 -28.33998 -25.11473 -24.71692 -23.61935 -23.10042 -21.37852 -19.04175 -18.70947 -18.05079 -17.56780 -17.47289 -16.96801 -16.25696 -16.08101 -15.82569 -15.21012 -15.04319 -14.89601 -14.58976 -14.37388 -14.02409 -13.98593 -13.55892 -13.05069 -12.87098 -12.83010 -12.64438 -12.63658 -12.23544 -11.95167 -11.51343 -11.15546 -10.85016 -10.79627 -10.47696 -9.87158 -9.82549 -8.99750 -8.29459 -6.46366 -0.56861 -0.08815 0.98667 1.43174 1.47066 1.55296 1.78239 2.01137 2.34817 2.70071 3.05468 3.15410 3.50050 3.57837 3.64441 3.89120 3.93733 4.10383 4.13899 4.25738 4.39599 4.50980 4.61183 4.71578 4.80641 4.86911 5.10833 5.13777 5.14882 5.23750 5.39429 5.48682 5.55523 5.69743 5.71169 5.84614 5.91118 6.65193 6.92064 7.00595 7.23468 7.51631 8.82499 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.043112 B = 0.003147 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.316290 B = 8894.202145 C = 9038.579902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.707 5.707 11 C 0.497 3.503 12 O -0.600 6.600 13 C -0.095 4.095 14 C -0.047 4.047 15 C -0.118 4.118 16 C -0.086 4.086 17 C -0.132 4.132 18 C 0.144 3.856 19 N -0.516 5.516 20 C 0.061 3.939 21 C -0.161 4.161 22 C -0.043 4.043 23 C -0.119 4.119 24 H 0.268 0.732 25 H -0.015 1.015 26 H -0.014 1.014 27 H 0.410 0.590 28 H 0.131 0.869 29 H 0.136 0.864 30 H 0.142 0.858 31 H 0.165 0.835 32 H 0.191 0.809 33 H 0.174 0.826 34 H 0.155 0.845 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.392 -19.113 -0.149 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.358 5.358 11 C 0.285 3.715 12 O -0.482 6.482 13 C -0.134 4.134 14 C -0.049 4.049 15 C -0.136 4.136 16 C -0.106 4.106 17 C -0.134 4.134 18 C -0.028 4.028 19 N -0.224 5.224 20 C -0.081 4.081 21 C -0.181 4.181 22 C -0.049 4.049 23 C -0.137 4.137 24 H 0.077 0.923 25 H 0.002 0.998 26 H 0.004 0.996 27 H 0.246 0.754 28 H 0.149 0.851 29 H 0.154 0.846 30 H 0.160 0.840 31 H 0.182 0.818 32 H 0.208 0.792 33 H 0.191 0.809 34 H 0.173 0.827 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.945 -19.928 -0.331 21.106 hybrid contribution 0.552 2.024 -0.157 2.104 sum 7.498 -17.904 -0.488 19.417 Atomic orbital electron populations 1.70134 1.08342 1.28622 1.50000 1.26082 0.95747 1.03978 0.93875 0.85214 0.77905 0.76583 0.79565 1.18608 1.21265 1.18531 1.21614 0.94384 0.90555 1.52865 0.89609 1.18509 0.88743 0.84476 0.93915 1.46196 1.11248 1.05449 1.72864 1.21346 0.89737 0.84795 0.75667 1.90677 1.19631 1.85541 1.52318 1.20819 0.96629 0.87647 1.08308 1.19424 0.97031 0.94607 0.93793 1.21114 0.98589 0.95834 0.98037 1.21274 0.96380 0.95124 0.97778 1.19326 1.01873 0.97958 0.94293 1.23660 0.91349 0.90522 0.97220 1.67458 1.20504 1.35303 0.99152 1.22543 0.95650 0.93544 0.96350 1.22162 1.00267 0.96995 0.98645 1.18462 0.97199 0.95184 0.94009 1.20989 0.99137 0.94748 0.98780 0.92282 0.99754 0.99614 0.75351 0.85059 0.84596 0.84002 0.81785 0.79179 0.80875 0.82735 0.84512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.17 13.29 21.45 0.28 -55.88 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.98 41.73 29.54 68.60 2.03 43.75 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 5 H -0.29 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 7 C -0.56 -29.78 9.28 25.60 0.24 -29.54 16 8 H 0.09 4.09 7.60 -2.91 -0.02 4.07 16 9 C 0.27 14.44 5.43 85.63 0.46 14.91 16 10 N -0.71 -28.49 5.55 -466.78 -2.59 -31.08 16 11 C 0.50 18.77 7.82 87.66 0.69 19.46 16 12 O -0.60 -29.26 16.03 -3.04 -0.05 -29.31 16 13 C -0.09 -2.23 5.80 29.10 0.17 -2.06 16 14 C -0.05 -1.21 4.34 -20.06 -0.09 -1.30 16 15 C -0.12 -2.76 9.58 22.06 0.21 -2.55 16 16 C -0.09 -1.82 9.81 22.31 0.22 -1.60 16 17 C -0.13 -3.19 5.74 -21.32 -0.12 -3.32 16 18 C 0.14 3.08 11.05 85.32 0.94 4.02 16 19 N -0.52 -12.41 10.30 -195.53 -2.01 -14.42 16 20 C 0.06 1.33 11.07 84.09 0.93 2.26 16 21 C -0.16 -3.61 9.88 22.39 0.22 -3.39 16 22 C -0.04 -1.13 5.75 -21.28 -0.12 -1.26 16 23 C -0.12 -3.11 9.42 22.28 0.21 -2.90 16 24 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 25 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 26 H -0.01 -0.87 8.14 -2.39 -0.02 -0.88 16 27 H 0.41 13.16 8.32 -92.71 -0.77 12.38 16 28 H 0.13 2.32 8.07 -2.39 -0.02 2.30 16 29 H 0.14 2.30 8.07 -2.39 -0.02 2.28 16 30 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 32 H 0.19 2.64 8.06 -2.91 -0.02 2.62 16 33 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 34 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 35 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -77.31 311.44 2.42 -74.89 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.34 Total: 18.71 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 4.42 Total: -6.66 kcal Atomic # 7 Polarization: -97.07 SS G_CDS: -4.32 Total: -101.38 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.05 Total: -29.31 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -77.31 2.42 -74.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467579696.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.342 kcal (2) G-P(sol) polarization free energy of solvation -77.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds