Wall clock time and date at job start Mon Mar 30 2020 01:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99958 * 2 1 4 4 H 1.48494 * 109.47062 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47147 * 300.00613 * 3 2 1 6 6 H 1.48497 * 109.46810 * 60.00184 * 3 2 1 7 7 C 1.37877 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00240 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99616 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46513 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.46684 * 179.97438 * 10 9 7 12 12 C 1.34808 * 119.84670 * 269.97435 * 11 10 9 13 13 N 1.30427 * 121.76910 * 179.97438 * 12 11 10 14 14 C 1.34416 * 121.33282 * 0.02630 * 13 12 11 15 15 C 1.48138 * 120.23692 * 180.02562 * 14 13 12 16 16 C 1.39475 * 120.13142 * 179.72164 * 15 14 13 17 17 C 1.37985 * 119.86357 * 179.69766 * 16 15 14 18 18 C 1.38345 * 120.13190 * 0.58164 * 17 16 15 19 19 C 1.38348 * 120.27409 * 359.71757 * 18 17 16 20 20 C 1.37985 * 120.13271 * 359.97438 * 19 18 17 21 21 C 1.38442 * 119.52098 * 359.75703 * 14 13 12 22 22 C 1.34952 * 119.85288 * 89.99856 * 11 10 9 23 23 O 1.22023 * 120.64733 * 359.97438 * 22 11 10 24 24 H 0.97002 * 120.00595 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47698 * 60.00521 * 9 7 2 26 26 H 1.09003 * 109.46906 * 299.99730 * 9 7 2 27 27 H 1.08994 * 109.47675 * 59.99884 * 10 9 7 28 28 H 1.08994 * 109.47329 * 299.99360 * 10 9 7 29 29 H 1.07994 * 119.11845 * 0.02562 * 12 11 10 30 30 H 1.07996 * 120.06524 * 0.02562 * 16 15 14 31 31 H 1.08001 * 119.93329 * 180.30045 * 17 16 15 32 32 H 1.08005 * 119.86592 * 179.69644 * 18 17 16 33 33 H 1.08000 * 119.93512 * 180.02562 * 19 18 17 34 34 H 1.07996 * 120.07339 * 180.02562 * 20 19 18 35 35 H 1.08001 * 120.81216 * 180.25398 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5128 -4.9307 0.0001 12 6 1.1782 -5.5117 1.1696 13 7 0.5260 -6.6403 1.2139 14 6 0.1566 -7.2787 0.0902 15 6 -0.5840 -8.5593 0.1688 16 6 -0.9713 -9.2169 -0.9986 17 6 -1.6554 -10.4126 -0.9189 18 6 -1.9679 -10.9530 0.3157 19 6 -1.5919 -10.3023 1.4772 20 6 -0.9018 -9.1093 1.4106 21 6 0.4684 -6.7281 -1.1411 22 6 1.1765 -5.5128 -1.1701 23 8 1.4761 -4.9925 -2.2324 24 1 -0.4851 0.8400 0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 0.6247 -2.5570 0.8897 27 1 2.8720 -3.6043 0.8894 28 1 2.8719 -3.6044 -0.8905 29 1 1.4569 -5.0292 2.0948 30 1 -0.7315 -8.7939 -1.9628 31 1 -1.9516 -10.9252 -1.8222 32 1 -2.5078 -11.8867 0.3730 33 1 -1.8383 -10.7294 2.4381 34 1 -0.6084 -8.6024 2.3179 35 1 0.1782 -7.2212 -2.0571 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473054836.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:55 Heat of formation + Delta-G solvation = 23.113689 kcal Electronic energy + Delta-G solvation = -19138.513892 eV Core-core repulsion = 16101.550933 eV Total energy + Delta-G solvation = -3036.962959 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.41839 -39.23272 -37.16716 -35.56025 -33.23892 -31.94423 -31.16176 -30.21534 -29.38533 -25.78181 -24.47800 -23.81953 -22.35732 -21.67714 -20.93366 -18.07072 -17.52454 -17.00037 -16.41821 -15.87267 -15.54795 -14.95855 -14.83081 -14.51500 -14.11916 -13.90025 -13.49265 -13.29800 -13.19630 -12.83893 -12.57305 -12.38653 -11.76511 -11.51912 -11.24679 -11.06282 -10.99335 -10.47289 -10.28816 -9.86352 -9.78489 -9.68697 -9.30594 -9.09885 -8.76059 -8.50053 -8.03742 -6.13926 -4.19119 0.35556 1.26525 1.43863 2.24980 2.93355 3.24967 3.33012 3.36361 3.58622 3.96172 4.07727 4.35901 4.50986 4.75463 4.81490 4.91011 4.99057 5.22405 5.24295 5.28834 5.39305 5.58803 5.64352 5.79815 5.93563 5.96894 6.11394 6.26788 6.33174 6.38745 6.45052 6.63738 6.79823 6.93775 7.40254 7.53944 7.81333 7.97792 8.14873 8.26496 8.86211 9.46222 10.97424 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.040749 B = 0.003486 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.961094 B = 8030.471759 C = 8225.232076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.014 3.986 10 C 0.087 3.913 11 N -0.510 5.510 12 C 0.388 3.612 13 N -0.552 5.552 14 C 0.212 3.788 15 C -0.051 4.051 16 C -0.093 4.093 17 C -0.127 4.127 18 C -0.109 4.109 19 C -0.130 4.130 20 C -0.074 4.074 21 C -0.289 4.289 22 C 0.516 3.484 23 O -0.535 6.535 24 H 0.263 0.737 25 H 0.026 0.974 26 H 0.022 0.978 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.205 0.795 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.138 0.862 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.693 -19.936 4.056 20.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.079 0.921 9 C -0.024 4.024 10 C -0.033 4.033 11 N -0.224 5.224 12 C 0.103 3.897 13 N -0.275 5.275 14 C 0.092 3.908 15 C -0.052 4.052 16 C -0.112 4.112 17 C -0.145 4.145 18 C -0.127 4.127 19 C -0.148 4.148 20 C -0.092 4.092 21 C -0.314 4.314 22 C 0.315 3.685 23 O -0.413 6.413 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.221 0.779 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.156 0.844 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.873 -19.880 3.967 20.358 hybrid contribution 0.468 1.335 -0.739 1.596 sum -1.405 -18.545 3.228 18.876 Atomic orbital electron populations 1.69974 1.06173 1.26937 1.49723 1.25008 0.94882 0.99506 0.94796 0.86433 0.80025 0.83249 0.77698 1.19566 1.20867 1.20873 1.21004 0.93129 0.90150 1.52147 0.92083 1.19429 0.94005 0.90607 0.98354 1.22620 0.96496 0.80362 1.03861 1.47165 1.44909 1.22723 1.07574 1.24873 0.86338 0.87738 0.90718 1.68331 1.19946 1.09647 1.29615 1.19885 0.90417 0.91932 0.88526 1.18503 0.99673 0.92993 0.94037 1.21341 0.97025 0.94925 0.97925 1.21063 0.99531 0.95950 0.97963 1.21298 0.99066 0.99710 0.92648 1.21164 0.99374 0.95720 0.98568 1.21412 0.95466 0.94663 0.97676 1.23077 1.09931 0.98952 0.99479 1.17031 0.81746 0.86087 0.83593 1.90966 1.56167 1.65842 1.28297 0.92747 0.95517 0.96004 0.89574 0.88873 0.77892 0.85287 0.85660 0.85993 0.85701 0.84407 0.83187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.53 -14.22 9.11 -34.44 -0.31 -14.53 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.01 0.34 5.30 -27.88 -0.15 0.19 16 10 C 0.09 1.68 5.30 -4.04 -0.02 1.66 16 11 N -0.51 -9.08 2.57 -121.28 -0.31 -9.39 16 12 C 0.39 5.60 11.45 -90.65 -1.04 4.56 16 13 N -0.55 -8.10 9.53 -10.80 -0.10 -8.21 16 14 C 0.21 3.19 6.75 -82.60 -0.56 2.64 16 15 C -0.05 -0.66 5.88 -104.91 -0.62 -1.28 16 16 C -0.09 -1.04 9.43 -39.21 -0.37 -1.41 16 17 C -0.13 -1.17 10.03 -39.63 -0.40 -1.57 16 18 C -0.11 -0.94 10.04 -39.50 -0.40 -1.33 16 19 C -0.13 -1.21 10.03 -39.63 -0.40 -1.60 16 20 C -0.07 -0.84 9.59 -39.21 -0.38 -1.21 16 21 C -0.29 -4.78 9.47 -38.59 -0.37 -5.15 16 22 C 0.52 10.23 7.43 -15.26 -0.11 10.11 16 23 O -0.53 -12.64 16.76 4.90 0.08 -12.56 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 1.38 8.00 -51.93 -0.42 0.96 16 28 H 0.09 1.94 7.44 -51.93 -0.39 1.55 16 29 H 0.20 2.13 8.01 -52.49 -0.42 1.70 16 30 H 0.13 1.31 6.24 -52.49 -0.33 0.98 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 33 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.14 1.52 7.56 -52.49 -0.40 1.12 16 35 H 0.15 2.19 6.26 -52.49 -0.33 1.87 16 LS Contribution 308.28 15.07 4.65 4.65 Total: -1.00 -33.39 308.28 -9.11 -42.50 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -3.93 Total: -0.19 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -5.21 Total: -7.33 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.32 Total: -43.14 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.08 Total: -12.56 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.39 -9.11 -42.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473054836.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.612 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds