Wall clock time and date at job start Mon Mar 30 2020 01:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86795 * 119.99871 * 2 1 4 4 H 1.48500 * 109.46844 * 239.99308 * 3 2 1 5 5 H 1.48495 * 109.47258 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47207 * 120.00136 * 3 2 1 7 7 C 1.39866 * 119.99683 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99641 * 197.95267 * 7 2 1 9 9 C 1.41137 * 120.00399 * 17.95449 * 7 2 1 10 10 C 1.40876 * 120.15752 * 204.59956 * 9 7 2 11 11 C 1.36343 * 119.83777 * 180.02562 * 10 9 7 12 12 C 1.39564 * 120.16241 * 0.02562 * 11 10 9 13 13 N 1.38856 * 119.84675 * 179.97438 * 12 11 10 14 14 C 1.46494 * 119.99995 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46960 * 180.02562 * 14 13 12 16 16 C 1.38825 * 120.35473 * 90.00487 * 15 14 13 17 17 C 1.38374 * 118.48866 * 180.02562 * 16 15 14 18 18 C 1.38929 * 119.10964 * 359.97438 * 17 16 15 19 19 O 1.35675 * 119.68491 * 180.02562 * 18 17 16 20 20 N 1.32249 * 120.62644 * 0.02562 * 18 17 16 21 21 C 1.31959 * 121.64895 * 0.02562 * 20 18 17 22 22 C 1.39575 * 120.31091 * 0.25538 * 12 11 10 23 23 C 1.36336 * 120.15992 * 359.48135 * 22 12 11 24 24 H 0.97000 * 120.00364 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.08454 * 0.02562 * 10 9 7 26 26 H 1.08002 * 119.92077 * 179.97438 * 11 10 9 27 27 H 0.96996 * 119.99421 * 0.02562 * 13 12 11 28 28 H 1.09008 * 109.47393 * 60.00980 * 14 13 12 29 29 H 1.08996 * 109.47696 * 300.00290 * 14 13 12 30 30 H 1.08006 * 120.75959 * 359.97438 * 16 15 14 31 31 H 1.08004 * 120.44772 * 180.02562 * 17 16 15 32 32 H 0.96705 * 113.99765 * 269.98245 * 19 18 17 33 33 H 1.08007 * 119.58162 * 179.97438 * 21 20 18 34 34 H 1.08005 * 119.91598 * 179.72274 * 22 12 11 35 35 H 1.08004 * 120.07992 * 180.23505 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6963 -1.2124 5 1 1.2780 2.7464 -0.0006 6 1 3.0968 1.6964 1.2125 7 6 2.0083 -1.2113 0.0005 8 1 3.0489 -1.2339 0.2889 9 6 1.3542 -2.4040 -0.3757 10 6 1.8266 -3.6472 0.0890 11 6 1.1900 -4.7954 -0.2789 12 6 0.0733 -4.7412 -1.1143 13 7 -0.5697 -5.9147 -1.4853 14 6 -1.7425 -5.8617 -2.3616 15 6 -2.2480 -7.2597 -2.6093 16 6 -3.1959 -7.8227 -1.7657 17 6 -3.6326 -9.1091 -2.0287 18 6 -3.1111 -9.7896 -3.1220 19 8 -3.5314 -11.0512 -3.3911 20 7 -2.2090 -9.2192 -3.9029 21 6 -1.7727 -7.9945 -3.6769 22 6 -0.3968 -3.5135 -1.5832 23 6 0.2266 -2.3570 -1.2191 24 1 -0.4851 0.8400 -0.0004 25 1 2.6909 -3.6907 0.7352 26 1 1.5513 -5.7492 0.0762 27 1 -0.2427 -6.7694 -1.1637 28 1 -1.4667 -5.4014 -3.3104 29 1 -2.5255 -5.2717 -1.8854 30 1 -3.5831 -7.2696 -0.9227 31 1 -4.3695 -9.5777 -1.3932 32 1 -3.0077 -11.7405 -2.9601 33 1 -1.0348 -7.5612 -4.3360 34 1 -1.2588 -3.4794 -2.2330 35 1 -0.1405 -1.4075 -1.5797 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473945413.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:22 Heat of formation + Delta-G solvation = -2.824695 kcal Electronic energy + Delta-G solvation = -18764.633945 eV Core-core repulsion = 15726.546213 eV Total energy + Delta-G solvation = -3038.087732 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.51875 -39.73726 -38.29582 -36.68155 -34.96059 -33.51234 -32.10853 -31.31957 -30.09813 -27.24522 -25.58923 -24.73712 -23.51809 -22.60337 -21.63579 -19.81974 -19.12902 -18.05409 -17.93217 -16.99577 -16.80894 -16.66593 -15.79511 -15.55391 -15.09440 -14.73661 -14.58116 -14.36675 -14.17071 -14.00366 -13.80480 -13.49200 -13.15149 -12.79810 -12.72435 -12.57661 -12.51796 -12.24362 -11.57674 -11.18722 -11.06090 -10.91422 -10.48205 -10.27820 -9.89750 -9.37676 -8.53488 -8.15515 -5.99005 -0.11299 0.19685 1.13528 1.21439 1.41461 1.51897 1.61503 2.28626 2.41831 2.75372 2.86323 3.12084 3.63793 3.75206 3.86272 3.93012 3.99298 4.32232 4.47739 4.52907 4.61262 4.76956 4.78438 4.95423 5.06617 5.16179 5.26091 5.29494 5.47884 5.52283 5.70488 5.81940 5.98522 6.21097 6.41319 6.59844 6.67943 6.87745 6.88486 7.10555 7.14713 7.31286 8.49538 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.055230 B = 0.003038 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.851841 B = 9214.805407 C = 9380.732514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.033 3.967 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.507 4.507 8 H 0.067 0.933 9 C 0.035 3.965 10 C -0.197 4.197 11 C -0.164 4.164 12 C 0.113 3.887 13 N -0.746 5.746 14 C 0.184 3.816 15 C -0.158 4.158 16 C -0.041 4.041 17 C -0.181 4.181 18 C 0.300 3.700 19 O -0.493 6.493 20 N -0.533 5.533 21 C 0.135 3.865 22 C -0.172 4.172 23 C -0.144 4.144 24 H 0.282 0.718 25 H 0.095 0.905 26 H 0.116 0.884 27 H 0.395 0.605 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.157 0.843 31 H 0.166 0.834 32 H 0.420 0.580 33 H 0.169 0.831 34 H 0.109 0.891 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.942 -14.951 -3.321 16.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.179 4.179 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.187 1.187 7 C -0.538 4.538 8 H 0.085 0.915 9 C 0.033 3.967 10 C -0.217 4.217 11 C -0.186 4.186 12 C 0.014 3.986 13 N -0.382 5.382 14 C 0.059 3.941 15 C -0.160 4.160 16 C -0.067 4.067 17 C -0.202 4.202 18 C 0.121 3.879 19 O -0.304 6.304 20 N -0.252 5.252 21 C -0.022 4.022 22 C -0.194 4.194 23 C -0.164 4.164 24 H 0.092 0.908 25 H 0.113 0.887 26 H 0.134 0.866 27 H 0.229 0.771 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.175 0.825 31 H 0.184 0.816 32 H 0.281 0.719 33 H 0.186 0.814 34 H 0.127 0.873 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.428 -14.983 -4.448 17.305 hybrid contribution 0.514 0.764 1.102 1.436 sum -6.913 -14.219 -3.346 16.161 Atomic orbital electron populations 1.69905 1.08665 1.29827 1.38455 1.26582 0.95462 1.03996 0.91904 0.85372 0.78794 0.76447 0.79746 1.18843 1.19484 1.18716 1.19572 0.98009 0.92832 1.43412 0.91514 1.17816 0.93624 0.92975 0.92322 1.20743 1.03078 0.92906 1.04957 1.20089 0.97854 0.97536 1.03129 1.17395 0.94881 0.86449 0.99886 1.43866 1.32592 1.04954 1.56739 1.19871 0.88026 0.91678 0.94521 1.20875 0.99675 0.97492 0.97961 1.21755 0.93123 0.94051 0.97800 1.22331 1.03541 0.96279 0.98029 1.19501 0.90987 0.87625 0.89807 1.84727 1.56761 1.13031 1.75857 1.67213 1.13461 1.13521 1.31011 1.22642 0.96384 0.87943 0.95239 1.20263 1.02217 0.91678 1.05245 1.20874 0.98909 0.96839 0.99826 0.90757 0.88685 0.86590 0.77073 0.91941 0.92108 0.82497 0.81599 0.71851 0.81410 0.87273 0.88320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.45 10.97 21.82 0.24 -45.21 16 2 C 0.03 1.71 5.13 85.23 0.44 2.14 16 3 Si 0.97 39.87 29.60 68.60 2.03 41.90 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 5 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 7 C -0.51 -28.32 9.03 23.38 0.21 -28.10 16 8 H 0.07 3.62 7.91 -2.91 -0.02 3.60 16 9 C 0.04 1.95 5.57 -21.27 -0.12 1.83 16 10 C -0.20 -9.68 9.74 22.47 0.22 -9.46 16 11 C -0.16 -6.95 9.82 22.15 0.22 -6.73 16 12 C 0.11 4.54 6.67 38.67 0.26 4.80 16 13 N -0.75 -22.37 5.69 -342.70 -1.95 -24.32 16 14 C 0.18 4.58 5.04 85.64 0.43 5.01 16 15 C -0.16 -3.28 5.27 -19.77 -0.10 -3.39 16 16 C -0.04 -0.73 9.85 22.44 0.22 -0.51 16 17 C -0.18 -2.97 10.04 22.47 0.23 -2.74 16 18 C 0.30 6.08 7.75 84.80 0.66 6.73 16 19 O -0.49 -8.33 13.56 -89.92 -1.22 -9.55 16 20 N -0.53 -12.77 10.39 -308.95 -3.21 -15.98 16 21 C 0.13 2.95 10.85 84.63 0.92 3.87 16 22 C -0.17 -7.70 9.23 22.15 0.20 -7.49 16 23 C -0.14 -7.62 8.64 22.47 0.19 -7.43 16 24 H 0.28 13.92 8.30 -92.71 -0.77 13.15 16 25 H 0.09 4.46 8.06 -2.91 -0.02 4.43 16 26 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 27 H 0.40 10.52 8.46 -92.71 -0.78 9.73 16 28 H 0.06 1.58 7.87 -2.38 -0.02 1.56 16 29 H 0.06 1.55 7.89 -2.39 -0.02 1.53 16 30 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.42 2.76 9.06 -74.05 -0.67 2.09 16 33 H 0.17 3.29 8.06 -2.91 -0.02 3.26 16 34 H 0.11 4.32 6.68 -2.91 -0.02 4.30 16 35 H 0.10 5.51 6.16 -2.91 -0.02 5.49 16 Total: -1.00 -66.19 306.76 -0.46 -66.65 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: -0.32 Total: 27.99 kcal Atomic # 6 Polarization: -45.45 SS G_CDS: 3.97 Total: -41.47 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -4.92 Total: -85.51 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -1.22 Total: -9.55 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -66.19 -0.46 -66.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473945413.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.823 kcal (2) G-P(sol) polarization free energy of solvation -66.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds