Wall clock time and date at job start Mon Mar 30 2020 01:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99485 * 2 1 4 4 H 1.48494 * 109.47177 * 269.99875 * 3 2 1 5 5 H 1.48505 * 109.47036 * 30.00159 * 3 2 1 6 6 H 1.48499 * 109.46776 * 149.99648 * 3 2 1 7 7 C 1.38941 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00369 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.47480 * 111.00171 * 265.96874 * 13 12 10 15 15 C 1.53513 * 87.93170 * 221.29782 * 14 13 12 16 16 N 1.46500 * 114.34228 * 139.68259 * 15 14 13 17 17 C 1.34783 * 120.00149 * 111.07310 * 16 15 14 18 18 O 1.21349 * 119.99329 * 0.02562 * 17 16 15 19 19 C 1.49448 * 120.00161 * 180.02562 * 17 16 15 20 20 N 1.34778 * 119.99813 * 180.02562 * 19 17 16 21 21 O 1.21346 * 119.99727 * 0.02562 * 19 17 16 22 22 C 1.47482 * 110.99764 * 169.99672 * 13 12 10 23 23 H 0.96993 * 120.00255 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 25 25 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 26 26 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 27 27 H 1.08999 * 113.47664 * 336.06792 * 14 13 12 28 28 H 1.08994 * 113.47488 * 106.52987 * 14 13 12 29 29 H 1.08999 * 114.16922 * 272.37539 * 15 14 13 30 30 H 0.96996 * 120.00166 * 291.08249 * 16 15 14 31 31 H 0.96999 * 119.99853 * 359.97438 * 20 19 17 32 32 H 0.97001 * 120.00049 * 180.02562 * 20 19 17 33 33 H 1.08994 * 113.48196 * 253.46980 * 22 13 12 34 34 H 1.09003 * 113.47819 * 23.94188 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4453 2.6527 0.7001 6 1 3.5455 1.4403 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 1.4691 -2.1386 0.0005 9 7 3.3799 -1.2031 0.0011 10 6 4.0539 -2.3703 0.0011 11 8 3.4475 -3.4208 0.0011 12 6 5.5609 -2.3701 0.0022 13 7 6.0507 -3.7551 0.0026 14 6 6.3171 -4.2212 1.3762 15 6 7.5910 -4.8911 0.8424 16 7 8.7528 -4.7702 1.7266 17 6 9.2383 -5.8598 2.3542 18 8 8.7133 -6.9409 2.1863 19 6 10.4231 -5.7364 3.2567 20 7 10.9089 -6.8260 3.8837 21 8 10.9477 -4.6552 3.4248 22 6 7.5054 -3.8013 -0.2354 23 1 -0.4850 0.8400 -0.0004 24 1 3.8649 -0.3630 0.0007 25 1 5.9249 -1.8559 -0.8873 26 1 5.9236 -1.8566 0.8927 27 1 6.5140 -3.4115 2.0790 28 1 5.5759 -4.9298 1.7457 29 1 7.4393 -5.9031 0.4670 30 1 9.1725 -3.9061 1.8606 31 1 10.4893 -7.6902 3.7495 32 1 11.6777 -6.7459 4.4698 33 1 7.7715 -4.1542 -1.2317 34 1 8.0195 -2.8796 0.0372 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481579478.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:45 Heat of formation + Delta-G solvation = -54.638104 kcal Electronic energy + Delta-G solvation = -19908.577757 eV Core-core repulsion = 16457.393964 eV Total energy + Delta-G solvation = -3451.183793 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.14297 -40.11501 -38.55977 -37.88923 -34.87767 -33.96907 -33.70089 -31.68247 -30.16112 -26.46457 -26.06445 -24.92393 -23.15812 -20.87550 -20.44572 -19.40056 -18.90111 -18.41961 -17.54780 -16.67287 -16.25363 -16.14163 -16.03108 -15.36175 -14.92758 -14.80930 -14.47358 -14.03681 -13.54052 -13.40062 -12.96019 -12.77656 -12.50334 -12.22166 -12.08122 -11.75000 -11.40234 -11.20654 -10.81626 -10.60169 -10.34012 -10.09556 -9.97253 -9.56255 -9.45592 -9.00531 -8.37153 -8.17349 -6.30349 -3.81897 1.03246 2.09884 2.83009 3.01600 3.06317 3.14624 3.42120 3.73167 3.92914 4.10211 4.19139 4.21019 4.62809 4.70060 5.03673 5.17197 5.20452 5.41596 5.45822 5.52880 5.65390 5.85449 5.92005 5.98625 6.07858 6.32103 6.48688 6.89380 6.96342 7.40844 7.58374 7.62624 8.14718 8.60905 8.96141 9.42883 9.84295 10.82916 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.038822 B = 0.003212 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.064531 B = 8715.137935 C = 8996.471426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.593 5.593 10 C 0.455 3.545 11 O -0.555 6.555 12 C 0.007 3.993 13 N -0.433 5.433 14 C -0.009 4.009 15 C 0.114 3.886 16 N -0.687 5.687 17 C 0.508 3.492 18 O -0.515 6.515 19 C 0.515 3.485 20 N -0.822 5.822 21 O -0.523 6.523 22 C -0.013 4.013 23 H 0.273 0.727 24 H 0.370 0.630 25 H 0.092 0.908 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.135 0.865 30 H 0.413 0.587 31 H 0.415 0.585 32 H 0.411 0.589 33 H 0.098 0.902 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.392 -7.218 5.148 25.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.234 5.234 10 C 0.240 3.760 11 O -0.435 6.435 12 C -0.125 4.125 13 N -0.155 5.155 14 C -0.139 4.139 15 C 0.009 3.991 16 N -0.340 5.340 17 C 0.288 3.712 18 O -0.390 6.390 19 C 0.293 3.707 20 N -0.388 5.388 21 O -0.398 6.398 22 C -0.143 4.143 23 H 0.084 0.916 24 H 0.202 0.798 25 H 0.110 0.890 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.117 0.883 29 H 0.153 0.847 30 H 0.249 0.751 31 H 0.246 0.754 32 H 0.243 0.757 33 H 0.116 0.884 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 22.088 -8.158 4.557 23.983 hybrid contribution 1.355 2.126 0.805 2.647 sum 23.443 -6.033 5.362 24.794 Atomic orbital electron populations 1.69619 1.05630 1.27465 1.49520 1.25033 0.95490 0.97945 0.97737 0.86667 0.79712 0.84084 0.78864 1.19617 1.20203 1.19594 1.19426 0.79204 0.96636 1.47999 0.86288 1.42212 1.07534 1.06061 1.67545 1.19520 0.87775 0.84611 0.84117 1.90578 1.69190 1.30878 1.52903 1.22555 0.96863 0.90781 1.02312 1.68817 1.11128 1.18961 1.16565 1.24438 0.96726 1.00243 0.92472 1.22899 0.83963 1.01785 0.90476 1.45778 1.31507 1.11159 1.45527 1.20074 0.84533 0.85068 0.81571 1.90799 1.59456 1.26609 1.62103 1.20168 0.84592 0.84752 0.81180 1.43535 1.35154 1.11460 1.48691 1.90826 1.59667 1.26709 1.62597 1.24341 0.91509 0.97862 1.00547 0.91626 0.79790 0.88961 0.91980 0.90858 0.88339 0.84686 0.75054 0.75439 0.75663 0.88414 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.90 13.96 55.50 0.77 -25.12 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 19.33 27.74 -169.99 -4.71 14.62 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 7 C -0.30 -8.65 10.16 -14.94 -0.15 -8.80 16 8 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 9 N -0.59 -14.14 5.09 -10.96 -0.06 -14.20 16 10 C 0.45 10.36 7.85 -10.98 -0.09 10.28 16 11 O -0.55 -15.19 16.01 5.55 0.09 -15.10 16 12 C 0.01 0.12 5.30 -4.97 -0.03 0.09 16 13 N -0.43 -6.57 5.82 -246.09 -1.43 -8.00 16 14 C -0.01 -0.12 7.53 -7.54 -0.06 -0.17 16 15 C 0.11 1.23 4.59 -67.72 -0.31 0.92 16 16 N -0.69 -6.37 5.39 -53.97 -0.29 -6.66 16 17 C 0.51 5.15 7.89 -11.58 -0.09 5.06 16 18 O -0.51 -6.37 16.07 5.50 0.09 -6.28 16 19 C 0.51 4.58 8.16 -11.59 -0.09 4.49 16 20 N -0.82 -4.41 8.87 30.90 0.27 -4.14 16 21 O -0.52 -5.91 17.31 5.50 0.10 -5.81 16 22 C -0.01 -0.13 7.45 -7.54 -0.06 -0.19 16 23 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 25 H 0.09 1.27 8.08 -51.93 -0.42 0.85 16 26 H 0.06 0.85 7.30 -51.93 -0.38 0.47 16 27 H 0.07 0.89 7.42 -51.93 -0.39 0.50 16 28 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 29 H 0.14 1.60 7.45 -51.93 -0.39 1.22 16 30 H 0.41 3.23 8.23 -40.82 -0.34 2.90 16 31 H 0.42 1.74 8.30 -40.82 -0.34 1.40 16 32 H 0.41 1.37 8.93 -40.82 -0.36 1.01 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.62 7.90 -51.93 -0.41 0.20 16 LS Contribution 302.75 15.07 4.56 4.56 Total: -1.00 -36.23 302.75 -5.24 -41.47 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -3.66 Total: 11.97 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: -0.97 Total: 12.70 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.73 Total: -58.12 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: 0.27 Total: -27.20 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.71 Total: 14.62 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -36.23 -5.24 -41.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481579478.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.169 kcal (2) G-P(sol) polarization free energy of solvation -36.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds