Wall clock time and date at job start Mon Mar 30 2020 01:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99485 * 2 1 4 4 H 1.48494 * 109.47177 * 269.99875 * 3 2 1 5 5 H 1.48505 * 109.47036 * 30.00159 * 3 2 1 6 6 H 1.48499 * 109.46776 * 149.99648 * 3 2 1 7 7 C 1.38941 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00369 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.47480 * 111.00171 * 265.96874 * 13 12 10 15 15 C 1.53513 * 87.93170 * 221.29782 * 14 13 12 16 16 N 1.46500 * 114.34228 * 139.68259 * 15 14 13 17 17 C 1.34783 * 120.00149 * 111.07310 * 16 15 14 18 18 O 1.21349 * 119.99329 * 0.02562 * 17 16 15 19 19 C 1.49448 * 120.00161 * 180.02562 * 17 16 15 20 20 N 1.34778 * 119.99813 * 180.02562 * 19 17 16 21 21 O 1.21346 * 119.99727 * 0.02562 * 19 17 16 22 22 C 1.47482 * 110.99764 * 169.99672 * 13 12 10 23 23 H 0.96993 * 120.00255 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 25 25 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 26 26 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 27 27 H 1.08999 * 113.47664 * 336.06792 * 14 13 12 28 28 H 1.08994 * 113.47488 * 106.52987 * 14 13 12 29 29 H 1.08999 * 114.16922 * 272.37539 * 15 14 13 30 30 H 0.96996 * 120.00166 * 291.08249 * 16 15 14 31 31 H 0.96999 * 119.99853 * 359.97438 * 20 19 17 32 32 H 0.97001 * 120.00049 * 180.02562 * 20 19 17 33 33 H 1.08994 * 113.48196 * 253.46980 * 22 13 12 34 34 H 1.09003 * 113.47819 * 23.94188 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4453 2.6527 0.7001 6 1 3.5455 1.4403 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 1.4691 -2.1386 0.0005 9 7 3.3799 -1.2031 0.0011 10 6 4.0539 -2.3703 0.0011 11 8 3.4475 -3.4208 0.0011 12 6 5.5609 -2.3701 0.0022 13 7 6.0507 -3.7551 0.0026 14 6 6.3171 -4.2212 1.3762 15 6 7.5910 -4.8911 0.8424 16 7 8.7528 -4.7702 1.7266 17 6 9.2383 -5.8598 2.3542 18 8 8.7133 -6.9409 2.1863 19 6 10.4231 -5.7364 3.2567 20 7 10.9089 -6.8260 3.8837 21 8 10.9477 -4.6552 3.4248 22 6 7.5054 -3.8013 -0.2354 23 1 -0.4850 0.8400 -0.0004 24 1 3.8649 -0.3630 0.0007 25 1 5.9249 -1.8559 -0.8873 26 1 5.9236 -1.8566 0.8927 27 1 6.5140 -3.4115 2.0790 28 1 5.5759 -4.9298 1.7457 29 1 7.4393 -5.9031 0.4670 30 1 9.1725 -3.9061 1.8606 31 1 10.4893 -7.6902 3.7495 32 1 11.6777 -6.7459 4.4698 33 1 7.7715 -4.1542 -1.2317 34 1 8.0195 -2.8796 0.0372 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481579478.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:44 Heat of formation + Delta-G solvation = -91.341696 kcal Electronic energy + Delta-G solvation = -19910.169344 eV Core-core repulsion = 16457.393964 eV Total energy + Delta-G solvation = -3452.775380 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.01270 -41.07887 -39.84427 -39.18731 -36.02951 -35.59233 -34.45149 -33.75217 -31.38586 -27.77270 -26.99553 -26.31583 -24.43174 -21.67900 -21.38137 -21.19585 -20.27235 -19.59874 -18.36237 -17.80423 -17.42887 -17.08701 -16.93369 -16.66312 -16.52310 -15.98588 -15.46037 -15.11383 -15.09430 -14.70305 -14.53293 -14.08627 -13.86079 -13.70839 -13.08537 -12.90530 -12.78762 -12.42511 -12.40656 -11.96737 -11.88323 -11.50115 -10.90945 -10.89794 -10.47639 -10.30141 -10.24101 -9.81943 -8.40850 -6.02165 0.28866 1.30145 1.36651 1.37063 1.45360 1.97286 2.08471 2.23757 2.58723 2.89151 3.14032 3.21506 3.41079 3.56225 3.72215 4.05199 4.16585 4.24609 4.35112 4.45572 4.66159 4.78541 4.83455 5.17041 5.29480 5.51835 5.53809 5.87147 5.90302 5.98996 6.25938 6.60401 6.75825 6.89247 6.99624 7.40619 7.99331 8.77152 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.038822 B = 0.003212 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.064531 B = 8715.137935 C = 8996.471426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.017 4.017 3 Si 0.968 3.032 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.229 1.229 7 C -0.329 4.329 8 H 0.052 0.948 9 N -0.593 5.593 10 C 0.450 3.550 11 O -0.612 6.612 12 C 0.021 3.979 13 N -0.475 5.475 14 C -0.014 4.014 15 C 0.127 3.873 16 N -0.675 5.675 17 C 0.506 3.494 18 O -0.542 6.542 19 C 0.519 3.481 20 N -0.801 5.801 21 O -0.548 6.548 22 C 0.004 3.996 23 H 0.279 0.721 24 H 0.390 0.610 25 H 0.127 0.873 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.121 0.879 30 H 0.423 0.577 31 H 0.423 0.577 32 H 0.424 0.576 33 H 0.110 0.890 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.294 -5.062 5.339 28.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.216 4.216 3 Si 0.788 3.212 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.152 1.152 7 C -0.458 4.458 8 H 0.070 0.930 9 N -0.235 5.235 10 C 0.238 3.762 11 O -0.496 6.496 12 C -0.111 4.111 13 N -0.198 5.198 14 C -0.144 4.144 15 C 0.021 3.979 16 N -0.328 5.328 17 C 0.287 3.713 18 O -0.418 6.418 19 C 0.297 3.703 20 N -0.368 5.368 21 O -0.426 6.426 22 C -0.125 4.125 23 H 0.088 0.912 24 H 0.226 0.774 25 H 0.145 0.855 26 H 0.116 0.884 27 H 0.109 0.891 28 H 0.083 0.917 29 H 0.138 0.862 30 H 0.262 0.738 31 H 0.255 0.745 32 H 0.258 0.742 33 H 0.128 0.872 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 26.049 -6.026 4.765 27.158 hybrid contribution 0.079 1.259 0.767 1.476 sum 26.128 -4.767 5.532 27.129 Atomic orbital electron populations 1.69812 1.08247 1.29268 1.50438 1.26160 0.96495 1.02855 0.96057 0.85327 0.79496 0.76439 0.79987 1.18058 1.20147 1.15197 1.18990 0.81626 0.94832 1.50383 0.93022 1.42034 1.05729 1.07598 1.68150 1.20962 0.90962 0.83227 0.81056 1.90554 1.71404 1.32993 1.54608 1.22502 0.90758 0.92295 1.05558 1.68731 1.14697 1.18720 1.17607 1.24484 0.97110 1.00459 0.92389 1.22557 0.83386 1.01313 0.90619 1.45643 1.30750 1.11574 1.44861 1.20363 0.84713 0.84767 0.81439 1.90795 1.60383 1.27622 1.63048 1.19909 0.84117 0.85093 0.81193 1.43437 1.34908 1.10927 1.47495 1.90822 1.60378 1.27649 1.63720 1.24368 0.88396 0.98842 1.00906 0.91159 0.77403 0.85535 0.88435 0.89108 0.91735 0.86160 0.73794 0.74543 0.74171 0.87207 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.03 13.96 21.66 0.30 -56.73 16 2 C -0.02 -0.97 5.50 84.92 0.47 -0.51 16 3 Si 0.97 38.53 27.74 68.60 1.90 40.43 16 4 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 5 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.23 -7.52 6.52 99.48 0.65 -6.87 16 7 C -0.33 -19.49 10.16 84.04 0.85 -18.63 16 8 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 9 N -0.59 -27.92 5.09 -306.98 -1.56 -29.48 16 10 C 0.45 20.44 7.85 87.66 0.69 21.13 16 11 O -0.61 -35.03 16.01 -3.07 -0.05 -35.08 16 12 C 0.02 0.59 5.30 85.56 0.45 1.04 16 13 N -0.47 -13.51 5.82 -932.48 -5.43 -18.94 16 14 C -0.01 -0.37 7.53 83.58 0.63 0.26 16 15 C 0.13 2.52 4.59 45.45 0.21 2.72 16 16 N -0.68 -10.96 5.39 -443.01 -2.39 -13.35 16 17 C 0.51 9.50 7.89 87.27 0.69 10.19 16 18 O -0.54 -12.99 16.07 -3.24 -0.05 -13.04 16 19 C 0.52 8.25 8.16 87.27 0.71 8.96 16 20 N -0.80 -6.97 8.87 -174.50 -1.55 -8.51 16 21 O -0.55 -11.24 17.31 -3.23 -0.06 -11.29 16 22 C 0.00 0.06 7.45 83.58 0.62 0.68 16 23 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 24 H 0.39 14.90 5.76 -92.71 -0.53 14.37 16 25 H 0.13 2.82 8.08 -2.39 -0.02 2.80 16 26 H 0.10 2.16 7.30 -2.39 -0.02 2.14 16 27 H 0.09 1.97 7.42 -2.39 -0.02 1.95 16 28 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.12 2.80 7.45 -2.39 -0.02 2.78 16 30 H 0.42 5.25 8.23 -92.71 -0.76 4.49 16 31 H 0.42 2.77 8.30 -92.71 -0.77 2.00 16 32 H 0.42 1.85 8.93 -92.71 -0.83 1.02 16 33 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.11 1.17 7.90 -2.39 -0.02 1.15 16 Total: -1.00 -86.13 302.75 -5.31 -91.44 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: -1.75 Total: 28.69 kcal Atomic # 6 Polarization: 20.53 SS G_CDS: 5.32 Total: 25.86 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -10.62 Total: -127.01 kcal Atomic # 8 Polarization: -59.25 SS G_CDS: -0.16 Total: -59.41 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 1.90 Total: 40.43 kcal Total: -86.13 -5.31 -91.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481579478.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.097 kcal (2) G-P(sol) polarization free energy of solvation -86.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds