Wall clock time and date at job start Mon Mar 30 2020 01:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46497 * 119.99931 * 2 1 4 4 C 1.53006 * 109.46946 * 89.99830 * 3 2 1 5 5 H 1.09004 * 109.47066 * 304.99866 * 4 3 2 6 6 O 1.42895 * 109.47151 * 64.99922 * 4 3 2 7 7 C 1.53004 * 109.46962 * 185.00181 * 4 3 2 8 8 N 1.46502 * 109.46838 * 180.02562 * 7 4 3 9 9 C 1.36939 * 119.99626 * 179.71896 * 8 7 4 10 10 H 1.07993 * 120.00144 * 0.28239 * 9 8 7 11 11 C 1.38813 * 119.99574 * 180.27511 * 9 8 7 12 12 N 1.31622 * 119.99806 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00351 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47013 * 89.99624 * 13 11 9 15 15 H 1.48502 * 109.47115 * 209.99906 * 13 11 9 16 16 H 1.48503 * 109.46845 * 330.00019 * 13 11 9 17 17 C 1.34771 * 120.00037 * 179.97438 * 2 1 3 18 18 O 1.21497 * 120.00258 * 185.25408 * 17 2 1 19 19 C 1.48283 * 119.99853 * 5.25014 * 17 2 1 20 20 C 1.47492 * 128.71018 * 185.95812 * 19 17 2 21 21 N 1.30647 * 102.71475 * 180.02562 * 20 19 17 22 22 O 1.20834 * 109.62004 * 359.97438 * 21 20 19 23 23 N 1.20903 * 115.90839 * 359.70178 * 22 21 20 24 24 H 1.09002 * 109.46916 * 95.26634 * 1 2 3 25 25 H 1.08992 * 109.47128 * 215.26917 * 1 2 3 26 26 H 1.08998 * 109.47191 * 335.27306 * 1 2 3 27 27 H 1.08999 * 109.47377 * 330.00005 * 3 2 1 28 28 H 1.08998 * 109.47596 * 209.99694 * 3 2 1 29 29 H 0.96702 * 113.99664 * 59.99638 * 6 4 3 30 30 H 1.08996 * 109.47451 * 59.99969 * 7 4 3 31 31 H 1.09004 * 109.46973 * 299.99743 * 7 4 3 32 32 H 0.97001 * 120.00259 * 0.02562 * 8 7 4 33 33 H 0.96995 * 120.00100 * 179.97438 * 12 11 9 34 34 H 1.08004 * 128.64046 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 1 1.5061 1.7549 1.9816 6 8 3.3209 0.7725 2.0815 7 6 3.1060 3.0938 1.4444 8 7 3.3506 3.5165 2.8256 9 6 3.9375 4.7279 3.0772 10 1 4.2157 5.3737 2.2576 11 6 4.1745 5.1258 4.3858 12 7 4.7381 6.2904 4.6276 13 14 3.6937 4.0086 5.8035 14 1 4.8295 3.1107 6.1333 15 1 3.3539 4.8336 6.9906 16 1 2.5153 3.1933 5.4135 17 6 2.1390 -1.1671 0.0005 18 8 3.3501 -1.1694 0.0969 19 6 1.4022 -2.4487 -0.1164 20 6 1.9236 -3.8248 -0.0176 21 7 0.8528 -4.5516 -0.1961 22 8 -0.1029 -3.8315 -0.3643 23 7 0.1181 -2.6434 -0.3285 24 1 -0.3633 -0.0943 -1.0234 25 1 -0.3633 -0.8390 0.5933 26 1 -0.3633 0.9334 0.4299 27 1 1.6085 2.0284 -0.5138 28 1 3.1500 1.1385 -0.5138 29 1 4.1836 0.6811 1.6543 30 1 2.4436 3.8092 0.9571 31 1 4.0524 3.0493 0.9054 32 1 3.1010 2.9363 3.5618 33 1 4.9034 6.5687 5.5420 34 1 2.9384 -4.1505 0.1578 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486306237.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:10 Heat of formation + Delta-G solvation = 63.035330 kcal Electronic energy + Delta-G solvation = -20606.528460 eV Core-core repulsion = 17160.447370 eV Total energy + Delta-G solvation = -3446.081090 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.26468 -40.26668 -37.57383 -35.83196 -34.94750 -34.74887 -34.13937 -31.50676 -30.00728 -27.31903 -26.97779 -25.07419 -24.14587 -22.45211 -21.30558 -20.34186 -19.40155 -18.49710 -17.76299 -17.71552 -16.79586 -16.24469 -15.48941 -15.18996 -14.97944 -14.51453 -14.16601 -13.65045 -13.40431 -13.31929 -13.25312 -12.86588 -12.48690 -12.34149 -11.98660 -11.73486 -11.62109 -11.26435 -11.12765 -10.93651 -10.85220 -10.58936 -10.21153 -9.89547 -9.59818 -8.93111 -8.81663 -7.25305 -5.78100 -3.13841 0.40599 0.97725 2.22213 2.65667 3.04832 3.14414 3.40494 3.46104 3.47617 3.51586 4.24892 4.41668 4.59533 4.61431 4.76932 4.84105 4.98362 5.06198 5.19144 5.40892 5.48484 5.50021 5.52647 5.78258 5.82668 6.09670 6.39074 6.56155 6.87220 7.61840 7.94279 8.02936 8.05075 8.40870 9.20645 9.92965 10.12937 11.40029 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.036722 B = 0.003822 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.293597 B = 7324.140925 C = 7524.249655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.591 5.591 3 C 0.087 3.913 4 C 0.081 3.919 5 H 0.097 0.903 6 O -0.550 6.550 7 C 0.130 3.870 8 N -0.749 5.749 9 C -0.248 4.248 10 H 0.089 0.911 11 C 0.006 3.994 12 N -0.934 5.934 13 Si 0.887 3.113 14 H -0.283 1.283 15 H -0.291 1.291 16 H -0.277 1.277 17 C 0.605 3.395 18 O -0.503 6.503 19 C -0.033 4.033 20 C 0.038 3.962 21 N -0.354 5.354 22 O 0.335 5.665 23 N -0.321 5.321 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.378 0.622 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.366 0.634 33 H 0.260 0.740 34 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.163 -19.046 -12.985 25.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.323 5.323 3 C -0.036 4.036 4 C 0.020 3.980 5 H 0.114 0.886 6 O -0.356 6.356 7 C 0.002 3.998 8 N -0.395 5.395 9 C -0.377 4.377 10 H 0.107 0.893 11 C -0.190 4.190 12 N -0.582 5.582 13 Si 0.718 3.282 14 H -0.210 1.210 15 H -0.218 1.218 16 H -0.203 1.203 17 C 0.389 3.611 18 O -0.376 6.376 19 C -0.199 4.199 20 C -0.148 4.148 21 N -0.078 5.078 22 O 0.111 5.889 23 N -0.043 5.043 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.226 0.774 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.200 0.800 33 H 0.070 0.930 34 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -11.023 -19.244 -12.755 25.583 hybrid contribution 0.938 -0.227 0.866 1.297 sum -10.085 -19.470 -11.888 24.942 Atomic orbital electron populations 1.22054 0.78269 1.03961 1.02625 1.47546 1.07653 1.05434 1.71704 1.22415 0.98468 0.83690 0.99028 1.22568 0.94692 0.89309 0.91433 0.88563 1.86526 1.29474 1.62493 1.57088 1.21201 0.97701 0.92144 0.88780 1.42572 1.75084 1.20576 1.01309 1.19044 1.31814 0.93230 0.93646 0.89275 1.24666 1.00599 0.96772 0.96985 1.69706 1.48373 1.20504 1.19568 0.86500 0.78567 0.80256 0.82903 1.20961 1.21788 1.20349 1.16443 0.86047 0.80812 0.77839 1.90819 1.12339 1.85797 1.48674 1.26289 0.89367 0.97908 1.06303 1.27760 1.01159 0.86690 0.99200 1.75075 0.96128 1.20698 1.15889 1.85086 1.31931 1.09718 1.62164 1.75547 1.16826 0.98462 1.13463 0.91766 0.90417 0.90005 0.88641 0.88857 0.77421 0.94808 0.95156 0.80010 0.93016 0.75610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 9.41 59.85 0.56 1.18 16 2 N -0.59 -6.42 2.86 -182.53 -0.52 -6.94 16 3 C 0.09 0.96 5.08 -4.04 -0.02 0.94 16 4 C 0.08 1.19 3.30 -26.73 -0.09 1.10 16 5 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 6 O -0.55 -9.22 11.80 -48.42 -0.57 -9.80 16 7 C 0.13 2.37 5.92 -4.04 -0.02 2.35 16 8 N -0.75 -17.98 5.30 -59.91 -0.32 -18.30 16 9 C -0.25 -7.08 10.47 -15.06 -0.16 -7.23 16 10 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 11 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 12 N -0.93 -29.58 13.97 55.49 0.78 -28.81 16 13 Si 0.89 22.79 27.74 -169.99 -4.71 18.08 16 14 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 16 H -0.28 -6.81 6.52 56.52 0.37 -6.44 16 17 C 0.60 7.32 7.38 -12.13 -0.09 7.23 16 18 O -0.50 -7.20 15.32 -7.82 -0.12 -7.32 16 19 C -0.03 -0.34 7.10 -80.07 -0.57 -0.91 16 20 C 0.04 0.32 12.63 -14.29 -0.18 0.14 16 21 N -0.35 -3.20 12.22 30.72 0.38 -2.83 16 22 O 0.34 3.00 11.65 27.27 0.32 3.32 16 23 N -0.32 -3.01 9.35 33.49 0.31 -2.70 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.68 6.00 -51.93 -0.31 0.37 16 26 H 0.08 0.60 8.03 -51.93 -0.42 0.18 16 27 H 0.10 0.85 8.07 -51.93 -0.42 0.43 16 28 H 0.09 1.06 7.50 -51.93 -0.39 0.67 16 29 H 0.38 5.77 8.62 45.56 0.39 6.17 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.37 8.91 5.40 -40.82 -0.22 8.69 16 33 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 34 H 0.23 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 298.35 15.07 4.50 4.50 Total: -1.00 -34.14 298.35 -3.70 -37.84 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -3.07 Total: 8.08 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -0.66 Total: 4.88 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.62 Total: -59.57 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.37 Total: -13.80 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.71 Total: 18.08 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.14 -3.70 -37.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486306237.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.876 kcal (2) G-P(sol) polarization free energy of solvation -34.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds