Wall clock time and date at job start Mon Mar 30 2020 01:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46497 * 119.99931 * 2 1 4 4 C 1.53006 * 109.46946 * 89.99830 * 3 2 1 5 5 H 1.09004 * 109.47066 * 304.99866 * 4 3 2 6 6 O 1.42895 * 109.47151 * 64.99922 * 4 3 2 7 7 C 1.53004 * 109.46962 * 185.00181 * 4 3 2 8 8 N 1.46502 * 109.46838 * 180.02562 * 7 4 3 9 9 C 1.36939 * 119.99626 * 179.71896 * 8 7 4 10 10 H 1.07993 * 120.00144 * 0.28239 * 9 8 7 11 11 C 1.38813 * 119.99574 * 180.27511 * 9 8 7 12 12 N 1.31622 * 119.99806 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00351 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47013 * 89.99624 * 13 11 9 15 15 H 1.48502 * 109.47115 * 209.99906 * 13 11 9 16 16 H 1.48503 * 109.46845 * 330.00019 * 13 11 9 17 17 C 1.34771 * 120.00037 * 179.97438 * 2 1 3 18 18 O 1.21497 * 120.00258 * 185.25408 * 17 2 1 19 19 C 1.48283 * 119.99853 * 5.25014 * 17 2 1 20 20 C 1.47492 * 128.71018 * 185.95812 * 19 17 2 21 21 N 1.30647 * 102.71475 * 180.02562 * 20 19 17 22 22 O 1.20834 * 109.62004 * 359.97438 * 21 20 19 23 23 N 1.20903 * 115.90839 * 359.70178 * 22 21 20 24 24 H 1.09002 * 109.46916 * 95.26634 * 1 2 3 25 25 H 1.08992 * 109.47128 * 215.26917 * 1 2 3 26 26 H 1.08998 * 109.47191 * 335.27306 * 1 2 3 27 27 H 1.08999 * 109.47377 * 330.00005 * 3 2 1 28 28 H 1.08998 * 109.47596 * 209.99694 * 3 2 1 29 29 H 0.96702 * 113.99664 * 59.99638 * 6 4 3 30 30 H 1.08996 * 109.47451 * 59.99969 * 7 4 3 31 31 H 1.09004 * 109.46973 * 299.99743 * 7 4 3 32 32 H 0.97001 * 120.00259 * 0.02562 * 8 7 4 33 33 H 0.96995 * 120.00100 * 179.97438 * 12 11 9 34 34 H 1.08004 * 128.64046 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 1 1.5061 1.7549 1.9816 6 8 3.3209 0.7725 2.0815 7 6 3.1060 3.0938 1.4444 8 7 3.3506 3.5165 2.8256 9 6 3.9375 4.7279 3.0772 10 1 4.2157 5.3737 2.2576 11 6 4.1745 5.1258 4.3858 12 7 4.7381 6.2904 4.6276 13 14 3.6937 4.0086 5.8035 14 1 4.8295 3.1107 6.1333 15 1 3.3539 4.8336 6.9906 16 1 2.5153 3.1933 5.4135 17 6 2.1390 -1.1671 0.0005 18 8 3.3501 -1.1694 0.0969 19 6 1.4022 -2.4487 -0.1164 20 6 1.9236 -3.8248 -0.0176 21 7 0.8528 -4.5516 -0.1961 22 8 -0.1029 -3.8315 -0.3643 23 7 0.1181 -2.6434 -0.3285 24 1 -0.3633 -0.0943 -1.0234 25 1 -0.3633 -0.8390 0.5933 26 1 -0.3633 0.9334 0.4299 27 1 1.6085 2.0284 -0.5138 28 1 3.1500 1.1385 -0.5138 29 1 4.1836 0.6811 1.6543 30 1 2.4436 3.8092 0.9571 31 1 4.0524 3.0493 0.9054 32 1 3.1010 2.9363 3.5618 33 1 4.9034 6.5687 5.5420 34 1 2.9384 -4.1505 0.1578 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486306237.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:10 Heat of formation + Delta-G solvation = 36.204768 kcal Electronic energy + Delta-G solvation = -20607.691921 eV Core-core repulsion = 17160.447370 eV Total energy + Delta-G solvation = -3447.244551 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.96881 -41.17877 -38.81721 -36.77921 -36.04828 -35.65680 -35.43756 -33.48120 -31.33012 -28.28688 -28.00877 -26.17671 -25.00329 -24.01125 -22.76166 -21.19696 -20.10838 -19.81248 -19.21673 -18.55409 -17.92151 -17.21241 -16.63976 -16.49388 -16.25724 -15.84247 -15.42208 -15.03313 -14.84385 -14.33522 -14.09413 -14.01283 -13.77755 -13.58345 -13.27522 -12.88960 -12.77583 -12.57751 -12.35817 -12.28282 -11.98466 -11.86106 -11.82571 -11.54543 -11.14722 -11.03376 -9.76474 -9.31852 -8.05315 -5.37922 -0.35615 0.30556 1.36679 1.39821 1.40870 1.46627 1.79825 2.30606 2.46269 2.47136 2.80635 3.25942 3.36553 3.50957 3.67060 3.72387 3.97938 4.07322 4.16228 4.32063 4.42453 4.47876 4.57797 4.72127 4.88262 4.92238 5.19183 5.25261 5.72909 6.02974 6.19065 6.73822 6.80924 7.06386 7.34545 7.83348 8.00670 9.16087 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.036722 B = 0.003822 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.293597 B = 7324.140925 C = 7524.249655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.590 5.590 3 C 0.095 3.905 4 C 0.092 3.908 5 H 0.097 0.903 6 O -0.567 6.567 7 C 0.125 3.875 8 N -0.755 5.755 9 C -0.234 4.234 10 H 0.061 0.939 11 C -0.062 4.062 12 N -0.982 5.982 13 Si 0.955 3.045 14 H -0.283 1.283 15 H -0.293 1.293 16 H -0.258 1.258 17 C 0.600 3.400 18 O -0.532 6.532 19 C -0.050 4.050 20 C 0.048 3.952 21 N -0.362 5.362 22 O 0.340 5.660 23 N -0.315 5.315 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.125 0.875 28 H 0.091 0.909 29 H 0.382 0.618 30 H 0.047 0.953 31 H 0.032 0.968 32 H 0.366 0.634 33 H 0.258 0.742 34 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.569 -20.793 -13.510 27.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.322 5.322 3 C -0.028 4.028 4 C 0.031 3.969 5 H 0.115 0.885 6 O -0.373 6.373 7 C -0.002 4.002 8 N -0.401 5.401 9 C -0.365 4.365 10 H 0.079 0.921 11 C -0.253 4.253 12 N -0.633 5.633 13 Si 0.783 3.217 14 H -0.209 1.209 15 H -0.220 1.220 16 H -0.183 1.183 17 C 0.385 3.615 18 O -0.408 6.408 19 C -0.214 4.214 20 C -0.138 4.138 21 N -0.086 5.086 22 O 0.114 5.886 23 N -0.036 5.036 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.114 0.886 27 H 0.143 0.857 28 H 0.110 0.890 29 H 0.231 0.769 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.199 0.801 33 H 0.067 0.933 34 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -12.479 -21.012 -13.329 27.837 hybrid contribution 1.357 0.316 0.911 1.665 sum -11.122 -20.696 -12.418 26.575 Atomic orbital electron populations 1.22214 0.76677 1.04550 1.03649 1.47631 1.08628 1.04935 1.70977 1.22280 0.99340 0.84629 0.96507 1.22483 0.93747 0.86934 0.93739 0.88538 1.86498 1.30064 1.62776 1.58012 1.21447 0.98375 0.94598 0.85799 1.42620 1.74669 1.19049 1.03793 1.19075 1.30400 0.94232 0.92834 0.92057 1.25457 1.01603 0.98400 0.99879 1.69869 1.50658 1.22746 1.20010 0.85405 0.78744 0.78293 0.79231 1.20909 1.21957 1.18297 1.16688 0.85898 0.81573 0.77361 1.90800 1.13517 1.86333 1.50106 1.26143 0.89731 0.97872 1.07681 1.28174 1.01961 0.85824 0.97844 1.75094 0.96280 1.20758 1.16492 1.85085 1.31990 1.09535 1.61950 1.75534 1.16520 0.98678 1.12869 0.90295 0.90856 0.88613 0.85714 0.89018 0.76924 0.93470 0.94962 0.80067 0.93269 0.73309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.99 9.41 127.77 1.20 2.19 16 2 N -0.59 -11.40 2.86 -849.69 -2.43 -13.82 16 3 C 0.10 1.87 5.08 86.38 0.44 2.31 16 4 C 0.09 2.50 3.30 30.60 0.10 2.60 16 5 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 6 O -0.57 -18.08 11.80 -136.37 -1.61 -19.69 16 7 C 0.12 4.34 5.92 86.38 0.51 4.85 16 8 N -0.76 -35.32 5.30 -343.44 -1.82 -37.14 16 9 C -0.23 -13.43 10.47 84.03 0.88 -12.55 16 10 H 0.06 3.79 8.06 -2.91 -0.02 3.76 16 11 C -0.06 -3.68 5.50 84.86 0.47 -3.22 16 12 N -0.98 -63.37 13.97 21.65 0.30 -63.07 16 13 Si 0.96 47.01 27.74 68.60 1.90 48.91 16 14 H -0.28 -13.79 7.11 99.48 0.71 -13.09 16 15 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 16 H -0.26 -11.72 6.52 99.48 0.65 -11.07 16 17 C 0.60 13.50 7.38 86.92 0.64 14.14 16 18 O -0.53 -14.59 15.32 8.90 0.14 -14.46 16 19 C -0.05 -0.92 7.10 44.29 0.31 -0.61 16 20 C 0.05 0.71 12.63 87.31 1.10 1.82 16 21 N -0.36 -5.88 12.22 -61.43 -0.75 -6.63 16 22 O 0.34 5.48 11.65 140.86 1.64 7.12 16 23 N -0.32 -5.33 9.35 -52.06 -0.49 -5.81 16 24 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.07 1.12 6.00 -2.39 -0.01 1.10 16 26 H 0.10 1.08 8.03 -2.39 -0.02 1.06 16 27 H 0.12 1.74 8.07 -2.39 -0.02 1.73 16 28 H 0.09 1.89 7.50 -2.39 -0.02 1.87 16 29 H 0.38 11.27 8.62 -74.06 -0.64 10.63 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.37 17.08 5.40 -92.71 -0.50 16.58 16 33 H 0.26 15.88 8.31 -92.71 -0.77 15.10 16 34 H 0.25 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -73.16 298.35 2.51 -70.66 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -0.04 Total: 22.40 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 5.66 Total: 11.53 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -5.18 Total: -126.48 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: 0.17 Total: -27.02 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.90 Total: 48.91 kcal Total: -73.16 2.51 -70.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486306237.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.861 kcal (2) G-P(sol) polarization free energy of solvation -73.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds