Wall clock time and date at job start Mon Mar 30 2020 01:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00233 * 2 1 4 4 H 1.48499 * 109.47019 * 239.99686 * 3 2 1 5 5 H 1.48499 * 109.46963 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47412 * 119.99651 * 3 2 1 7 7 C 1.38810 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99879 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99844 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46902 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00307 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99877 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00178 * 180.02562 * 13 11 10 15 15 C 1.53511 * 114.17007 * 205.00241 * 14 13 11 16 16 N 1.47481 * 87.93267 * 220.32500 * 15 14 13 17 17 C 1.46903 * 110.99958 * 138.70300 * 16 15 14 18 18 C 1.52996 * 109.47062 * 170.00424 * 17 16 15 19 19 C 1.53000 * 117.49997 * 185.00089 * 18 17 16 20 20 C 1.53002 * 60.02940 * 252.49592 * 19 18 17 21 21 C 1.47485 * 87.83334 * 27.01069 * 16 15 14 22 22 H 0.96994 * 120.00124 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47206 * 60.00213 * 10 9 7 24 24 H 1.09001 * 109.47014 * 300.00216 * 10 9 7 25 25 H 0.97003 * 120.00187 * 0.02562 * 13 11 10 26 26 H 1.08999 * 113.37938 * 338.07731 * 14 13 11 27 27 H 1.09003 * 113.47857 * 105.56151 * 15 14 13 28 28 H 1.09004 * 113.53360 * 335.10161 * 15 14 13 29 29 H 1.08994 * 109.47021 * 50.00022 * 17 16 15 30 30 H 1.09001 * 109.47083 * 290.00171 * 17 16 15 31 31 H 1.09008 * 115.56055 * 330.68602 * 18 17 16 32 32 H 1.09002 * 117.49833 * 359.97438 * 19 18 17 33 33 H 1.09002 * 117.49953 * 144.99738 * 19 18 17 34 34 H 1.09000 * 117.49996 * 107.50493 * 20 19 18 35 35 H 1.08999 * 117.49664 * 252.51862 * 20 19 18 36 36 H 1.09001 * 113.47669 * 87.75739 * 21 16 15 37 37 H 1.09001 * 113.47400 * 218.22335 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0021 11 6 1.9873 -5.3027 0.0017 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3431 0.0022 14 6 2.3302 -7.7151 0.0012 15 6 3.2979 -8.7491 0.5938 16 7 2.8930 -9.6680 -0.4863 17 6 4.0528 -10.3916 -1.0243 18 6 3.5715 -11.5044 -1.9575 19 6 4.6275 -12.4517 -2.5306 20 6 3.9654 -11.4091 -3.4336 21 6 2.5845 -8.4806 -1.3048 22 1 -0.4850 0.8400 -0.0004 23 1 3.1237 -3.7310 0.8925 24 1 3.1251 -3.7318 -0.8874 25 1 3.8008 -6.1836 0.0032 26 1 1.3090 -7.7948 0.3738 27 1 3.0106 -9.0933 1.5873 28 1 4.3441 -8.4479 0.5383 29 1 4.6223 -10.8268 -0.2032 30 1 4.6865 -9.7003 -1.5798 31 1 2.5929 -11.9238 -1.7239 32 1 5.6651 -12.2819 -2.2431 33 1 4.3437 -13.4944 -2.6737 34 1 4.5673 -10.5536 -3.7400 35 1 3.2457 -11.7658 -4.1705 36 1 3.4400 -8.1070 -1.8676 37 1 1.6926 -8.5974 -1.9204 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494338976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:22 Heat of formation + Delta-G solvation = -1.030748 kcal Electronic energy + Delta-G solvation = -17582.955788 eV Core-core repulsion = 14680.389799 eV Total energy + Delta-G solvation = -2902.565989 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.63753 -40.01020 -38.00041 -35.00893 -34.57419 -31.53966 -29.83239 -27.66208 -26.98757 -25.25646 -23.21838 -21.97010 -21.32663 -21.24537 -19.77615 -18.00406 -17.77987 -16.87297 -16.73207 -16.60154 -16.30478 -15.97887 -15.52355 -15.07864 -14.83966 -14.56176 -13.89990 -13.78894 -13.69553 -13.19222 -13.16233 -12.87047 -12.76980 -12.60963 -12.38300 -11.98811 -11.97602 -11.73088 -11.18008 -11.12123 -10.99508 -10.79629 -10.26985 -10.11111 -9.95745 -8.66067 -8.33709 -6.11901 1.27167 1.44616 1.47348 1.56825 1.58000 2.20069 2.28778 2.84189 3.00316 3.02418 3.33376 3.44647 3.75347 3.84132 3.94434 3.96260 4.08786 4.18304 4.32044 4.34651 4.40607 4.52122 4.58022 4.63912 4.72091 4.78360 4.82557 4.95915 5.02845 5.23551 5.26816 5.33310 5.42409 5.45623 6.01642 6.20411 6.49281 7.07399 7.23796 8.75248 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.048002 B = 0.002817 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.173782 B = 9938.040166 C =10086.456372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.536 3.464 12 O -0.564 6.564 13 N -0.700 5.700 14 C 0.112 3.888 15 C 0.004 3.996 16 N -0.477 5.477 17 C 0.054 3.946 18 C -0.155 4.155 19 C -0.169 4.169 20 C -0.188 4.188 21 C -0.009 4.009 22 H 0.271 0.729 23 H 0.112 0.888 24 H 0.111 0.889 25 H 0.418 0.582 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.765 -21.282 -2.506 26.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.280 4.280 11 C 0.322 3.678 12 O -0.442 6.442 13 N -0.354 5.354 14 C 0.006 3.994 15 C -0.125 4.125 16 N -0.200 5.200 17 C -0.075 4.075 18 C -0.173 4.173 19 C -0.207 4.207 20 C -0.225 4.225 21 C -0.139 4.139 22 H 0.080 0.920 23 H 0.130 0.870 24 H 0.129 0.871 25 H 0.256 0.744 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.156 -22.084 -2.395 25.322 hybrid contribution 2.272 1.787 -0.295 2.906 sum 14.428 -20.297 -2.690 25.047 Atomic orbital electron populations 1.70175 1.08000 1.28670 1.47959 1.26144 0.95969 1.03375 0.93773 0.84999 0.77787 0.75670 0.79512 1.18641 1.20505 1.18605 1.23174 0.95363 0.91960 1.58909 0.89804 1.85618 1.10671 0.99317 1.97064 1.23375 1.03519 0.94174 1.06954 1.20129 0.86282 0.86745 0.74611 1.90702 1.17523 1.86050 1.49892 1.45647 1.10146 1.04344 1.75223 1.22554 0.99754 0.79472 0.97633 1.24246 0.99201 0.90814 0.98234 1.68820 1.30630 1.14403 1.06138 1.22282 0.91675 0.95441 0.98066 1.22198 1.00055 1.00276 0.94807 1.23031 0.98111 0.96260 1.03289 1.23111 1.04018 1.02101 0.93253 1.24432 1.02432 0.90302 0.96713 0.92009 0.86980 0.87062 0.74419 0.88124 0.88265 0.88366 0.89361 0.92567 0.88310 0.87872 0.88146 0.88686 0.88931 0.89482 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.02 13.22 21.65 0.29 -55.74 16 2 C 0.01 0.69 5.49 84.86 0.47 1.15 16 3 Si 1.00 43.28 29.55 68.60 2.03 45.30 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 7 C -0.55 -30.94 9.50 67.96 0.65 -30.30 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -8.49 20.57 -56.49 -1.16 -9.65 16 10 C -0.13 -4.95 6.16 71.24 0.44 -4.51 16 11 C 0.54 19.23 7.85 87.66 0.69 19.92 16 12 O -0.56 -25.98 15.46 -3.04 -0.05 -26.02 16 13 N -0.70 -16.54 5.39 -441.70 -2.38 -18.92 16 14 C 0.11 2.50 4.59 45.44 0.21 2.71 16 15 C 0.00 0.07 7.45 83.57 0.62 0.69 16 16 N -0.48 -8.43 6.33 -927.93 -5.88 -14.31 16 17 C 0.05 0.73 5.10 86.30 0.44 1.17 16 18 C -0.15 -2.25 6.02 -10.77 -0.06 -2.32 16 19 C -0.17 -1.92 10.25 30.60 0.31 -1.61 16 20 C -0.19 -2.49 10.18 30.62 0.31 -2.18 16 21 C -0.01 -0.17 7.52 83.57 0.63 0.46 16 22 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 23 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 24 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 25 H 0.42 6.65 8.75 -92.71 -0.81 5.83 16 26 H 0.10 2.89 7.46 -2.39 -0.02 2.87 16 27 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.10 1.02 7.90 -2.38 -0.02 1.00 16 29 H 0.09 1.02 8.08 -2.39 -0.02 1.01 16 30 H 0.06 0.68 7.04 -2.39 -0.02 0.67 16 31 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.09 1.19 8.03 -2.39 -0.02 1.17 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 1.45 7.42 -2.39 -0.02 1.43 16 37 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -74.53 327.88 -2.20 -76.74 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.25 Total: 17.42 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 4.70 Total: -14.82 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -7.97 Total: -88.96 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.05 Total: -26.02 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal Total: -74.53 -2.20 -76.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494338976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.706 kcal (2) G-P(sol) polarization free energy of solvation -74.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds