Wall clock time and date at job start Mon Mar 30 2020 01:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47371 * 2 1 4 4 C 1.53006 * 109.46912 * 119.99702 * 2 1 3 5 5 H 1.09006 * 109.47039 * 185.00008 * 4 2 1 6 6 F 1.39894 * 109.47142 * 304.99954 * 4 2 1 7 7 C 1.50696 * 109.47075 * 65.00272 * 4 2 1 8 8 O 1.20830 * 120.00003 * 314.99924 * 7 4 2 9 9 O 1.34227 * 120.00298 * 134.99963 * 7 4 2 10 10 C 1.45199 * 117.00010 * 180.02562 * 9 7 4 11 11 H 1.09002 * 109.47177 * 329.99893 * 10 9 7 12 12 C 1.50699 * 109.47289 * 89.99830 * 10 9 7 13 13 H 1.07996 * 120.00370 * 239.99671 * 12 10 9 14 14 C 1.37882 * 119.99790 * 60.00053 * 12 10 9 15 15 N 1.31513 * 119.99822 * 180.02562 * 14 12 10 16 16 Si 1.86799 * 120.00076 * 359.97438 * 14 12 10 17 17 H 1.48499 * 109.47136 * 90.00205 * 16 14 12 18 18 H 1.48499 * 109.47078 * 209.99916 * 16 14 12 19 19 H 1.48496 * 109.47272 * 329.99944 * 16 14 12 20 20 C 1.50703 * 109.46928 * 209.99941 * 10 9 7 21 21 C 1.34514 * 125.79074 * 145.00208 * 20 10 9 22 22 C 1.41380 * 106.84031 * 180.02562 * 21 20 10 23 23 C 1.34511 * 106.84419 * 359.97438 * 22 21 20 24 24 O 1.34308 * 125.78671 * 324.68991 * 20 10 9 25 25 H 1.09003 * 109.47018 * 300.00220 * 1 2 3 26 26 H 1.08999 * 109.46633 * 59.99750 * 1 2 3 27 27 H 1.08997 * 109.47303 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47279 * 239.99721 * 2 1 3 29 29 H 1.08999 * 109.46550 * 299.99921 * 3 2 1 30 30 H 1.08994 * 109.47147 * 59.99640 * 3 2 1 31 31 H 1.08993 * 109.47315 * 179.97438 * 3 2 1 32 32 H 0.97002 * 119.99998 * 180.02562 * 15 14 12 33 33 H 1.08000 * 126.57648 * 0.02667 * 21 20 10 34 34 H 1.08000 * 126.57920 * 179.97438 * 22 21 20 35 35 H 1.08000 * 125.79136 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1263 -0.6443 1.2953 6 9 1.4821 -0.1314 2.3886 7 6 1.6413 -2.1732 1.1890 8 8 0.5184 -2.4785 0.8634 9 8 2.5336 -3.1276 1.4969 10 6 2.0801 -4.5046 1.4164 11 1 1.0129 -4.5490 1.6336 12 6 2.3330 -5.0365 0.0293 13 1 1.5079 -5.3843 -0.5745 14 6 3.6180 -5.0792 -0.4690 15 7 3.8386 -5.5429 -1.6798 16 14 5.0451 -4.4772 0.5750 17 1 5.5837 -5.6061 1.3755 18 1 6.1130 -3.9424 -0.3075 19 1 4.5733 -3.4044 1.4870 20 6 2.8322 -5.3405 2.4198 21 6 2.3315 -6.3811 3.1097 22 6 3.3745 -6.8682 3.9306 23 6 4.4503 -6.0966 3.6928 24 8 4.1177 -5.1766 2.7725 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1300 1.4425 0.0005 32 1 4.7426 -5.5733 -2.0302 33 1 1.3258 -6.7698 3.0484 34 1 3.3182 -7.7002 4.6169 35 1 5.4187 -6.2020 4.1591 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520425633.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:01 Heat of formation + Delta-G solvation = -111.834320 kcal Electronic energy + Delta-G solvation = -21641.091331 eV Core-core repulsion = 18135.214611 eV Total energy + Delta-G solvation = -3505.876720 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.75076 -41.99435 -39.57772 -36.28724 -34.91233 -33.09073 -32.39581 -30.67431 -28.05497 -27.01025 -26.75299 -23.12861 -21.59372 -20.97102 -19.89704 -19.79250 -17.92211 -17.40660 -16.92268 -16.23695 -16.01028 -15.70148 -15.29106 -14.63022 -14.21355 -13.90982 -13.65497 -13.17557 -13.02073 -12.81414 -12.49235 -12.41015 -12.05118 -11.98599 -11.79914 -11.55148 -11.30447 -11.09318 -10.81756 -10.74344 -10.55023 -10.25706 -9.66424 -9.43973 -9.26134 -9.06638 -8.75153 -7.74193 -6.42251 -4.56687 2.36020 2.73508 3.05329 3.09793 3.33095 3.39018 3.60019 4.06817 4.31290 4.49825 4.83318 4.91689 4.93020 5.07763 5.33203 5.47736 5.55063 5.60814 5.63569 5.77337 5.96700 6.00218 6.04544 6.12820 6.16092 6.38013 6.40894 6.52048 6.65038 6.77271 7.05475 7.15768 7.36079 7.79885 8.06537 8.42226 8.62197 9.16522 10.64451 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.021059 B = 0.007330 C = 0.006583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.247215 B = 3818.892696 C = 4252.374219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.113 4.113 3 C -0.146 4.146 4 C 0.106 3.894 5 H 0.108 0.892 6 F -0.190 7.190 7 C 0.442 3.558 8 O -0.491 6.491 9 O -0.351 6.351 10 C 0.249 3.751 11 H 0.092 0.908 12 C -0.536 4.536 13 H 0.092 0.908 14 C 0.088 3.912 15 N -0.864 5.864 16 Si 0.886 3.114 17 H -0.271 1.271 18 H -0.297 1.297 19 H -0.221 1.221 20 C 0.032 3.968 21 C -0.226 4.226 22 C -0.205 4.205 23 C -0.075 4.075 24 O -0.165 6.165 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.272 0.728 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.013 7.766 6.909 10.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.132 4.132 3 C -0.203 4.203 4 C 0.069 3.931 5 H 0.126 0.874 6 F -0.170 7.170 7 C 0.282 3.718 8 O -0.379 6.379 9 O -0.268 6.268 10 C 0.197 3.803 11 H 0.110 0.890 12 C -0.571 4.571 13 H 0.110 0.890 14 C -0.121 4.121 15 N -0.498 5.498 16 Si 0.718 3.282 17 H -0.199 1.199 18 H -0.225 1.225 19 H -0.147 1.147 20 C -0.018 4.018 21 C -0.246 4.246 22 C -0.224 4.224 23 C -0.141 4.141 24 O -0.063 6.063 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.035 7.798 6.579 10.203 hybrid contribution 0.811 -0.258 0.491 0.982 sum 0.775 7.540 7.070 10.365 Atomic orbital electron populations 1.22130 0.93252 1.05524 1.01285 1.21607 0.98651 0.96727 0.96236 1.21835 1.01066 0.94898 1.02538 1.21320 1.00028 0.87390 0.84400 0.87414 1.92832 1.87682 1.84272 1.52258 1.23545 0.84230 0.89118 0.74872 1.90489 1.21593 1.83380 1.42485 1.87000 1.42819 1.19061 1.77923 1.19338 0.93940 0.74513 0.92529 0.88998 1.21103 0.95672 1.43644 0.96714 0.89017 1.25206 0.99669 0.92283 0.94958 1.69923 1.22486 1.41450 1.15925 0.86576 0.80846 0.81635 0.79107 1.19927 1.22548 1.14687 1.23018 0.82027 0.99849 0.96954 1.21227 1.01130 1.00324 1.01891 1.21629 0.93684 1.02891 1.04202 1.23803 1.00616 0.94141 0.95545 1.84487 1.26990 1.48607 1.46167 0.92664 0.92791 0.88625 0.88713 0.91769 0.92070 0.92330 0.91844 0.83875 0.84149 0.79434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 8.71 37.16 0.32 -2.10 16 2 C -0.11 -1.64 2.75 -90.61 -0.25 -1.89 16 3 C -0.15 -1.65 9.11 37.16 0.34 -1.31 16 4 C 0.11 1.76 3.51 -27.88 -0.10 1.66 16 5 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 6 F -0.19 -3.15 16.03 2.25 0.04 -3.11 16 7 C 0.44 9.23 7.26 36.00 0.26 9.49 16 8 O -0.49 -10.99 13.02 -18.75 -0.24 -11.23 16 9 O -0.35 -8.13 6.69 -42.00 -0.28 -8.41 16 10 C 0.25 6.03 2.55 -29.03 -0.07 5.95 16 11 H 0.09 2.16 7.16 -51.93 -0.37 1.79 16 12 C -0.54 -14.88 9.51 -34.44 -0.33 -15.21 16 13 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 14 C 0.09 2.47 5.45 -17.82 -0.10 2.37 16 15 N -0.86 -25.40 13.96 55.43 0.77 -24.63 16 16 Si 0.89 21.83 22.92 -169.99 -3.90 17.93 16 17 H -0.27 -6.62 6.01 56.52 0.34 -6.28 16 18 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.22 -5.26 4.92 56.52 0.28 -4.98 16 20 C 0.03 0.73 5.34 -35.62 -0.19 0.54 16 21 C -0.23 -4.57 10.81 -39.70 -0.43 -5.00 16 22 C -0.20 -3.63 10.91 -39.70 -0.43 -4.06 16 23 C -0.07 -1.37 11.73 29.41 0.34 -1.03 16 24 O -0.16 -3.69 4.85 2.16 0.01 -3.68 16 25 H 0.05 0.78 7.69 -51.93 -0.40 0.38 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.10 1.68 5.26 -51.93 -0.27 1.40 16 28 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.67 7.93 -51.93 -0.41 0.26 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.14 2.58 8.06 -52.49 -0.42 2.16 16 34 H 0.14 1.98 8.06 -52.49 -0.42 1.55 16 35 H 0.19 2.63 8.06 -52.49 -0.42 2.20 16 LS Contribution 292.42 15.07 4.41 4.41 Total: -1.00 -31.00 292.42 -4.40 -35.41 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -4.58 Total: 3.90 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -0.63 Total: -10.58 kcal Atomic # 7 Polarization: -25.40 SS G_CDS: 0.77 Total: -24.63 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.51 Total: -23.33 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.04 Total: -3.11 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -3.90 Total: 17.93 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.00 -4.40 -35.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520425633.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.427 kcal (2) G-P(sol) polarization free energy of solvation -31.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds