Wall clock time and date at job start Mon Mar 30 2020 01:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47371 * 2 1 4 4 C 1.53006 * 109.46912 * 119.99702 * 2 1 3 5 5 H 1.09006 * 109.47039 * 185.00008 * 4 2 1 6 6 F 1.39894 * 109.47142 * 304.99954 * 4 2 1 7 7 C 1.50696 * 109.47075 * 65.00272 * 4 2 1 8 8 O 1.20830 * 120.00003 * 314.99924 * 7 4 2 9 9 O 1.34227 * 120.00298 * 134.99963 * 7 4 2 10 10 C 1.45199 * 117.00010 * 180.02562 * 9 7 4 11 11 H 1.09002 * 109.47177 * 329.99893 * 10 9 7 12 12 C 1.50699 * 109.47289 * 89.99830 * 10 9 7 13 13 H 1.07996 * 120.00370 * 239.99671 * 12 10 9 14 14 C 1.37882 * 119.99790 * 60.00053 * 12 10 9 15 15 N 1.31513 * 119.99822 * 180.02562 * 14 12 10 16 16 Si 1.86799 * 120.00076 * 359.97438 * 14 12 10 17 17 H 1.48499 * 109.47136 * 90.00205 * 16 14 12 18 18 H 1.48499 * 109.47078 * 209.99916 * 16 14 12 19 19 H 1.48496 * 109.47272 * 329.99944 * 16 14 12 20 20 C 1.50703 * 109.46928 * 209.99941 * 10 9 7 21 21 C 1.34514 * 125.79074 * 145.00208 * 20 10 9 22 22 C 1.41380 * 106.84031 * 180.02562 * 21 20 10 23 23 C 1.34511 * 106.84419 * 359.97438 * 22 21 20 24 24 O 1.34308 * 125.78671 * 324.68991 * 20 10 9 25 25 H 1.09003 * 109.47018 * 300.00220 * 1 2 3 26 26 H 1.08999 * 109.46633 * 59.99750 * 1 2 3 27 27 H 1.08997 * 109.47303 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47279 * 239.99721 * 2 1 3 29 29 H 1.08999 * 109.46550 * 299.99921 * 3 2 1 30 30 H 1.08994 * 109.47147 * 59.99640 * 3 2 1 31 31 H 1.08993 * 109.47315 * 179.97438 * 3 2 1 32 32 H 0.97002 * 119.99998 * 180.02562 * 15 14 12 33 33 H 1.08000 * 126.57648 * 0.02667 * 21 20 10 34 34 H 1.08000 * 126.57920 * 179.97438 * 22 21 20 35 35 H 1.08000 * 125.79136 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1263 -0.6443 1.2953 6 9 1.4821 -0.1314 2.3886 7 6 1.6413 -2.1732 1.1890 8 8 0.5184 -2.4785 0.8634 9 8 2.5336 -3.1276 1.4969 10 6 2.0801 -4.5046 1.4164 11 1 1.0129 -4.5490 1.6336 12 6 2.3330 -5.0365 0.0293 13 1 1.5079 -5.3843 -0.5745 14 6 3.6180 -5.0792 -0.4690 15 7 3.8386 -5.5429 -1.6798 16 14 5.0451 -4.4772 0.5750 17 1 5.5837 -5.6061 1.3755 18 1 6.1130 -3.9424 -0.3075 19 1 4.5733 -3.4044 1.4870 20 6 2.8322 -5.3405 2.4198 21 6 2.3315 -6.3811 3.1097 22 6 3.3745 -6.8682 3.9306 23 6 4.4503 -6.0966 3.6928 24 8 4.1177 -5.1766 2.7725 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1300 1.4425 0.0005 32 1 4.7426 -5.5733 -2.0302 33 1 1.3258 -6.7698 3.0484 34 1 3.3182 -7.7002 4.6169 35 1 5.4187 -6.2020 4.1591 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520425633.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:01 Heat of formation + Delta-G solvation = -130.755386 kcal Electronic energy + Delta-G solvation = -21641.911810 eV Core-core repulsion = 18135.214611 eV Total energy + Delta-G solvation = -3506.697199 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.09312 -43.56356 -41.30865 -37.96697 -36.21189 -35.12580 -33.98056 -32.46177 -29.44343 -28.52063 -28.05427 -25.00266 -23.14945 -22.44916 -21.50881 -21.16157 -19.67798 -19.01538 -18.69218 -17.70907 -17.69821 -17.21439 -16.79364 -16.41394 -15.83586 -15.56619 -15.05778 -14.84231 -14.40885 -14.09231 -14.00789 -13.83411 -13.54963 -13.42988 -13.18677 -13.12208 -12.93552 -12.68636 -12.30118 -12.12520 -11.92026 -11.77753 -11.57782 -11.28778 -11.04911 -10.76533 -10.55964 -9.33370 -8.55957 -6.75906 0.76925 1.05159 1.25571 1.36528 1.49042 1.71078 1.84956 2.29507 2.43739 2.86102 3.24108 3.48853 3.59536 3.74540 4.12644 4.17369 4.21560 4.27244 4.37539 4.45172 4.52716 4.79840 4.90211 4.95870 4.97907 5.02730 5.07700 5.11431 5.24320 5.31491 5.34766 5.65255 5.71962 5.95749 6.24344 6.34290 6.72426 7.02533 8.55020 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.021059 B = 0.007330 C = 0.006583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.247215 B = 3818.892696 C = 4252.374219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.115 4.115 3 C -0.139 4.139 4 C 0.113 3.887 5 H 0.133 0.867 6 F -0.187 7.187 7 C 0.429 3.571 8 O -0.512 6.512 9 O -0.356 6.356 10 C 0.259 3.741 11 H 0.084 0.916 12 C -0.551 4.551 13 H 0.048 0.952 14 C 0.043 3.957 15 N -0.911 5.911 16 Si 0.946 3.054 17 H -0.265 1.265 18 H -0.296 1.296 19 H -0.211 1.211 20 C -0.013 4.013 21 C -0.221 4.221 22 C -0.204 4.204 23 C -0.071 4.071 24 O -0.186 6.186 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.276 0.724 33 H 0.156 0.844 34 H 0.182 0.818 35 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.595 8.844 9.067 12.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.134 4.134 3 C -0.196 4.196 4 C 0.076 3.924 5 H 0.151 0.849 6 F -0.168 7.168 7 C 0.271 3.729 8 O -0.401 6.401 9 O -0.273 6.273 10 C 0.206 3.794 11 H 0.102 0.898 12 C -0.586 4.586 13 H 0.066 0.934 14 C -0.161 4.161 15 N -0.547 5.547 16 Si 0.776 3.224 17 H -0.192 1.192 18 H -0.225 1.225 19 H -0.136 1.136 20 C -0.062 4.062 21 C -0.240 4.240 22 C -0.222 4.222 23 C -0.137 4.137 24 O -0.085 6.085 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.173 0.827 34 H 0.199 0.801 35 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 1.524 8.885 8.746 12.560 hybrid contribution 0.170 -0.641 -0.098 0.670 sum 1.694 8.244 8.648 12.067 Atomic orbital electron populations 1.22069 0.93715 1.03597 1.02596 1.21701 0.98346 0.98681 0.94651 1.21810 1.01947 0.92164 1.03666 1.21490 1.01438 0.84066 0.85430 0.84946 1.92838 1.87851 1.83792 1.52318 1.24626 0.83788 0.90669 0.73814 1.90500 1.22517 1.84051 1.43074 1.86935 1.43402 1.18758 1.78248 1.18933 0.94210 0.74917 0.91306 0.89776 1.21135 0.94637 1.44279 0.98578 0.93387 1.25956 1.02025 0.92248 0.95840 1.70023 1.23246 1.43739 1.17683 0.85658 0.77538 0.81642 0.77595 1.19227 1.22496 1.13615 1.22695 0.83041 1.01316 0.99191 1.21674 1.02446 0.98899 1.00972 1.22074 0.92295 1.03749 1.04100 1.24828 1.02573 0.92390 0.93865 1.84363 1.26497 1.50135 1.47515 0.92168 0.90682 0.92033 0.89556 0.90077 0.91525 0.90948 0.91514 0.82656 0.80103 0.74939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.67 8.71 71.98 0.63 -4.05 16 2 C -0.11 -3.16 2.75 -10.79 -0.03 -3.19 16 3 C -0.14 -2.70 9.11 71.98 0.66 -2.04 16 4 C 0.11 3.58 3.51 29.85 0.10 3.69 16 5 H 0.13 3.57 8.14 -2.38 -0.02 3.55 16 6 F -0.19 -5.89 16.03 44.97 0.72 -5.17 16 7 C 0.43 18.09 7.26 71.23 0.52 18.60 16 8 O -0.51 -23.77 13.02 21.95 0.29 -23.48 16 9 O -0.36 -16.58 6.69 -48.76 -0.33 -16.90 16 10 C 0.26 12.87 2.55 29.10 0.07 12.95 16 11 H 0.08 4.16 7.16 -2.39 -0.02 4.14 16 12 C -0.55 -32.01 9.51 25.60 0.24 -31.77 16 13 H 0.05 3.10 8.06 -2.91 -0.02 3.07 16 14 C 0.04 2.51 5.45 84.66 0.46 2.97 16 15 N -0.91 -55.49 13.96 21.45 0.30 -55.19 16 16 Si 0.95 45.30 22.92 68.60 1.57 46.88 16 17 H -0.26 -12.20 6.01 99.48 0.60 -11.60 16 18 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 19 H -0.21 -9.61 4.92 99.48 0.49 -9.12 16 20 C -0.01 -0.58 5.34 24.83 0.13 -0.45 16 21 C -0.22 -8.55 10.81 22.19 0.24 -8.31 16 22 C -0.20 -6.43 10.91 22.19 0.24 -6.18 16 23 C -0.07 -2.33 11.73 66.97 0.79 -1.54 16 24 O -0.19 -7.91 4.85 0.75 0.00 -7.90 16 25 H 0.06 1.64 7.69 -2.39 -0.02 1.62 16 26 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.06 2.21 5.26 -2.39 -0.01 2.20 16 28 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.24 7.93 -2.39 -0.02 1.22 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 33 H 0.16 5.44 8.06 -2.91 -0.02 5.41 16 34 H 0.18 4.14 8.06 -2.91 -0.02 4.12 16 35 H 0.23 5.19 8.06 -2.91 -0.02 5.16 16 Total: -1.00 -70.22 292.42 7.38 -62.85 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.77 Total: 18.23 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: 4.05 Total: -19.31 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.30 Total: -55.19 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -0.04 Total: -48.29 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 0.72 Total: -5.17 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.57 Total: 46.88 kcal Total: -70.22 7.38 -62.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520425633.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.906 kcal (2) G-P(sol) polarization free energy of solvation -70.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds