Wall clock time and date at job start Mon Mar 30 2020 01:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46685 * 2 1 4 4 C 1.50702 * 109.47026 * 119.99834 * 2 1 3 5 5 H 1.07995 * 120.00040 * 120.00106 * 4 2 1 6 6 C 1.37875 * 119.99757 * 300.00018 * 4 2 1 7 7 N 1.31518 * 119.99838 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00397 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.46894 * 89.99785 * 8 6 4 10 10 H 1.48497 * 109.47445 * 210.00126 * 8 6 4 11 11 H 1.48504 * 109.47109 * 330.00326 * 8 6 4 12 12 C 1.50701 * 109.47227 * 239.99958 * 2 1 3 13 13 O 1.20832 * 119.99560 * 240.00018 * 12 2 1 14 14 O 1.34262 * 119.99996 * 59.99462 * 12 2 1 15 15 C 1.35834 * 116.99847 * 185.60292 * 14 12 2 16 16 C 1.36675 * 120.22948 * 263.09849 * 15 14 12 17 17 C 1.39186 * 120.92127 * 179.97438 * 16 15 14 18 18 C 1.36180 * 121.06086 * 0.06526 * 17 16 15 19 19 C 1.40515 * 119.77022 * 359.95613 * 18 17 16 20 20 C 1.40558 * 121.28169 * 180.02562 * 19 18 17 21 21 C 1.36105 * 119.65191 * 179.97438 * 20 19 18 22 22 C 1.39366 * 120.97971 * 0.03599 * 21 20 19 23 23 C 1.36137 * 120.97617 * 359.97438 * 22 21 20 24 24 C 1.40423 * 119.66053 * 359.97438 * 23 22 21 25 25 H 1.09005 * 109.46995 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47073 * 300.00161 * 1 2 3 27 27 H 1.08996 * 109.47208 * 60.00734 * 1 2 3 28 28 H 0.97001 * 119.99832 * 180.02562 * 7 6 4 29 29 H 1.07998 * 119.53349 * 359.97438 * 16 15 14 30 30 H 1.07999 * 119.46982 * 180.02562 * 17 16 15 31 31 H 1.08004 * 120.11264 * 180.23566 * 18 17 16 32 32 H 1.08004 * 120.17577 * 359.95124 * 20 19 18 33 33 H 1.07999 * 119.50999 * 180.02562 * 21 20 19 34 34 H 1.07997 * 119.51221 * 180.02562 * 22 21 20 35 35 H 1.07996 * 120.16968 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 2.1380 -0.8589 3.5566 8 14 0.6247 1.2791 2.6541 9 1 -0.8029 0.8726 2.6997 10 1 0.9758 1.9952 3.9067 11 1 0.8469 2.1765 1.4919 12 6 2.0324 -0.7104 -1.2305 13 8 2.7271 -1.6928 -1.1195 14 8 1.7080 -0.2518 -2.4499 15 6 2.0942 -1.0026 -3.5140 16 6 3.2434 -0.6998 -4.1889 17 6 3.6529 -1.4596 -5.2808 18 6 2.9212 -2.5252 -5.7093 19 6 1.7331 -2.8692 -5.0426 20 6 0.9537 -3.9628 -5.4575 21 6 -0.1911 -4.2667 -4.7871 22 6 -0.6046 -3.5085 -3.6932 23 6 0.1249 -2.4424 -3.2636 24 6 1.3125 -2.0993 -3.9298 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.9033 -0.5277 4.4376 29 1 3.8420 0.1409 -3.8706 30 1 4.5654 -1.1996 -5.7968 31 1 3.2554 -3.1066 -6.5560 32 1 1.2615 -4.5587 -6.3041 33 1 -0.7880 -5.1077 -5.1076 34 1 -1.5169 -3.7710 -3.1783 35 1 -0.2075 -1.8641 -2.4143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521866016.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:24 Heat of formation + Delta-G solvation = -29.784160 kcal Electronic energy + Delta-G solvation = -20086.290000 eV Core-core repulsion = 17014.740467 eV Total energy + Delta-G solvation = -3071.549533 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.12853 -39.45233 -36.81989 -35.90082 -34.07488 -32.07430 -31.36356 -30.32893 -28.86746 -25.27455 -24.51530 -23.21303 -23.03790 -21.63792 -19.96917 -17.81632 -17.48325 -17.00227 -16.49862 -16.06743 -15.79004 -15.13442 -14.69864 -14.21008 -13.95583 -13.61528 -13.49683 -13.03469 -12.97359 -12.70801 -12.36607 -12.11262 -11.80669 -11.42596 -11.30690 -11.12273 -10.98040 -10.74587 -10.53187 -10.35505 -9.85411 -9.74603 -9.37398 -9.24870 -8.70066 -8.62181 -7.76639 -6.17587 -4.21288 0.48668 1.01769 1.97110 2.90885 2.97481 3.18022 3.26840 3.31019 3.47685 4.17975 4.27764 4.65857 4.80349 4.85421 5.00643 5.11071 5.11569 5.24471 5.38227 5.40983 5.53482 5.81979 5.92635 6.05125 6.06260 6.13966 6.21448 6.23042 6.34604 6.38596 6.52848 6.60849 6.63110 6.76520 6.94264 6.99447 7.18107 7.39541 8.33533 8.63352 8.97263 9.38251 10.94528 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.027080 B = 0.005369 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.731577 B = 5214.094385 C = 5653.992382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.030 3.970 3 H 0.067 0.933 4 C -0.521 4.521 5 H 0.095 0.905 6 C 0.077 3.923 7 N -0.889 5.889 8 Si 0.882 3.118 9 H -0.275 1.275 10 H -0.292 1.292 11 H -0.264 1.264 12 C 0.469 3.531 13 O -0.479 6.479 14 O -0.308 6.308 15 C 0.114 3.886 16 C -0.127 4.127 17 C -0.100 4.100 18 C -0.115 4.115 19 C -0.040 4.040 20 C -0.113 4.113 21 C -0.111 4.111 22 C -0.119 4.119 23 C -0.091 4.091 24 C -0.060 4.060 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.268 0.732 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.616 -1.607 -18.422 18.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.010 3.990 3 H 0.084 0.916 4 C -0.558 4.558 5 H 0.113 0.887 6 C -0.126 4.126 7 N -0.525 5.525 8 Si 0.711 3.289 9 H -0.201 1.201 10 H -0.219 1.219 11 H -0.189 1.189 12 C 0.313 3.687 13 O -0.360 6.360 14 O -0.225 6.225 15 C 0.072 3.928 16 C -0.145 4.145 17 C -0.118 4.118 18 C -0.133 4.133 19 C -0.040 4.040 20 C -0.130 4.130 21 C -0.129 4.129 22 C -0.137 4.137 23 C -0.109 4.109 24 C -0.060 4.060 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.356 -1.941 -18.160 18.569 hybrid contribution -0.507 0.732 0.299 0.939 sum -3.862 -1.209 -17.861 18.314 Atomic orbital electron populations 1.22150 0.96289 1.01858 1.00364 1.19180 0.93987 0.97805 0.88014 0.91562 1.20884 1.33296 1.14664 0.86988 0.88705 1.24898 0.95592 0.96609 0.95482 1.69863 1.44724 1.39972 0.97983 0.86944 0.80791 0.83643 0.77528 1.20138 1.21939 1.18872 1.25074 0.77281 0.83656 0.82709 1.90597 1.34147 1.25706 1.85599 1.84709 1.73570 1.49806 1.14416 1.18325 0.93830 0.91852 0.88772 1.20956 0.94922 1.01218 0.97411 1.20653 0.99759 0.95184 0.96173 1.21004 0.94375 0.97870 1.00052 1.17937 0.95561 0.95605 0.94919 1.20960 0.95200 0.96570 1.00314 1.20865 0.96763 0.99518 0.95795 1.20852 1.00318 0.95453 0.97113 1.21051 0.93603 0.97281 0.99000 1.18220 0.96107 0.95039 0.96649 0.92274 0.92657 0.93515 0.92224 0.85153 0.85353 0.85310 0.85461 0.85924 0.85723 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.60 37.16 0.32 -2.77 16 2 C 0.03 0.70 2.33 -92.92 -0.22 0.48 16 3 H 0.07 1.51 7.20 -51.93 -0.37 1.14 16 4 C -0.52 -14.76 8.96 -34.44 -0.31 -15.07 16 5 H 0.10 3.05 7.00 -52.49 -0.37 2.68 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -26.81 13.96 55.43 0.77 -26.03 16 8 Si 0.88 20.75 24.37 -169.99 -4.14 16.61 16 9 H -0.27 -6.22 6.87 56.52 0.39 -5.83 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.26 -5.81 6.53 56.52 0.37 -5.44 16 12 C 0.47 10.71 6.62 36.01 0.24 10.94 16 13 O -0.48 -12.37 15.21 -18.75 -0.29 -12.66 16 14 O -0.31 -6.09 9.26 -23.33 -0.22 -6.30 16 15 C 0.11 2.07 4.92 -39.12 -0.19 1.87 16 16 C -0.13 -1.96 9.88 -39.79 -0.39 -2.36 16 17 C -0.10 -1.25 9.94 -39.97 -0.40 -1.65 16 18 C -0.12 -1.41 9.77 -39.46 -0.39 -1.80 16 19 C -0.04 -0.58 5.74 -106.84 -0.61 -1.19 16 20 C -0.11 -1.35 9.77 -39.47 -0.39 -1.73 16 21 C -0.11 -1.30 9.95 -39.93 -0.40 -1.70 16 22 C -0.12 -1.61 9.95 -39.92 -0.40 -2.00 16 23 C -0.09 -1.50 9.38 -39.51 -0.37 -1.87 16 24 C -0.06 -1.02 5.75 -106.73 -0.61 -1.64 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.05 1.17 3.27 -51.93 -0.17 1.00 16 27 H 0.05 0.81 8.11 -51.93 -0.42 0.39 16 28 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 29 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 30 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 31 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.13 2.17 7.32 -52.49 -0.38 1.79 16 LS Contribution 298.00 15.07 4.49 4.49 Total: -1.00 -32.52 298.00 -7.45 -39.96 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -3.86 Total: 2.32 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -4.21 Total: -18.39 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.77 Total: -26.03 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.50 Total: -18.96 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.14 Total: 16.61 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.52 -7.45 -39.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521866016.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.179 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds