Wall clock time and date at job start Mon Mar 30 2020 01:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46685 * 2 1 4 4 C 1.50702 * 109.47026 * 119.99834 * 2 1 3 5 5 H 1.07995 * 120.00040 * 120.00106 * 4 2 1 6 6 C 1.37875 * 119.99757 * 300.00018 * 4 2 1 7 7 N 1.31518 * 119.99838 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00397 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.46894 * 89.99785 * 8 6 4 10 10 H 1.48497 * 109.47445 * 210.00126 * 8 6 4 11 11 H 1.48504 * 109.47109 * 330.00326 * 8 6 4 12 12 C 1.50701 * 109.47227 * 239.99958 * 2 1 3 13 13 O 1.20832 * 119.99560 * 240.00018 * 12 2 1 14 14 O 1.34262 * 119.99996 * 59.99462 * 12 2 1 15 15 C 1.35834 * 116.99847 * 185.60292 * 14 12 2 16 16 C 1.36675 * 120.22948 * 263.09849 * 15 14 12 17 17 C 1.39186 * 120.92127 * 179.97438 * 16 15 14 18 18 C 1.36180 * 121.06086 * 0.06526 * 17 16 15 19 19 C 1.40515 * 119.77022 * 359.95613 * 18 17 16 20 20 C 1.40558 * 121.28169 * 180.02562 * 19 18 17 21 21 C 1.36105 * 119.65191 * 179.97438 * 20 19 18 22 22 C 1.39366 * 120.97971 * 0.03599 * 21 20 19 23 23 C 1.36137 * 120.97617 * 359.97438 * 22 21 20 24 24 C 1.40423 * 119.66053 * 359.97438 * 23 22 21 25 25 H 1.09005 * 109.46995 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47073 * 300.00161 * 1 2 3 27 27 H 1.08996 * 109.47208 * 60.00734 * 1 2 3 28 28 H 0.97001 * 119.99832 * 180.02562 * 7 6 4 29 29 H 1.07998 * 119.53349 * 359.97438 * 16 15 14 30 30 H 1.07999 * 119.46982 * 180.02562 * 17 16 15 31 31 H 1.08004 * 120.11264 * 180.23566 * 18 17 16 32 32 H 1.08004 * 120.17577 * 359.95124 * 20 19 18 33 33 H 1.07999 * 119.50999 * 180.02562 * 21 20 19 34 34 H 1.07997 * 119.51221 * 180.02562 * 22 21 20 35 35 H 1.07996 * 120.16968 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 2.1380 -0.8589 3.5566 8 14 0.6247 1.2791 2.6541 9 1 -0.8029 0.8726 2.6997 10 1 0.9758 1.9952 3.9067 11 1 0.8469 2.1765 1.4919 12 6 2.0324 -0.7104 -1.2305 13 8 2.7271 -1.6928 -1.1195 14 8 1.7080 -0.2518 -2.4499 15 6 2.0942 -1.0026 -3.5140 16 6 3.2434 -0.6998 -4.1889 17 6 3.6529 -1.4596 -5.2808 18 6 2.9212 -2.5252 -5.7093 19 6 1.7331 -2.8692 -5.0426 20 6 0.9537 -3.9628 -5.4575 21 6 -0.1911 -4.2667 -4.7871 22 6 -0.6046 -3.5085 -3.6932 23 6 0.1249 -2.4424 -3.2636 24 6 1.3125 -2.0993 -3.9298 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.9033 -0.5277 4.4376 29 1 3.8420 0.1409 -3.8706 30 1 4.5654 -1.1996 -5.7968 31 1 3.2554 -3.1066 -6.5560 32 1 1.2615 -4.5587 -6.3041 33 1 -0.7880 -5.1077 -5.1076 34 1 -1.5169 -3.7710 -3.1783 35 1 -0.2075 -1.8641 -2.4143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521866016.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:24 Heat of formation + Delta-G solvation = -48.821244 kcal Electronic energy + Delta-G solvation = -20087.115510 eV Core-core repulsion = 17014.740467 eV Total energy + Delta-G solvation = -3072.375043 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.53686 -40.75317 -38.32004 -37.10109 -36.04834 -33.59357 -33.01914 -31.36838 -29.97930 -27.26266 -26.14368 -24.38522 -24.09513 -23.05148 -21.52026 -19.26406 -18.79103 -18.67507 -18.02211 -17.70533 -17.10462 -16.49130 -16.41419 -15.43952 -15.24151 -14.96311 -14.83292 -14.52599 -14.37012 -14.17420 -13.78044 -13.62964 -13.09892 -13.02058 -12.70898 -12.66585 -12.38014 -12.26164 -12.02793 -11.67882 -11.56407 -11.39013 -11.30395 -10.84667 -10.78999 -9.67526 -8.85960 -8.35929 -6.47401 -0.61425 -0.03788 0.83059 1.18968 1.32345 1.37833 1.48824 1.76474 2.14672 2.28115 2.96638 3.08139 3.64493 3.67140 3.84211 3.96214 4.04492 4.22799 4.26764 4.33447 4.38115 4.43861 4.48055 4.56146 4.77003 4.86817 4.88915 5.02763 5.11105 5.21444 5.26057 5.31259 5.36937 5.44221 5.51465 5.55533 5.82478 6.00201 6.16710 6.63991 6.91997 7.17591 8.80805 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.027080 B = 0.005369 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.731577 B = 5214.094385 C = 5653.992382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.024 3.976 3 H 0.082 0.918 4 C -0.535 4.535 5 H 0.036 0.964 6 C 0.019 3.981 7 N -0.942 5.942 8 Si 0.952 3.048 9 H -0.255 1.255 10 H -0.292 1.292 11 H -0.234 1.234 12 C 0.476 3.524 13 O -0.523 6.523 14 O -0.297 6.297 15 C 0.053 3.947 16 C -0.125 4.125 17 C -0.111 4.111 18 C -0.094 4.094 19 C -0.065 4.065 20 C -0.101 4.101 21 C -0.118 4.118 22 C -0.111 4.111 23 C -0.138 4.138 24 C -0.081 4.081 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.272 0.728 29 H 0.135 0.865 30 H 0.167 0.833 31 H 0.175 0.825 32 H 0.170 0.830 33 H 0.161 0.839 34 H 0.143 0.857 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 -1.399 -21.723 22.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.005 3.995 3 H 0.100 0.900 4 C -0.572 4.572 5 H 0.054 0.946 6 C -0.179 4.179 7 N -0.580 5.580 8 Si 0.776 3.224 9 H -0.180 1.180 10 H -0.219 1.219 11 H -0.157 1.157 12 C 0.322 3.678 13 O -0.408 6.408 14 O -0.213 6.213 15 C 0.012 3.988 16 C -0.143 4.143 17 C -0.129 4.129 18 C -0.112 4.112 19 C -0.065 4.065 20 C -0.118 4.118 21 C -0.135 4.135 22 C -0.129 4.129 23 C -0.156 4.156 24 C -0.082 4.082 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.153 0.847 30 H 0.184 0.816 31 H 0.192 0.808 32 H 0.187 0.813 33 H 0.179 0.821 34 H 0.161 0.839 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.562 -1.719 -21.506 22.052 hybrid contribution -0.051 0.489 1.162 1.261 sum -4.614 -1.230 -20.344 20.897 Atomic orbital electron populations 1.22051 0.93547 1.02197 1.02110 1.19115 0.96098 0.97678 0.86632 0.90034 1.20939 1.33021 1.13504 0.89774 0.94593 1.25891 0.97016 1.00486 0.94491 1.70032 1.46707 1.42448 0.98851 0.85812 0.79160 0.79024 0.78423 1.18012 1.21931 1.15695 1.24853 0.76294 0.82729 0.83960 1.90561 1.36174 1.27568 1.86546 1.84649 1.73109 1.49663 1.13897 1.18758 0.96480 0.94284 0.89253 1.21304 0.93743 1.01401 0.97888 1.21069 1.01273 0.95010 0.95525 1.21573 0.92613 0.97051 0.99918 1.18402 0.97087 0.96405 0.94654 1.21478 0.94289 0.95326 1.00729 1.21306 0.97262 1.00122 0.94832 1.21217 1.00251 0.94116 0.97312 1.21061 0.95154 0.99461 0.99919 1.18484 0.96356 0.95324 0.98003 0.92875 0.92390 0.89969 0.91885 0.84724 0.81552 0.80806 0.81274 0.82114 0.83884 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.77 8.60 71.98 0.62 -5.16 16 2 C 0.02 1.16 2.33 -12.28 -0.03 1.13 16 3 H 0.08 3.68 7.20 -2.39 -0.02 3.66 16 4 C -0.53 -31.96 8.96 25.60 0.23 -31.73 16 5 H 0.04 2.51 7.00 -2.91 -0.02 2.49 16 6 C 0.02 1.13 5.45 84.65 0.46 1.59 16 7 N -0.94 -59.36 13.96 21.45 0.30 -59.06 16 8 Si 0.95 42.48 24.37 68.60 1.67 44.15 16 9 H -0.25 -10.55 6.87 99.48 0.68 -9.86 16 10 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.23 -9.26 6.53 99.48 0.65 -8.61 16 12 C 0.48 22.85 6.62 71.24 0.47 23.32 16 13 O -0.52 -29.03 15.21 21.94 0.33 -28.70 16 14 O -0.30 -12.23 9.26 5.56 0.05 -12.18 16 15 C 0.05 1.99 4.92 22.57 0.11 2.10 16 16 C -0.13 -3.86 9.88 22.13 0.22 -3.64 16 17 C -0.11 -2.52 9.94 22.02 0.22 -2.30 16 18 C -0.09 -1.97 9.77 22.35 0.22 -1.76 16 19 C -0.07 -1.75 5.74 -21.30 -0.12 -1.87 16 20 C -0.10 -2.02 9.77 22.34 0.22 -1.81 16 21 C -0.12 -2.38 9.95 22.04 0.22 -2.16 16 22 C -0.11 -2.89 9.95 22.05 0.22 -2.67 16 23 C -0.14 -4.67 9.38 22.31 0.21 -4.46 16 24 C -0.08 -2.82 5.75 -21.23 -0.12 -2.94 16 25 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 26 H 0.06 2.32 3.27 -2.39 -0.01 2.31 16 27 H 0.08 2.74 8.11 -2.39 -0.02 2.72 16 28 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 29 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 30 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 31 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 34 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 35 H 0.11 3.89 7.32 -2.91 -0.02 3.86 16 Total: -1.00 -78.09 298.00 6.52 -71.57 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 1.02 Total: 16.56 kcal Atomic # 6 Polarization: -35.49 SS G_CDS: 3.14 Total: -32.35 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: 0.30 Total: -59.06 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: 0.39 Total: -40.87 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.67 Total: 44.15 kcal Total: -78.09 6.52 -71.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521866016.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.747 kcal (2) G-P(sol) polarization free energy of solvation -78.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds