Wall clock time and date at job start Mon Mar 30 2020 01:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00368 * 2 1 4 4 H 1.48497 * 109.47230 * 240.00326 * 3 2 1 5 5 H 1.48502 * 109.47140 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47057 * 120.00038 * 3 2 1 7 7 C 1.37881 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00086 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99713 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.47412 * 59.99796 * 9 7 2 11 11 O 1.45196 * 109.47379 * 180.02562 * 9 7 2 12 12 C 1.34228 * 117.00460 * 210.00329 * 11 9 7 13 13 O 1.20825 * 119.99860 * 359.97438 * 12 11 9 14 14 C 1.50698 * 120.00447 * 179.97438 * 12 11 9 15 15 H 1.09009 * 109.57358 * 29.73430 * 14 12 11 16 16 C 1.53093 * 109.57777 * 149.99713 * 14 12 11 17 17 C 1.52583 * 109.95606 * 182.83408 * 16 14 12 18 18 C 1.52584 * 110.72435 * 289.32450 * 17 16 14 19 19 C 1.53100 * 109.95638 * 70.67719 * 18 17 16 20 20 S 1.81747 * 109.57342 * 269.35608 * 14 12 11 21 21 C 1.53003 * 109.47204 * 300.00155 * 9 7 2 22 22 C 1.53001 * 117.51964 * 111.28411 * 21 9 7 23 23 C 1.52999 * 60.00190 * 107.47982 * 22 21 9 24 24 H 0.97005 * 119.99628 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.38895 * 302.97776 * 16 14 12 26 26 H 1.08998 * 109.39073 * 62.68686 * 16 14 12 27 27 H 1.08998 * 109.22895 * 49.64210 * 17 16 14 28 28 H 1.09000 * 109.23083 * 169.00273 * 17 16 14 29 29 H 1.09002 * 109.39057 * 190.81923 * 18 17 16 30 30 H 1.08996 * 109.39243 * 310.52827 * 18 17 16 31 31 H 1.08996 * 109.57752 * 56.78003 * 19 18 17 32 32 H 1.09002 * 109.57445 * 177.04212 * 19 18 17 33 33 H 1.09002 * 115.54973 * 325.58194 * 21 9 7 34 34 H 1.09001 * 117.49733 * 214.97413 * 22 21 9 35 35 H 1.08995 * 117.49577 * 359.97438 * 22 21 9 36 36 H 1.09004 * 117.50150 * 252.51496 * 23 22 21 37 37 H 1.09004 * 117.49681 * 107.48417 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6239 -2.5567 -0.8903 11 8 2.1944 -3.6028 -0.0005 12 6 1.8031 -4.7391 -0.5986 13 8 0.7083 -4.8092 -1.1049 14 6 2.7292 -5.9272 -0.6385 15 1 3.3769 -5.9150 0.2382 16 6 1.9069 -7.2184 -0.6509 17 6 2.8364 -8.4281 -0.6204 18 6 3.5730 -8.5767 -1.9484 19 6 4.6068 -7.4577 -2.1005 20 16 3.7403 -5.8606 -2.1473 21 6 0.3718 -2.5804 1.2490 22 6 -1.1441 -2.5135 1.0524 23 6 -0.4799 -3.8382 1.4330 24 1 -0.4850 0.8401 0.0004 25 1 1.2551 -7.2408 0.2225 26 1 1.2992 -7.2518 -1.5552 27 1 3.5639 -8.3017 0.1813 28 1 2.2494 -9.3273 -0.4331 29 1 4.0782 -9.5421 -1.9760 30 1 2.8565 -8.5212 -2.7679 31 1 5.2926 -7.4764 -1.2536 32 1 5.1651 -7.5996 -3.0259 33 1 0.7840 -2.1162 2.1450 34 1 -1.7290 -2.0052 1.8190 35 1 -1.5153 -2.4111 0.0328 36 1 -0.4140 -4.6075 0.6637 37 1 -0.6278 -4.2014 2.4501 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526986312.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:08 Heat of formation + Delta-G solvation = -91.206504 kcal Electronic energy + Delta-G solvation = -19130.142493 eV Core-core repulsion = 16191.373438 eV Total energy + Delta-G solvation = -2938.769055 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.54599 -38.57941 -37.49184 -36.74520 -34.73576 -32.90199 -30.07671 -28.68156 -25.61353 -24.59859 -23.10003 -22.20854 -21.63690 -21.12832 -19.14147 -18.43487 -18.31614 -17.25307 -16.93002 -16.53835 -15.93691 -15.59163 -15.19839 -14.74661 -14.72546 -14.43431 -14.09112 -13.80085 -13.53952 -13.22404 -13.01613 -12.79706 -12.58749 -12.42005 -12.29082 -12.19470 -11.90376 -11.82961 -11.72960 -11.41792 -11.21748 -10.96448 -10.70770 -10.63750 -10.45953 -8.83249 -8.23346 -6.40641 0.12958 1.39029 1.41562 1.44419 1.51723 1.62368 1.88725 2.40650 3.03783 3.17495 3.45470 3.71438 3.88132 3.90182 4.04822 4.09243 4.13367 4.28052 4.40408 4.40665 4.61179 4.65929 4.72986 4.77658 4.91222 5.00858 5.07851 5.09080 5.13501 5.22387 5.35067 5.36744 5.45695 5.52332 5.80723 6.08930 6.60338 6.90566 7.28682 8.82830 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.025845 B = 0.005488 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.135134 B = 5101.131832 C = 5925.337039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.028 3.972 3 Si 0.974 3.026 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.559 4.559 8 H 0.061 0.939 9 C 0.256 3.744 10 H 0.005 0.995 11 O -0.357 6.357 12 C 0.469 3.531 13 O -0.529 6.529 14 C -0.042 4.042 15 H 0.130 0.870 16 C -0.105 4.105 17 C -0.121 4.121 18 C -0.121 4.121 19 C -0.069 4.069 20 S -0.284 6.284 21 C -0.134 4.134 22 C -0.122 4.122 23 C -0.198 4.198 24 H 0.268 0.732 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.126 0.874 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.950 -17.079 0.410 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.175 4.175 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.597 4.597 8 H 0.079 0.921 9 C 0.203 3.797 10 H 0.022 0.978 11 O -0.274 6.274 12 C 0.311 3.689 13 O -0.420 6.420 14 C -0.171 4.171 15 H 0.148 0.852 16 C -0.144 4.144 17 C -0.158 4.158 18 C -0.160 4.160 19 C -0.216 4.216 20 S -0.058 6.058 21 C -0.153 4.153 22 C -0.159 4.159 23 C -0.235 4.235 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.144 0.856 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.536 -16.110 -0.489 17.393 hybrid contribution -0.165 0.581 0.670 0.902 sum 6.371 -15.530 0.181 16.787 Atomic orbital electron populations 1.70148 1.06970 1.28085 1.47741 1.25700 0.95967 1.02218 0.93586 0.85380 0.78251 0.77551 0.79071 1.19786 1.20062 1.19046 1.21134 0.93713 0.89781 1.55052 0.92088 1.19878 0.86077 0.81063 0.92722 0.97763 1.86484 1.48930 1.22407 1.69531 1.23259 0.86451 0.84707 0.74486 1.90553 1.23831 1.83439 1.44202 1.22977 0.98779 0.93959 1.01381 0.85222 1.21706 0.98004 0.90667 1.04013 1.21547 0.98723 0.97023 0.98541 1.21771 0.97549 0.98716 0.97965 1.23740 0.99633 0.90340 1.07918 1.87618 1.55174 1.30920 1.32070 1.22402 0.93358 1.00287 0.99257 1.22277 0.94659 0.98336 1.00653 1.23275 1.06184 0.91639 1.02386 0.92294 0.90289 0.91102 0.90180 0.88371 0.87229 0.91337 0.87804 0.85586 0.90041 0.89040 0.91792 0.89650 0.87502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.01 11.43 21.45 0.25 -50.77 16 2 C 0.03 1.54 5.30 84.66 0.45 1.99 16 3 Si 0.97 43.80 29.54 68.60 2.03 45.83 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.56 -32.71 8.88 25.60 0.23 -32.48 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.26 14.31 2.25 29.85 0.07 14.38 16 10 H 0.00 0.29 6.92 -2.38 -0.02 0.28 16 11 O -0.36 -18.02 9.84 -51.40 -0.51 -18.53 16 12 C 0.47 20.46 6.26 71.24 0.45 20.91 16 13 O -0.53 -25.68 13.28 21.97 0.29 -25.38 16 14 C -0.04 -1.31 3.02 29.88 0.09 -1.22 16 15 H 0.13 3.58 8.14 -2.38 -0.02 3.56 16 16 C -0.10 -2.57 4.59 30.49 0.14 -2.43 16 17 C -0.12 -1.82 5.61 30.32 0.17 -1.65 16 18 C -0.12 -1.63 5.75 30.49 0.18 -1.46 16 19 C -0.07 -1.14 6.46 72.02 0.46 -0.67 16 20 S -0.28 -8.55 21.68 -56.49 -1.22 -9.78 16 21 C -0.13 -6.78 4.47 -10.79 -0.05 -6.83 16 22 C -0.12 -5.75 9.04 30.59 0.28 -5.47 16 23 C -0.20 -8.46 9.80 30.60 0.30 -8.16 16 24 H 0.27 14.41 8.31 -92.70 -0.77 13.64 16 25 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 26 H 0.07 1.99 7.87 -2.39 -0.02 1.97 16 27 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 28 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 1.10 8.06 -2.39 -0.02 1.08 16 31 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.08 4.21 8.11 -2.39 -0.02 4.19 16 34 H 0.09 3.94 8.14 -2.39 -0.02 3.92 16 35 H 0.06 3.31 8.05 -2.39 -0.02 3.30 16 36 H 0.09 3.81 5.37 -2.39 -0.01 3.80 16 37 H 0.11 3.82 8.14 -2.38 -0.02 3.80 16 Total: -1.00 -68.83 312.24 4.64 -64.20 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 1.05 Total: 17.54 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 2.76 Total: -23.11 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.25 Total: -50.77 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -0.21 Total: -43.91 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.22 Total: -9.78 kcal Total: -68.83 4.64 -64.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526986312.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.010 kcal (2) G-P(sol) polarization free energy of solvation -68.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds