Wall clock time and date at job start Mon Mar 30 2020 01:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86809 * 120.00091 * 2 1 4 4 H 1.48496 * 109.47101 * 269.41124 * 3 2 1 5 5 H 1.48498 * 109.46800 * 29.41100 * 3 2 1 6 6 H 1.48501 * 109.47070 * 149.40845 * 3 2 1 7 7 C 1.40270 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99731 * 354.30134 * 7 2 1 9 9 C 1.40888 * 120.00256 * 174.29924 * 7 2 1 10 10 C 1.40711 * 120.32784 * 321.58771 * 9 7 2 11 11 C 1.37594 * 119.87832 * 180.29411 * 10 9 7 12 12 C 1.38827 * 120.57458 * 359.68383 * 11 10 9 13 13 C 1.38221 * 120.67476 * 359.97438 * 12 11 10 14 14 C 1.39227 * 120.09036 * 0.02562 * 13 12 11 15 15 C 1.47437 * 120.28161 * 180.02562 * 14 13 12 16 16 O 1.21611 * 120.00011 * 175.08509 * 15 14 13 17 17 N 1.34771 * 120.00191 * 355.08084 * 15 14 13 18 18 C 1.46503 * 120.00491 * 180.02562 * 17 15 14 19 19 C 1.50696 * 109.47145 * 179.97438 * 18 17 15 20 20 C 1.34852 * 125.89350 * 264.68541 * 19 18 17 21 21 C 1.40887 * 107.41950 * 179.89147 * 20 19 18 22 22 C 1.34853 * 107.41314 * 0.37889 * 21 20 19 23 23 N 1.36339 * 125.88749 * 85.00691 * 19 18 17 24 24 H 0.96996 * 125.63778 * 359.94665 * 23 19 18 25 25 H 0.97007 * 119.99623 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.05716 * 359.97438 * 10 9 7 27 27 H 1.07997 * 119.71580 * 179.69656 * 11 10 9 28 28 H 1.08001 * 119.66905 * 180.02562 * 12 11 10 29 29 H 1.08005 * 119.95596 * 180.02562 * 13 12 11 30 30 H 0.97003 * 119.99719 * 359.97438 * 17 15 14 31 31 H 1.08999 * 109.46703 * 300.00382 * 18 17 15 32 32 H 1.09002 * 109.46396 * 59.99824 * 18 17 15 33 33 H 1.08005 * 126.28846 * 0.03266 * 20 19 18 34 34 H 1.07997 * 126.29414 * 180.13393 * 21 20 19 35 35 H 1.07999 * 125.88916 * 179.73028 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.5003 2.0393 -1.4000 5 1 1.4316 2.6562 0.6875 6 1 3.5316 1.4438 0.7125 7 6 2.0077 -1.2147 -0.0005 8 1 1.4717 -2.1478 0.0919 9 6 3.4113 -1.2177 -0.1217 10 6 4.0523 -0.3058 -0.9806 11 6 5.4232 -0.3209 -1.0965 12 6 6.1836 -1.2251 -0.3674 13 6 5.5788 -2.1263 0.4884 14 6 4.1935 -2.1355 0.6271 15 6 3.5440 -3.0947 1.5392 16 8 2.3434 -3.0400 1.7246 17 7 4.2808 -4.0322 2.1673 18 6 3.6354 -4.9857 3.0732 19 6 4.6724 -5.9203 3.6406 20 6 4.9848 -7.1406 3.1593 21 6 6.0008 -7.6701 3.9794 22 6 6.2646 -6.7565 4.9356 23 7 5.4522 -5.6805 4.7330 24 1 5.4327 -4.8769 5.2759 25 1 -0.4850 0.8401 0.0004 26 1 3.4688 0.4011 -1.5517 27 1 5.9121 0.3769 -1.7602 28 1 7.2588 -1.2238 -0.4693 29 1 6.1817 -2.8244 1.0503 30 1 5.2384 -4.0761 2.0190 31 1 3.1505 -4.4440 3.8853 32 1 2.8899 -5.5609 2.5240 33 1 4.5398 -7.6225 2.3013 34 1 6.4776 -8.6324 3.8657 35 1 6.9931 -6.8598 5.7261 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001544773467.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:12 Heat of formation + Delta-G solvation = 32.331567 kcal Electronic energy + Delta-G solvation = -19551.312558 eV Core-core repulsion = 16514.749316 eV Total energy + Delta-G solvation = -3036.563242 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.13930 -38.99414 -37.03352 -34.29474 -33.50432 -30.95588 -30.73188 -30.46894 -29.14651 -25.76433 -24.79781 -22.30057 -21.03695 -20.62324 -20.21446 -19.54050 -17.98746 -17.40278 -16.42012 -15.46420 -15.16390 -14.57517 -14.14849 -14.09746 -13.99705 -13.64046 -13.44674 -13.18873 -12.74238 -12.45233 -12.38171 -12.25818 -11.96011 -11.67215 -11.44983 -10.95199 -10.73493 -10.47215 -10.11063 -9.79899 -9.27654 -8.90921 -8.66784 -8.44817 -8.08925 -7.83835 -7.59885 -6.87937 -4.47197 2.08232 2.12425 2.58211 2.93840 3.08583 3.17256 3.26635 3.27957 3.95054 3.99430 4.09757 4.59758 4.86694 5.08717 5.33757 5.42910 5.44280 5.72964 5.78384 5.81084 5.96215 6.07346 6.16842 6.30869 6.36853 6.48409 6.77745 6.93933 7.03378 7.08165 7.09939 7.21423 7.36783 7.51477 7.56298 7.72884 7.99195 8.29551 8.47610 8.61541 8.82781 9.31051 10.10305 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.026152 B = 0.004855 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.393275 B = 5766.103367 C = 6460.229845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.079 3.921 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.243 1.243 7 C -0.397 4.397 8 H 0.115 0.885 9 C 0.118 3.882 10 C -0.225 4.225 11 C -0.066 4.066 12 C -0.252 4.252 13 C -0.043 4.043 14 C -0.246 4.246 15 C 0.560 3.440 16 O -0.524 6.524 17 N -0.746 5.746 18 C 0.193 3.807 19 C 0.003 3.997 20 C -0.179 4.179 21 C -0.205 4.205 22 C -0.013 4.013 23 N -0.553 5.553 24 H 0.414 0.586 25 H 0.286 0.714 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.393 0.607 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.807 -7.291 6.767 14.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.217 1.217 6 H -0.167 1.167 7 C -0.424 4.424 8 H 0.133 0.867 9 C 0.113 3.887 10 C -0.244 4.244 11 C -0.084 4.084 12 C -0.271 4.271 13 C -0.061 4.061 14 C -0.251 4.251 15 C 0.353 3.647 16 O -0.401 6.401 17 N -0.402 5.402 18 C 0.069 3.931 19 C -0.110 4.110 20 C -0.205 4.205 21 C -0.229 4.229 22 C -0.144 4.144 23 N -0.148 5.148 24 H 0.250 0.750 25 H 0.097 0.903 26 H 0.123 0.877 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.227 0.773 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.584 -7.027 7.004 13.795 hybrid contribution 0.893 1.012 0.201 1.365 sum 10.477 -6.016 7.205 14.067 Atomic orbital electron populations 1.69548 1.08105 1.30223 1.34235 1.26300 0.94906 1.01445 0.91451 0.86392 0.80959 0.79793 0.79379 1.19416 1.21723 1.16667 1.19945 0.90059 0.96072 1.36318 0.86744 1.17559 0.93455 0.89357 0.88281 1.21190 0.94295 1.04959 1.03990 1.20744 0.93894 0.96707 0.97077 1.20302 0.97745 1.02947 1.06129 1.20792 0.93440 0.96060 0.95852 1.19450 0.92453 1.07045 1.06167 1.18386 0.86548 0.80036 0.79730 1.90779 1.14247 1.71517 1.63552 1.46143 1.11455 1.34048 1.48597 1.19499 0.91617 0.89024 0.92978 1.20456 0.99916 0.98065 0.92522 1.20804 1.01742 0.95309 1.02632 1.20912 1.02710 1.00699 0.98621 1.21839 1.00150 0.89031 1.03428 1.42035 1.31073 1.17010 1.24651 0.74971 0.90304 0.87656 0.88511 0.88500 0.88735 0.77254 0.91566 0.89759 0.84583 0.84798 0.82030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.84 13.92 55.56 0.77 -21.07 16 2 C 0.08 2.11 5.51 -17.30 -0.10 2.02 16 3 Si 0.91 20.83 24.48 -169.99 -4.16 16.67 16 4 H -0.27 -5.83 6.70 56.52 0.38 -5.45 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.24 -5.71 6.67 56.52 0.38 -5.33 16 7 C -0.40 -11.14 8.08 -37.82 -0.31 -11.45 16 8 H 0.11 3.55 6.37 -52.49 -0.33 3.22 16 9 C 0.12 3.04 5.04 -106.54 -0.54 2.50 16 10 C -0.23 -5.31 6.93 -38.88 -0.27 -5.58 16 11 C -0.07 -1.36 10.01 -39.60 -0.40 -1.75 16 12 C -0.25 -4.93 10.03 -39.37 -0.39 -5.33 16 13 C -0.04 -0.85 9.52 -39.22 -0.37 -1.22 16 14 C -0.25 -5.76 5.92 -104.36 -0.62 -6.38 16 15 C 0.56 12.65 7.72 -12.52 -0.10 12.55 16 16 O -0.52 -13.87 13.68 5.27 0.07 -13.80 16 17 N -0.75 -12.88 5.50 -62.56 -0.34 -13.22 16 18 C 0.19 2.92 6.21 -5.19 -0.03 2.88 16 19 C 0.00 0.04 6.53 -81.79 -0.53 -0.49 16 20 C -0.18 -2.27 10.76 -39.78 -0.43 -2.69 16 21 C -0.20 -2.26 10.86 -39.78 -0.43 -2.70 16 22 C -0.01 -0.12 11.94 -16.75 -0.20 -0.32 16 23 N -0.55 -5.82 6.07 -9.12 -0.06 -5.87 16 24 H 0.41 3.50 8.96 -40.82 -0.37 3.14 16 25 H 0.29 7.05 8.29 -40.82 -0.34 6.71 16 26 H 0.11 2.44 4.88 -52.49 -0.26 2.19 16 27 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 28 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 29 H 0.09 1.56 6.43 -52.48 -0.34 1.22 16 30 H 0.39 6.02 6.52 -40.82 -0.27 5.75 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.14 1.63 8.06 -52.48 -0.42 1.21 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 297.22 15.07 4.48 4.48 Total: -1.00 -31.09 297.22 -7.65 -38.74 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -3.70 Total: 12.03 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -4.71 Total: -17.96 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.37 Total: -40.17 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: 0.07 Total: -13.80 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.16 Total: 16.67 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.09 -7.65 -38.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544773467.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.072 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds