Wall clock time and date at job start Mon Mar 30 2020 00:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 110.57650 * 2 1 4 4 O 1.46049 * 110.56567 * 237.12470 * 2 1 3 5 5 C 1.33769 * 109.50983 * 241.32029 * 4 2 1 6 6 O 1.21515 * 123.07404 * 180.10129 * 5 4 2 7 7 N 1.34009 * 113.85511 * 0.07745 * 5 4 2 8 8 C 1.47087 * 108.88062 * 0.02562 * 7 5 4 9 9 H 1.08999 * 110.56349 * 241.27352 * 8 7 5 10 10 C 1.50708 * 110.56372 * 118.57225 * 8 7 5 11 11 O 1.21275 * 120.00138 * 343.44272 * 10 8 7 12 12 N 1.34774 * 119.99563 * 163.43728 * 10 8 7 13 13 C 1.47582 * 134.48840 * 179.97438 * 12 10 8 14 14 C 1.53945 * 86.11723 * 155.36573 * 13 12 10 15 15 O 1.42902 * 113.73722 * 269.15307 * 14 13 12 16 16 C 1.50694 * 113.74220 * 137.95305 * 14 13 12 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 14 13 18 18 C 1.37885 * 119.99902 * 179.97438 * 16 14 13 19 19 N 1.31516 * 119.99913 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 119.99854 * 179.72538 * 18 16 14 21 21 H 1.48498 * 109.47200 * 59.99994 * 20 18 16 22 22 H 1.48498 * 109.46671 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47156 * 300.00008 * 20 18 16 24 24 C 1.47581 * 134.49815 * 0.02562 * 12 10 8 25 25 H 1.09000 * 109.47069 * 297.29174 * 1 2 3 26 26 H 1.09004 * 109.47464 * 57.28889 * 1 2 3 27 27 H 1.09001 * 109.47031 * 177.29093 * 1 2 3 28 28 H 0.97001 * 125.55122 * 180.02562 * 7 5 4 29 29 H 1.08999 * 113.77094 * 41.05869 * 13 12 10 30 30 H 1.09002 * 113.76672 * 269.66815 * 13 12 10 31 31 H 0.96703 * 113.99717 * 178.07290 * 15 14 13 32 32 H 0.97001 * 119.99646 * 180.02562 * 19 18 16 33 33 H 1.09004 * 113.76846 * 90.33339 * 24 12 10 34 34 H 1.09000 * 113.76699 * 318.93862 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9130 1.0204 0.0000 4 8 2.0430 -0.7423 -1.1484 5 6 2.7665 -1.7830 -0.7207 6 8 3.3110 -2.5662 -1.4735 7 7 2.8364 -1.8826 0.6138 8 6 2.0697 -0.7802 1.2142 9 1 2.7193 -0.1464 1.8179 10 6 0.9340 -1.3171 2.0468 11 8 0.5740 -2.4672 1.9116 12 7 0.3186 -0.5190 2.9416 13 6 -0.7926 -0.6994 3.8959 14 6 -0.1587 0.4564 4.6912 15 8 0.7834 0.0279 5.6766 16 6 -1.1613 1.4452 5.2277 17 1 -2.2150 1.3027 5.0383 18 6 -0.7334 2.5321 5.9605 19 7 0.5497 2.7059 6.1907 20 14 -1.9757 3.7620 6.6190 21 1 -2.9253 3.0690 7.5263 22 1 -1.2656 4.8296 7.3682 23 1 -2.7235 4.3648 5.4865 24 6 0.4844 0.8866 3.3599 25 1 -0.3633 0.4712 0.9133 26 1 -0.3634 0.5554 -0.8647 27 1 -0.3633 -1.0265 -0.0486 28 1 3.3146 -2.5697 1.1038 29 1 -0.7719 -1.6557 4.4186 30 1 -1.7717 -0.4616 3.4802 31 1 1.2056 0.7524 6.1582 32 1 0.8506 3.4703 6.7066 33 1 -0.1202 1.5897 2.7870 34 1 1.5250 1.1969 3.4545 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567757774.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:34 Heat of formation + Delta-G solvation = -135.300571 kcal Electronic energy + Delta-G solvation = -21538.843900 eV Core-core repulsion = 18051.869569 eV Total energy + Delta-G solvation = -3486.974331 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.07546 -41.08847 -39.19556 -38.41908 -35.84611 -35.79342 -34.07980 -33.30925 -30.49190 -28.22822 -26.97748 -26.75798 -24.20285 -23.48920 -21.81957 -20.08782 -19.43367 -19.28667 -18.39513 -17.86020 -17.50196 -17.07078 -16.86959 -16.28830 -15.97490 -15.77112 -15.54361 -15.12415 -14.63408 -14.28518 -14.13480 -14.02166 -13.62023 -13.35216 -13.17243 -12.80414 -12.73701 -12.66034 -12.23178 -12.15239 -12.08176 -11.98789 -11.60483 -11.17408 -10.66294 -10.48305 -10.15977 -9.59425 -8.22944 -6.38320 1.25832 1.37390 1.51401 1.54862 1.56023 1.60793 1.80841 2.39378 2.45293 2.92831 2.99815 3.12951 3.62846 3.68904 3.83645 4.07091 4.14571 4.22891 4.47312 4.60166 4.65769 4.67532 4.83055 4.92216 4.98306 5.07981 5.30392 5.56911 5.78202 5.98234 6.00650 6.66848 6.75612 6.81174 6.99823 7.35435 7.52831 8.82293 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.036850 B = 0.004855 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.664590 B = 5765.516813 C = 5939.883933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.087 3.913 3 H 0.176 0.824 4 O -0.330 6.330 5 C 0.651 3.349 6 O -0.566 6.566 7 N -0.701 5.701 8 C 0.085 3.915 9 H 0.157 0.843 10 C 0.524 3.476 11 O -0.586 6.586 12 N -0.622 5.622 13 C 0.111 3.889 14 C 0.217 3.783 15 O -0.589 6.589 16 C -0.554 4.554 17 H 0.071 0.929 18 C 0.040 3.960 19 N -0.914 5.914 20 Si 0.960 3.040 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.266 1.266 24 C 0.088 3.912 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.042 0.958 28 H 0.443 0.557 29 H 0.055 0.945 30 H 0.107 0.893 31 H 0.389 0.611 32 H 0.275 0.725 33 H 0.108 0.892 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.345 3.328 -6.237 7.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.032 3.968 3 H 0.193 0.807 4 O -0.240 6.240 5 C 0.404 3.596 6 O -0.455 6.455 7 N -0.372 5.372 8 C -0.024 4.024 9 H 0.174 0.826 10 C 0.313 3.687 11 O -0.467 6.467 12 N -0.355 5.355 13 C -0.011 4.011 14 C 0.175 3.825 15 O -0.402 6.402 16 C -0.592 4.592 17 H 0.089 0.911 18 C -0.162 4.162 19 N -0.554 5.554 20 Si 0.786 3.214 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.191 1.191 24 C -0.034 4.034 25 H 0.114 0.886 26 H 0.122 0.878 27 H 0.061 0.939 28 H 0.287 0.713 29 H 0.073 0.927 30 H 0.124 0.876 31 H 0.244 0.756 32 H 0.085 0.915 33 H 0.126 0.874 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.356 1.961 -7.282 7.663 hybrid contribution -0.210 0.482 1.222 1.331 sum 1.146 2.442 -6.060 6.634 Atomic orbital electron populations 1.22332 0.91660 1.03100 1.05873 1.24290 0.96994 0.97417 0.78099 0.80681 1.87338 1.63340 1.38977 1.34332 1.18465 0.77847 0.80542 0.82704 1.91024 1.51390 1.43881 1.59180 1.45657 1.53865 1.32292 1.05387 1.22566 0.93499 0.89690 0.96681 0.82576 1.20424 0.83939 0.85296 0.79072 1.90697 1.67473 1.19592 1.68934 1.50157 1.34412 1.14492 1.36402 1.23527 0.91070 0.99394 0.87105 1.20122 0.87111 0.89879 0.85350 1.86056 1.59847 1.39818 1.54441 1.21697 0.94280 1.07844 1.35379 0.91066 1.25606 0.96915 0.98841 0.94796 1.69344 1.14617 1.31227 1.40244 0.85570 0.78987 0.78231 0.78604 1.20628 1.21169 1.19064 1.24322 1.02336 0.80685 0.96032 0.88565 0.87834 0.93859 0.71262 0.92668 0.87562 0.75572 0.91471 0.87401 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.67 8.47 71.98 0.61 -3.06 16 2 C 0.09 1.76 4.52 30.96 0.14 1.90 16 3 H 0.18 2.01 8.14 -2.39 -0.02 1.99 16 4 O -0.33 -9.08 10.81 -47.29 -0.51 -9.59 16 5 C 0.65 20.60 9.16 129.91 1.19 21.79 16 6 O -0.57 -22.03 18.04 19.64 0.35 -21.67 16 7 N -0.70 -18.70 5.64 -573.42 -3.23 -21.93 16 8 C 0.09 2.03 3.91 44.50 0.17 2.20 16 9 H 0.16 2.80 8.14 -2.39 -0.02 2.78 16 10 C 0.52 17.03 5.28 87.66 0.46 17.49 16 11 O -0.59 -23.89 17.18 -3.01 -0.05 -23.94 16 12 N -0.62 -20.44 2.75 -840.20 -2.31 -22.75 16 13 C 0.11 4.12 8.22 86.48 0.71 4.83 16 14 C 0.22 8.83 1.44 -10.87 -0.02 8.81 16 15 O -0.59 -27.10 13.48 -148.98 -2.01 -29.11 16 16 C -0.55 -24.29 8.62 25.60 0.22 -24.06 16 17 H 0.07 3.05 7.81 -2.91 -0.02 3.03 16 18 C 0.04 1.74 5.40 84.66 0.46 2.19 16 19 N -0.91 -41.15 11.09 21.45 0.24 -40.92 16 20 Si 0.96 35.83 29.54 68.60 2.03 37.85 16 21 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.29 -10.69 7.11 99.48 0.71 -9.98 16 23 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 24 C 0.09 2.82 7.40 86.49 0.64 3.46 16 25 H 0.10 2.04 5.71 -2.39 -0.01 2.02 16 26 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 27 H 0.04 1.19 7.46 -2.39 -0.02 1.17 16 28 H 0.44 10.85 8.96 -92.71 -0.83 10.02 16 29 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.11 3.51 8.09 -2.39 -0.02 3.49 16 31 H 0.39 18.24 6.46 -74.06 -0.48 17.77 16 32 H 0.28 11.94 8.31 -92.71 -0.77 11.17 16 33 H 0.11 3.06 7.62 -2.38 -0.02 3.04 16 34 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -61.47 293.41 -1.06 -62.53 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: -0.15 Total: 33.97 kcal Atomic # 6 Polarization: 30.97 SS G_CDS: 4.59 Total: 35.56 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -5.31 Total: -85.60 kcal Atomic # 8 Polarization: -82.09 SS G_CDS: -2.22 Total: -84.31 kcal Atomic # 14 Polarization: 35.83 SS G_CDS: 2.03 Total: 37.85 kcal Total: -61.47 -1.06 -62.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567757774.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.774 kcal (2) G-P(sol) polarization free energy of solvation -61.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds