Wall clock time and date at job start Mon Mar 30 2020 00:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.57462 * 2 1 4 4 O 1.46043 * 110.63670 * 237.15312 * 2 1 3 5 5 C 1.33760 * 109.51514 * 241.52545 * 4 2 1 6 6 O 1.21512 * 123.07676 * 179.88336 * 5 4 2 7 7 N 1.34007 * 113.85670 * 359.92291 * 5 4 2 8 8 C 1.47087 * 108.88169 * 359.97438 * 7 5 4 9 9 H 1.09003 * 110.56386 * 118.71847 * 8 7 5 10 10 C 1.50700 * 110.56951 * 241.43377 * 8 7 5 11 11 O 1.21279 * 119.99887 * 16.55109 * 10 8 7 12 12 N 1.34779 * 120.00040 * 196.56113 * 10 8 7 13 13 C 1.47066 * 136.05579 * 180.02562 * 12 10 8 14 14 C 1.53504 * 88.04678 * 207.05024 * 13 12 10 15 15 O 1.42902 * 114.20451 * 87.54970 * 14 13 12 16 16 C 1.50703 * 114.20523 * 220.37340 * 14 13 12 17 17 H 1.08004 * 119.99655 * 0.02562 * 16 14 13 18 18 C 1.37874 * 119.99845 * 180.02562 * 16 14 13 19 19 N 1.31519 * 119.99837 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99979 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47329 * 89.99413 * 20 18 16 22 22 H 1.48498 * 109.46745 * 209.99500 * 20 18 16 23 23 H 1.48496 * 109.46982 * 329.99520 * 20 18 16 24 24 C 1.47064 * 136.05760 * 359.93929 * 12 10 8 25 25 H 1.09000 * 109.46877 * 297.29620 * 1 2 3 26 26 H 1.08998 * 109.47237 * 57.29765 * 1 2 3 27 27 H 1.09001 * 109.47366 * 177.30039 * 1 2 3 28 28 H 0.97001 * 125.56127 * 179.97438 * 7 5 4 29 29 H 1.09002 * 113.46793 * 321.85996 * 13 12 10 30 30 H 1.08999 * 113.46805 * 92.24363 * 13 12 10 31 31 H 0.96697 * 113.99512 * 180.02562 * 15 14 13 32 32 H 0.97004 * 119.99468 * 180.02562 * 19 18 16 33 33 H 1.08999 * 113.47096 * 267.69948 * 24 12 10 34 34 H 1.09005 * 113.46966 * 38.08340 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9130 1.0205 0.0000 4 8 2.0447 -0.7413 -1.1482 5 6 2.7647 -1.7843 -0.7204 6 8 3.3064 -2.5695 -1.4731 7 7 2.8333 -1.8846 0.6141 8 6 2.0706 -0.7794 1.2144 9 1 1.2489 -1.1649 1.8180 10 6 2.9722 0.0953 2.0469 11 8 4.1756 0.0281 1.9118 12 7 2.4413 0.9521 2.9416 13 6 2.9613 1.9350 3.9040 14 6 1.6937 1.7090 4.7398 15 8 1.7914 0.6307 5.6725 16 6 1.1144 2.9660 5.3361 17 1 1.5919 3.9181 5.1574 18 6 -0.0250 2.9004 6.1097 19 7 -0.6065 1.7409 6.3268 20 14 -0.7434 4.4586 6.8482 21 1 -1.7207 5.0509 5.8999 22 1 -1.4281 4.1312 8.1246 23 1 0.3475 5.4322 7.1071 24 6 1.0869 1.3165 3.3840 25 1 -0.3633 0.4713 0.9132 26 1 -0.3633 0.5552 -0.8647 27 1 -0.3634 -1.0265 -0.0484 28 1 3.3085 -2.5737 1.1043 29 1 3.8743 1.6118 4.4041 30 1 3.0383 2.9429 3.4963 31 1 0.9912 0.4908 6.1971 32 1 -1.4084 1.6949 6.8707 33 1 0.6642 2.1601 2.8382 34 1 0.4056 0.4675 3.4409 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567757775.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:35 Heat of formation + Delta-G solvation = -136.635356 kcal Electronic energy + Delta-G solvation = -21350.106730 eV Core-core repulsion = 17863.074518 eV Total energy + Delta-G solvation = -3487.032212 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.04987 -41.17577 -39.25888 -38.49176 -35.91958 -35.84289 -34.08546 -33.21755 -30.79248 -28.32814 -26.85910 -26.59516 -24.09341 -23.46563 -22.08515 -20.34343 -19.39613 -19.05795 -18.54270 -18.05306 -17.50856 -17.05545 -16.69445 -16.20900 -16.04178 -15.79006 -15.70964 -15.06246 -14.58528 -14.46069 -14.20713 -13.98460 -13.65938 -13.36737 -13.06020 -12.79519 -12.76581 -12.69841 -12.21992 -12.14064 -12.07148 -11.97057 -11.65988 -11.16826 -10.71110 -10.49506 -10.18023 -9.65527 -8.24934 -6.40455 1.21718 1.30105 1.50100 1.50544 1.56130 1.62918 1.78822 2.36301 2.44430 2.89611 2.97279 3.15322 3.51318 3.71484 3.82292 3.99218 4.15019 4.19776 4.43834 4.64788 4.74899 4.80058 4.81242 4.89027 4.97166 5.20016 5.28338 5.54729 5.77136 5.94411 5.97796 6.65037 6.74117 6.78039 6.94317 7.33604 7.53154 8.80910 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.034643 B = 0.004830 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.041517 B = 5795.145394 C = 6131.664766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.084 3.916 3 H 0.123 0.877 4 O -0.330 6.330 5 C 0.652 3.348 6 O -0.564 6.564 7 N -0.701 5.701 8 C 0.093 3.907 9 H 0.154 0.846 10 C 0.522 3.478 11 O -0.584 6.584 12 N -0.625 5.625 13 C 0.105 3.895 14 C 0.217 3.783 15 O -0.587 6.587 16 C -0.550 4.550 17 H 0.074 0.926 18 C 0.039 3.961 19 N -0.914 5.914 20 Si 0.963 3.037 21 H -0.269 1.269 22 H -0.288 1.288 23 H -0.274 1.274 24 C 0.083 3.917 25 H 0.105 0.895 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.444 0.556 29 H 0.050 0.950 30 H 0.108 0.892 31 H 0.391 0.609 32 H 0.276 0.724 33 H 0.109 0.891 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.618 -0.309 -6.228 7.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.029 3.971 3 H 0.141 0.859 4 O -0.240 6.240 5 C 0.405 3.595 6 O -0.452 6.452 7 N -0.372 5.372 8 C -0.017 4.017 9 H 0.171 0.829 10 C 0.310 3.690 11 O -0.466 6.466 12 N -0.357 5.357 13 C -0.017 4.017 14 C 0.175 3.825 15 O -0.401 6.401 16 C -0.588 4.588 17 H 0.092 0.908 18 C -0.162 4.162 19 N -0.555 5.555 20 Si 0.789 3.211 21 H -0.195 1.195 22 H -0.214 1.214 23 H -0.199 1.199 24 C -0.039 4.039 25 H 0.124 0.876 26 H 0.113 0.887 27 H 0.097 0.903 28 H 0.288 0.712 29 H 0.069 0.931 30 H 0.126 0.874 31 H 0.247 0.753 32 H 0.086 0.914 33 H 0.126 0.874 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.345 -0.830 -7.320 8.091 hybrid contribution -0.311 0.350 1.231 1.317 sum -3.656 -0.480 -6.089 7.119 Atomic orbital electron populations 1.22211 0.87792 1.05172 1.06077 1.24154 0.98934 0.95851 0.78199 0.85937 1.87334 1.63813 1.38581 1.34286 1.18458 0.77792 0.80579 0.82673 1.91025 1.50984 1.44114 1.59126 1.45660 1.55979 1.30146 1.05411 1.22464 0.94719 0.88030 0.96469 0.82858 1.20474 0.88340 0.80889 0.79299 1.90701 1.16758 1.70148 1.68952 1.49721 1.12841 1.36908 1.36236 1.23442 0.98797 0.92303 0.87191 1.19832 0.90804 0.86040 0.85787 1.86041 1.45079 1.53508 1.55450 1.21633 1.10596 0.93658 1.32921 0.90824 1.25635 0.96212 0.99279 0.95099 1.69296 1.21280 1.25384 1.39547 0.85463 0.78357 0.79480 0.77786 1.19461 1.21358 1.19873 1.24230 0.83453 1.00116 0.96113 0.87602 0.88659 0.90291 0.71182 0.93094 0.87373 0.75336 0.91358 0.87356 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.46 71.98 0.68 -1.51 16 2 C 0.08 1.80 4.15 30.96 0.13 1.93 16 3 H 0.12 2.54 7.72 -2.39 -0.02 2.53 16 4 O -0.33 -9.31 10.81 -47.21 -0.51 -9.82 16 5 C 0.65 20.84 9.16 129.91 1.19 22.03 16 6 O -0.56 -22.00 18.04 19.65 0.35 -21.64 16 7 N -0.70 -19.04 5.64 -573.42 -3.23 -22.27 16 8 C 0.09 2.29 3.64 44.50 0.16 2.45 16 9 H 0.15 2.99 7.73 -2.39 -0.02 2.97 16 10 C 0.52 17.51 7.19 87.66 0.63 18.14 16 11 O -0.58 -24.42 17.36 -3.03 -0.05 -24.47 16 12 N -0.62 -21.24 3.69 -857.99 -3.17 -24.41 16 13 C 0.11 3.97 8.03 83.18 0.67 4.63 16 14 C 0.22 8.96 1.59 -11.16 -0.02 8.94 16 15 O -0.59 -27.34 13.54 -148.98 -2.02 -29.36 16 16 C -0.55 -24.19 8.69 25.60 0.22 -23.96 16 17 H 0.07 3.16 7.81 -2.91 -0.02 3.13 16 18 C 0.04 1.70 5.40 84.65 0.46 2.16 16 19 N -0.91 -41.22 11.01 21.45 0.24 -40.98 16 20 Si 0.96 35.69 29.54 68.60 2.03 37.72 16 21 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 22 H -0.29 -10.81 7.11 99.48 0.71 -10.11 16 23 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 24 C 0.08 2.71 7.84 83.23 0.65 3.36 16 25 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.44 11.01 8.96 -92.71 -0.83 10.18 16 29 H 0.05 2.07 8.14 -2.39 -0.02 2.06 16 30 H 0.11 3.62 8.10 -2.39 -0.02 3.60 16 31 H 0.39 18.51 6.33 -74.06 -0.47 18.04 16 32 H 0.28 11.91 8.31 -92.71 -0.77 11.14 16 33 H 0.11 3.11 8.10 -2.39 -0.02 3.09 16 34 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 Total: -1.00 -61.33 299.88 -1.74 -63.07 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: -0.14 Total: 33.99 kcal Atomic # 6 Polarization: 33.40 SS G_CDS: 4.77 Total: 38.18 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -6.17 Total: -87.66 kcal Atomic # 8 Polarization: -83.06 SS G_CDS: -2.23 Total: -85.29 kcal Atomic # 14 Polarization: 35.69 SS G_CDS: 2.03 Total: 37.72 kcal Total: -61.33 -1.74 -63.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567757775.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.570 kcal (2) G-P(sol) polarization free energy of solvation -61.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds