Wall clock time and date at job start Mon Mar 30 2020 00:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.57304 * 2 1 4 4 O 1.45701 * 110.52300 * 122.70596 * 2 1 3 5 5 C 1.33774 * 109.47604 * 118.63129 * 4 2 1 6 6 O 1.21507 * 123.06878 * 180.02562 * 5 4 2 7 7 N 1.33999 * 113.85705 * 0.02562 * 5 4 2 8 8 C 1.47095 * 108.88297 * 359.97438 * 7 5 4 9 9 H 1.09000 * 110.56456 * 118.71832 * 8 7 5 10 10 C 1.50700 * 110.56602 * 241.42559 * 8 7 5 11 11 O 1.21278 * 119.99654 * 18.54889 * 10 8 7 12 12 N 1.34774 * 119.99993 * 198.54443 * 10 8 7 13 13 C 1.47586 * 134.48934 * 180.02562 * 12 10 8 14 14 C 1.53949 * 86.11504 * 155.36070 * 13 12 10 15 15 O 1.42903 * 113.74102 * 269.15490 * 14 13 12 16 16 C 1.50694 * 113.74088 * 137.95266 * 14 13 12 17 17 H 1.08000 * 120.00563 * 1.92388 * 16 14 13 18 18 C 1.37885 * 119.99902 * 181.92552 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.47807 * 134.45633 * 359.87247 * 12 10 8 25 25 H 1.09002 * 109.46612 * 182.70669 * 1 2 3 26 26 H 1.09000 * 109.46884 * 302.70715 * 1 2 3 27 27 H 1.09000 * 109.46926 * 62.70851 * 1 2 3 28 28 H 0.97006 * 125.55781 * 179.97438 * 7 5 4 29 29 H 1.08993 * 113.76952 * 41.05857 * 13 12 10 30 30 H 1.08993 * 113.76905 * 269.65828 * 13 12 10 31 31 H 0.96700 * 113.99800 * 178.07503 * 15 14 13 32 32 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 33 33 H 1.08995 * 113.77163 * 90.38050 * 24 12 10 34 34 H 1.09005 * 113.83876 * 318.91036 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9131 1.0205 0.0000 4 8 2.0408 -0.7373 1.1482 5 6 2.7632 -1.7800 0.7233 6 8 3.3050 -2.5629 1.4782 7 7 2.8346 -1.8821 -0.6109 8 6 2.0705 -0.7795 -1.2143 9 1 2.7219 -0.1479 -1.8183 10 6 0.9351 -1.3160 -2.0474 11 8 0.5492 -2.4543 -1.8853 12 7 0.3484 -0.5309 -2.9725 13 6 -0.7534 -0.7152 -3.9369 14 6 -0.9221 0.8139 -3.8767 15 8 -1.8442 1.2520 -2.8767 16 6 -1.1663 1.4507 -5.2205 17 1 -1.2395 0.8349 -6.1047 18 6 -1.2963 2.8197 -5.3212 19 7 -1.2077 3.5696 -4.2444 20 14 -1.5982 3.6091 -6.9870 21 1 -1.7006 5.0818 -6.8256 22 1 -0.4710 3.2878 -7.8987 23 1 -2.8638 3.0854 -7.5609 24 6 0.5490 0.8615 -3.4261 25 1 -0.3632 -1.0266 0.0485 26 1 -0.3633 0.5553 0.8647 27 1 -0.3633 0.4712 -0.9133 28 1 3.3123 -2.5709 -1.0992 29 1 -1.6024 -1.2670 -3.5338 30 1 -0.4286 -1.0833 -4.9100 31 1 -1.9310 2.2132 -2.8159 32 1 -1.2987 4.5327 -4.3154 33 1 1.2575 0.9578 -4.2488 34 1 0.7376 1.5659 -2.6159 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567757776.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:38 Heat of formation + Delta-G solvation = -113.067809 kcal Electronic energy + Delta-G solvation = -21677.016018 eV Core-core repulsion = 18191.005771 eV Total energy + Delta-G solvation = -3486.010246 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.87395 -39.64165 -37.71143 -37.07485 -34.59287 -34.16199 -32.37163 -32.09184 -29.01933 -26.88046 -25.51488 -25.23453 -22.99974 -22.28312 -20.30579 -18.66274 -18.25818 -17.66924 -16.99917 -16.61446 -16.14304 -15.57199 -15.29402 -14.97724 -14.60029 -14.46023 -14.06906 -13.70452 -13.29113 -12.98370 -12.70509 -12.51359 -12.15876 -11.90471 -11.66796 -11.53197 -11.26759 -11.15076 -10.81459 -10.67719 -10.66627 -10.45642 -10.20517 -9.61001 -9.19096 -8.90290 -8.62715 -8.10428 -6.53619 -4.63864 2.50625 2.69257 2.78106 3.07483 3.10052 3.14494 3.18069 3.58004 4.04584 4.08079 4.39513 4.63672 4.71401 4.86534 5.08403 5.24024 5.38475 5.72279 5.77751 5.87176 5.95868 6.14159 6.23749 6.34630 6.36117 6.44884 6.70459 6.90990 7.21695 7.49294 7.65564 8.05765 8.14216 8.37923 8.39649 9.07585 9.24409 10.53197 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.039520 B = 0.004961 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.339667 B = 5642.862846 C = 5838.444134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.086 3.914 3 H 0.127 0.873 4 O -0.323 6.323 5 C 0.652 3.348 6 O -0.528 6.528 7 N -0.710 5.710 8 C 0.081 3.919 9 H 0.121 0.879 10 C 0.525 3.475 11 O -0.545 6.545 12 N -0.629 5.629 13 C 0.114 3.886 14 C 0.242 3.758 15 O -0.571 6.571 16 C -0.540 4.540 17 H 0.071 0.929 18 C 0.075 3.925 19 N -0.898 5.898 20 Si 0.907 3.093 21 H -0.284 1.284 22 H -0.274 1.274 23 H -0.273 1.273 24 C 0.071 3.929 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.109 0.891 28 H 0.437 0.563 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.393 0.607 32 H 0.275 0.725 33 H 0.087 0.913 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.113 -0.271 1.480 5.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.030 3.970 3 H 0.144 0.856 4 O -0.233 6.233 5 C 0.405 3.595 6 O -0.413 6.413 7 N -0.382 5.382 8 C -0.029 4.029 9 H 0.139 0.861 10 C 0.311 3.689 11 O -0.424 6.424 12 N -0.363 5.363 13 C -0.008 4.008 14 C 0.200 3.800 15 O -0.383 6.383 16 C -0.578 4.578 17 H 0.089 0.911 18 C -0.128 4.128 19 N -0.537 5.537 20 Si 0.734 3.266 21 H -0.210 1.210 22 H -0.199 1.199 23 H -0.198 1.198 24 C -0.051 4.051 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.127 0.873 28 H 0.280 0.720 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.248 0.752 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.061 -1.626 2.612 5.922 hybrid contribution 0.275 0.871 -1.423 1.691 sum 5.336 -0.754 1.189 5.519 Atomic orbital electron populations 1.22413 0.90744 1.04612 1.05758 1.23833 0.97545 0.95836 0.79771 0.85557 1.87310 1.63653 1.39158 1.33206 1.18411 0.78022 0.80655 0.82427 1.91050 1.49839 1.42469 1.57991 1.45646 1.54645 1.31869 1.06048 1.22397 0.94349 0.89689 0.96417 0.86094 1.19842 0.82972 0.85216 0.80862 1.90709 1.64186 1.18252 1.69231 1.50325 1.35545 1.15792 1.34600 1.23522 0.87410 0.99183 0.90658 1.19793 0.84196 0.88439 0.87570 1.86058 1.63881 1.30524 1.57864 1.21435 1.51174 0.92246 0.92953 0.91076 1.25042 0.93012 0.97034 0.97726 1.69361 1.49326 1.06494 1.28538 0.86394 0.79213 0.78028 0.82958 1.20969 1.19898 1.19833 1.24526 1.03675 0.79000 0.97904 0.91138 0.90365 0.87259 0.71983 0.90868 0.89358 0.75184 0.91506 0.89512 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.60 8.47 37.16 0.31 -2.28 16 2 C 0.09 1.13 4.50 -26.16 -0.12 1.02 16 3 H 0.13 1.26 8.14 -51.93 -0.42 0.83 16 4 O -0.32 -5.09 10.80 -37.84 -0.41 -5.50 16 5 C 0.65 10.92 9.16 53.71 0.49 11.41 16 6 O -0.53 -10.44 18.04 -19.11 -0.34 -10.78 16 7 N -0.71 -9.94 5.66 -59.36 -0.34 -10.27 16 8 C 0.08 1.09 3.93 -68.19 -0.27 0.83 16 9 H 0.12 1.27 8.12 -51.93 -0.42 0.84 16 10 C 0.52 8.94 5.24 -10.99 -0.06 8.88 16 11 O -0.55 -11.20 17.10 5.56 0.10 -11.11 16 12 N -0.63 -10.87 2.81 -178.11 -0.50 -11.37 16 13 C 0.11 2.14 8.23 -2.96 -0.02 2.11 16 14 C 0.24 4.95 1.40 -90.85 -0.13 4.82 16 15 O -0.57 -12.52 12.90 -35.23 -0.45 -12.97 16 16 C -0.54 -12.08 8.61 -34.44 -0.30 -12.38 16 17 H 0.07 1.57 7.81 -52.49 -0.41 1.16 16 18 C 0.08 1.69 5.40 -17.82 -0.10 1.59 16 19 N -0.90 -20.36 11.20 55.43 0.62 -19.74 16 20 Si 0.91 17.94 29.54 -169.99 -5.02 12.92 16 21 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 22 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 C 0.07 1.24 7.49 -2.85 -0.02 1.21 16 25 H 0.07 1.19 7.40 -51.93 -0.38 0.80 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.11 1.76 5.57 -51.93 -0.29 1.47 16 28 H 0.44 5.32 8.96 -40.82 -0.37 4.96 16 29 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 30 H 0.09 1.53 8.09 -51.93 -0.42 1.11 16 31 H 0.39 8.82 6.60 45.56 0.30 9.12 16 32 H 0.27 6.03 8.31 -40.82 -0.34 5.69 16 33 H 0.09 1.45 8.09 -51.93 -0.42 1.03 16 34 H 0.07 1.19 7.91 -51.93 -0.41 0.77 16 LS Contribution 293.07 15.07 4.42 4.42 Total: -1.00 -27.80 293.07 -5.36 -33.16 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -3.22 Total: 14.03 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: -0.20 Total: 17.21 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: -0.22 Total: -41.38 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -1.11 Total: -40.36 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.02 Total: 12.92 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.80 -5.36 -33.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567757776.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.907 kcal (2) G-P(sol) polarization free energy of solvation -27.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds