Wall clock time and date at job start Mon Mar 30 2020 00:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.57304 * 2 1 4 4 O 1.45701 * 110.52300 * 122.70596 * 2 1 3 5 5 C 1.33774 * 109.47604 * 118.63129 * 4 2 1 6 6 O 1.21507 * 123.06878 * 180.02562 * 5 4 2 7 7 N 1.33999 * 113.85705 * 0.02562 * 5 4 2 8 8 C 1.47095 * 108.88297 * 359.97438 * 7 5 4 9 9 H 1.09000 * 110.56456 * 118.71832 * 8 7 5 10 10 C 1.50700 * 110.56602 * 241.42559 * 8 7 5 11 11 O 1.21278 * 119.99654 * 18.54889 * 10 8 7 12 12 N 1.34774 * 119.99993 * 198.54443 * 10 8 7 13 13 C 1.47586 * 134.48934 * 180.02562 * 12 10 8 14 14 C 1.53949 * 86.11504 * 155.36070 * 13 12 10 15 15 O 1.42903 * 113.74102 * 269.15490 * 14 13 12 16 16 C 1.50694 * 113.74088 * 137.95266 * 14 13 12 17 17 H 1.08000 * 120.00563 * 1.92388 * 16 14 13 18 18 C 1.37885 * 119.99902 * 181.92552 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.47807 * 134.45633 * 359.87247 * 12 10 8 25 25 H 1.09002 * 109.46612 * 182.70669 * 1 2 3 26 26 H 1.09000 * 109.46884 * 302.70715 * 1 2 3 27 27 H 1.09000 * 109.46926 * 62.70851 * 1 2 3 28 28 H 0.97006 * 125.55781 * 179.97438 * 7 5 4 29 29 H 1.08993 * 113.76952 * 41.05857 * 13 12 10 30 30 H 1.08993 * 113.76905 * 269.65828 * 13 12 10 31 31 H 0.96700 * 113.99800 * 178.07503 * 15 14 13 32 32 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 33 33 H 1.08995 * 113.77163 * 90.38050 * 24 12 10 34 34 H 1.09005 * 113.83876 * 318.91036 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9131 1.0205 0.0000 4 8 2.0408 -0.7373 1.1482 5 6 2.7632 -1.7800 0.7233 6 8 3.3050 -2.5629 1.4782 7 7 2.8346 -1.8821 -0.6109 8 6 2.0705 -0.7795 -1.2143 9 1 2.7219 -0.1479 -1.8183 10 6 0.9351 -1.3160 -2.0474 11 8 0.5492 -2.4543 -1.8853 12 7 0.3484 -0.5309 -2.9725 13 6 -0.7534 -0.7152 -3.9369 14 6 -0.9221 0.8139 -3.8767 15 8 -1.8442 1.2520 -2.8767 16 6 -1.1663 1.4507 -5.2205 17 1 -1.2395 0.8349 -6.1047 18 6 -1.2963 2.8197 -5.3212 19 7 -1.2077 3.5696 -4.2444 20 14 -1.5982 3.6091 -6.9870 21 1 -1.7006 5.0818 -6.8256 22 1 -0.4710 3.2878 -7.8987 23 1 -2.8638 3.0854 -7.5609 24 6 0.5490 0.8615 -3.4261 25 1 -0.3632 -1.0266 0.0485 26 1 -0.3633 0.5553 0.8647 27 1 -0.3633 0.4712 -0.9133 28 1 3.3123 -2.5709 -1.0992 29 1 -1.6024 -1.2670 -3.5338 30 1 -0.4286 -1.0833 -4.9100 31 1 -1.9310 2.2132 -2.8159 32 1 -1.2987 4.5327 -4.3154 33 1 1.2575 0.9578 -4.2488 34 1 0.7376 1.5659 -2.6159 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567757776.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:37 Heat of formation + Delta-G solvation = -135.603036 kcal Electronic energy + Delta-G solvation = -21677.993218 eV Core-core repulsion = 18191.005771 eV Total energy + Delta-G solvation = -3486.987447 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.09445 -41.07797 -39.17901 -38.43341 -35.81708 -35.76551 -34.07438 -33.30168 -30.48063 -28.22317 -26.96826 -26.71823 -24.22741 -23.49798 -21.79735 -20.08071 -19.46097 -19.22980 -18.37864 -17.85578 -17.51205 -17.06578 -16.76159 -16.39608 -15.98051 -15.80668 -15.39016 -15.03638 -14.72132 -14.37896 -14.15413 -13.86864 -13.65566 -13.37183 -13.09731 -12.78384 -12.74492 -12.67195 -12.23265 -12.13477 -12.08264 -11.98917 -11.59222 -11.15097 -10.64624 -10.47739 -10.14615 -9.58610 -8.22024 -6.36593 1.23855 1.37949 1.50954 1.55937 1.57376 1.60246 1.81353 2.40475 2.45402 2.93172 3.00700 3.14031 3.62457 3.70229 3.84177 4.06900 4.15184 4.22829 4.48343 4.63005 4.68215 4.68319 4.84192 4.92418 4.98751 5.14210 5.33251 5.58856 5.79033 5.99881 6.00900 6.67731 6.76087 6.82146 7.00355 7.36823 7.53341 8.83064 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.039520 B = 0.004961 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.339667 B = 5642.862846 C = 5838.444134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.087 3.913 3 H 0.173 0.827 4 O -0.331 6.331 5 C 0.650 3.350 6 O -0.566 6.566 7 N -0.698 5.698 8 C 0.088 3.912 9 H 0.166 0.834 10 C 0.524 3.476 11 O -0.585 6.585 12 N -0.623 5.623 13 C 0.111 3.889 14 C 0.222 3.778 15 O -0.581 6.581 16 C -0.557 4.557 17 H 0.067 0.933 18 C 0.043 3.957 19 N -0.909 5.909 20 Si 0.956 3.044 21 H -0.285 1.285 22 H -0.269 1.269 23 H -0.281 1.281 24 C 0.088 3.912 25 H 0.039 0.961 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.445 0.555 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.389 0.611 32 H 0.275 0.725 33 H 0.099 0.901 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.335 0.949 0.988 6.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.031 3.969 3 H 0.190 0.810 4 O -0.241 6.241 5 C 0.403 3.597 6 O -0.454 6.454 7 N -0.370 5.370 8 C -0.021 4.021 9 H 0.183 0.817 10 C 0.312 3.688 11 O -0.467 6.467 12 N -0.356 5.356 13 C -0.011 4.011 14 C 0.181 3.819 15 O -0.393 6.393 16 C -0.595 4.595 17 H 0.085 0.915 18 C -0.159 4.159 19 N -0.549 5.549 20 Si 0.783 3.217 21 H -0.210 1.210 22 H -0.194 1.194 23 H -0.207 1.207 24 C -0.034 4.034 25 H 0.058 0.942 26 H 0.113 0.887 27 H 0.115 0.885 28 H 0.290 0.710 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.243 0.757 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.289 -0.394 2.094 6.640 hybrid contribution -0.216 0.481 -1.301 1.403 sum 6.073 0.088 0.793 6.125 Atomic orbital electron populations 1.22321 0.92149 1.02700 1.05864 1.24175 0.96470 0.97549 0.78664 0.81005 1.87296 1.63393 1.39032 1.34352 1.18504 0.77798 0.80495 0.82860 1.91019 1.51497 1.43856 1.59029 1.45611 1.53906 1.32213 1.05222 1.22587 0.93493 0.89629 0.96424 0.81690 1.20443 0.83302 0.84583 0.80448 1.90698 1.65592 1.20151 1.70214 1.50228 1.35045 1.15884 1.34417 1.23503 0.87787 0.98128 0.91709 1.20020 0.85892 0.89136 0.86863 1.86057 1.64834 1.30128 1.58299 1.21669 1.51473 0.92597 0.93727 0.91478 1.25542 0.93053 0.97420 0.99898 1.69409 1.49608 1.06537 1.29353 0.85627 0.78645 0.77091 0.80342 1.21047 1.19445 1.20674 1.24342 1.01452 0.78935 0.98650 0.94185 0.88736 0.88480 0.71034 0.92456 0.88017 0.75700 0.91492 0.88250 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.76 8.47 71.98 0.61 -4.15 16 2 C 0.09 2.00 4.50 30.96 0.14 2.14 16 3 H 0.17 2.51 8.14 -2.39 -0.02 2.49 16 4 O -0.33 -9.72 10.80 -47.34 -0.51 -10.24 16 5 C 0.65 20.85 9.16 129.91 1.19 22.04 16 6 O -0.57 -22.11 18.04 19.66 0.35 -21.75 16 7 N -0.70 -18.02 5.66 -573.42 -3.24 -21.27 16 8 C 0.09 2.08 3.93 44.50 0.17 2.26 16 9 H 0.17 2.58 8.12 -2.39 -0.02 2.56 16 10 C 0.52 16.94 5.24 87.66 0.46 17.40 16 11 O -0.59 -23.79 17.10 -3.02 -0.05 -23.84 16 12 N -0.62 -20.42 2.81 -839.64 -2.36 -22.78 16 13 C 0.11 4.09 8.23 86.49 0.71 4.81 16 14 C 0.22 8.86 1.40 -10.88 -0.02 8.84 16 15 O -0.58 -25.24 12.90 -148.98 -1.92 -27.16 16 16 C -0.56 -24.33 8.61 25.60 0.22 -24.11 16 17 H 0.07 2.91 7.81 -2.91 -0.02 2.89 16 18 C 0.04 1.85 5.40 84.66 0.46 2.31 16 19 N -0.91 -40.04 11.20 21.45 0.24 -39.80 16 20 Si 0.96 35.84 29.54 68.60 2.03 37.87 16 21 H -0.29 -10.64 7.11 99.48 0.71 -9.93 16 22 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 23 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 24 C 0.09 2.82 7.49 86.44 0.65 3.47 16 25 H 0.04 1.33 7.40 -2.39 -0.02 1.31 16 26 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16 27 H 0.10 2.96 5.57 -2.39 -0.01 2.94 16 28 H 0.44 9.99 8.96 -92.70 -0.83 9.16 16 29 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.10 3.44 8.09 -2.39 -0.02 3.42 16 31 H 0.39 17.27 6.60 -74.06 -0.49 16.78 16 32 H 0.28 11.71 8.31 -92.71 -0.77 10.94 16 33 H 0.10 2.98 8.09 -2.39 -0.02 2.96 16 34 H 0.09 2.55 7.91 -2.38 -0.02 2.53 16 Total: -1.00 -59.67 293.07 -1.03 -60.69 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: -0.16 Total: 33.29 kcal Atomic # 6 Polarization: 30.39 SS G_CDS: 4.59 Total: 34.99 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -5.36 Total: -83.85 kcal Atomic # 8 Polarization: -80.86 SS G_CDS: -2.13 Total: -82.99 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 2.03 Total: 37.87 kcal Total: -59.67 -1.03 -60.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567757776.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.909 kcal (2) G-P(sol) polarization free energy of solvation -59.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds