Wall clock time and date at job start Mon Mar 30 2020 00:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.46498 * 2 1 4 4 O 1.45699 * 110.52612 * 122.63535 * 2 1 3 5 5 C 1.33764 * 109.48086 * 118.62968 * 4 2 1 6 6 O 1.21510 * 123.07573 * 180.02562 * 5 4 2 7 7 N 1.34009 * 113.85615 * 0.02562 * 5 4 2 8 8 C 1.47096 * 108.87852 * 0.02562 * 7 5 4 9 9 H 1.08996 * 110.55934 * 241.42375 * 8 7 5 10 10 C 1.50702 * 110.56290 * 118.57225 * 8 7 5 11 11 O 1.21282 * 120.00019 * 345.64562 * 10 8 7 12 12 N 1.34772 * 120.00141 * 165.64232 * 10 8 7 13 13 C 1.47067 * 136.05457 * 359.62850 * 12 10 8 14 14 C 1.53760 * 87.88836 * 152.96408 * 13 12 10 15 15 O 1.42900 * 114.39315 * 272.67722 * 14 13 12 16 16 C 1.50698 * 114.26699 * 139.79005 * 14 13 12 17 17 H 1.08005 * 120.00300 * 266.47919 * 16 14 13 18 18 C 1.37878 * 119.99988 * 86.47600 * 16 14 13 19 19 N 1.31520 * 119.99703 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99982 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.47358 * 59.99995 * 20 18 16 22 22 H 1.48501 * 109.46941 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47147 * 299.99747 * 20 18 16 24 24 C 1.47063 * 136.06030 * 180.02562 * 12 10 8 25 25 H 1.09002 * 109.47153 * 298.81855 * 1 2 3 26 26 H 1.09001 * 109.46832 * 178.82046 * 1 2 3 27 27 H 1.09004 * 109.47261 * 58.82027 * 1 2 3 28 28 H 0.97001 * 125.55700 * 180.02562 * 7 5 4 29 29 H 1.09005 * 113.46889 * 267.69806 * 13 12 10 30 30 H 1.09004 * 113.46836 * 38.13383 * 13 12 10 31 31 H 0.96698 * 113.99482 * 273.58379 * 15 14 13 32 32 H 0.97006 * 119.99353 * 179.97438 * 19 18 16 33 33 H 1.09002 * 113.46803 * 321.86741 * 24 12 10 34 34 H 1.09003 * 113.47063 * 92.24514 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 8 2.0408 -0.7359 1.1491 5 6 2.7631 -1.7790 0.7255 6 8 3.3050 -2.5610 1.4814 7 7 2.8345 -1.8829 -0.6086 8 6 2.0714 -0.7803 -1.2134 9 1 1.2499 -1.1685 -1.8154 10 6 2.9735 0.0932 -2.0465 11 8 4.1778 -0.0004 -1.9376 12 7 2.4421 0.9784 -2.9127 13 6 1.0868 1.3732 -3.3253 14 6 1.6581 2.7570 -3.6760 15 8 1.6839 3.6788 -2.5844 16 6 1.1048 3.3520 -4.9452 17 1 1.6234 3.2055 -5.8812 18 6 -0.0635 4.0834 -4.9115 19 7 -0.6953 4.2613 -3.7718 20 14 -0.7497 4.8203 -6.4849 21 1 -1.0341 3.7345 -7.4571 22 1 -2.0042 5.5548 -6.1814 23 1 0.2439 5.7581 -7.0668 24 6 2.9622 1.9697 -3.8665 25 1 -0.3633 0.4954 0.9004 26 1 -0.3633 -1.0275 -0.0212 27 1 -0.3634 0.5321 -0.8792 28 1 3.3116 -2.5727 -1.0960 29 1 0.7192 0.8231 -4.1915 30 1 0.3713 1.3930 -2.5032 31 1 0.8609 4.1728 -2.4674 32 1 -1.5170 4.7762 -3.7481 33 1 3.8449 2.4978 -3.5056 34 1 3.0896 1.5765 -4.8751 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567757777.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:39 Heat of formation + Delta-G solvation = -135.722595 kcal Electronic energy + Delta-G solvation = -21475.880290 eV Core-core repulsion = 17988.887658 eV Total energy + Delta-G solvation = -3486.992632 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.07486 -41.17197 -39.24950 -38.51433 -35.91073 -35.85061 -34.06877 -33.22617 -30.78919 -28.31862 -26.84057 -26.60610 -24.10712 -23.47688 -22.11353 -20.29108 -19.45853 -19.04063 -18.47417 -18.10011 -17.52396 -17.05345 -16.59574 -16.35369 -16.05124 -15.75917 -15.68035 -14.97103 -14.65905 -14.48987 -14.27733 -13.91089 -13.68715 -13.35910 -13.14276 -12.81269 -12.71777 -12.65815 -12.19801 -12.11692 -12.06842 -11.96670 -11.65864 -11.17235 -10.69424 -10.49089 -10.16524 -9.65369 -8.24040 -6.39243 1.21198 1.29408 1.51744 1.52173 1.56338 1.61192 1.78916 2.36571 2.44552 2.89914 2.98069 3.14840 3.51279 3.73064 3.80578 4.00022 4.15501 4.18859 4.44078 4.58451 4.71646 4.79188 4.81333 4.89899 4.97298 5.24578 5.29128 5.56957 5.77924 5.95428 5.97587 6.65367 6.74398 6.78851 6.94343 7.34438 7.55194 8.81554 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.035844 B = 0.005007 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.968239 B = 5590.453714 C = 5991.545189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.081 3.919 3 H 0.108 0.892 4 O -0.331 6.331 5 C 0.650 3.350 6 O -0.563 6.563 7 N -0.697 5.697 8 C 0.097 3.903 9 H 0.166 0.834 10 C 0.521 3.479 11 O -0.584 6.584 12 N -0.625 5.625 13 C 0.080 3.920 14 C 0.219 3.781 15 O -0.585 6.585 16 C -0.552 4.552 17 H 0.072 0.928 18 C 0.040 3.960 19 N -0.912 5.912 20 Si 0.962 3.038 21 H -0.267 1.267 22 H -0.285 1.285 23 H -0.280 1.280 24 C 0.105 3.895 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.446 0.554 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.391 0.609 32 H 0.277 0.723 33 H 0.050 0.950 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.411 -6.702 -0.037 8.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.025 3.975 3 H 0.126 0.874 4 O -0.241 6.241 5 C 0.403 3.597 6 O -0.451 6.451 7 N -0.369 5.369 8 C -0.013 4.013 9 H 0.183 0.817 10 C 0.309 3.691 11 O -0.465 6.465 12 N -0.358 5.358 13 C -0.041 4.041 14 C 0.178 3.822 15 O -0.399 6.399 16 C -0.590 4.590 17 H 0.090 0.910 18 C -0.161 4.161 19 N -0.553 5.553 20 Si 0.788 3.212 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.206 1.206 24 C -0.018 4.018 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.120 0.880 28 H 0.291 0.709 29 H 0.122 0.878 30 H 0.101 0.899 31 H 0.247 0.753 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.143 -7.239 1.042 7.960 hybrid contribution -0.291 0.567 -1.101 1.272 sum -3.433 -6.672 -0.059 7.504 Atomic orbital electron populations 1.22204 0.87857 1.05261 1.05743 1.24030 0.98996 0.95640 0.78840 0.87364 1.87293 1.63807 1.38743 1.34297 1.18510 0.77800 0.80477 0.82868 1.91021 1.50924 1.44301 1.58902 1.45609 1.55940 1.30140 1.05197 1.22462 0.94802 0.87848 0.96166 0.81702 1.20496 0.88340 0.79723 0.80493 1.90701 1.16691 1.69712 1.69431 1.49714 1.12787 1.35953 1.37296 1.24295 0.83336 0.96760 0.99759 1.19812 0.90669 0.85882 0.85863 1.86043 1.44297 1.57518 1.52004 1.21603 1.08520 1.34767 0.94137 0.90966 1.25609 0.96141 0.94968 0.99392 1.69281 1.18797 1.40793 1.26386 0.85541 0.77320 0.78602 0.79764 1.19173 1.21030 1.20562 1.23448 0.98798 0.86865 0.92668 0.89350 0.89412 0.88042 0.70908 0.87767 0.89873 0.75287 0.91317 0.93108 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.46 71.98 0.68 -1.99 16 2 C 0.08 2.00 4.14 30.96 0.13 2.12 16 3 H 0.11 3.03 7.73 -2.39 -0.02 3.01 16 4 O -0.33 -10.09 10.80 -47.25 -0.51 -10.60 16 5 C 0.65 21.16 9.16 129.91 1.19 22.35 16 6 O -0.56 -22.11 18.04 19.65 0.35 -21.76 16 7 N -0.70 -18.32 5.63 -573.42 -3.23 -21.55 16 8 C 0.10 2.37 3.65 44.50 0.16 2.53 16 9 H 0.17 2.75 7.73 -2.39 -0.02 2.73 16 10 C 0.52 17.48 7.21 87.66 0.63 18.11 16 11 O -0.58 -24.37 17.34 -3.04 -0.05 -24.42 16 12 N -0.63 -21.28 3.69 -858.18 -3.16 -24.44 16 13 C 0.08 2.63 7.86 83.26 0.65 3.29 16 14 C 0.22 9.01 1.58 -11.11 -0.02 9.00 16 15 O -0.59 -26.82 13.55 -148.98 -2.02 -28.84 16 16 C -0.55 -24.28 8.70 25.60 0.22 -24.06 16 17 H 0.07 3.10 7.81 -2.91 -0.02 3.08 16 18 C 0.04 1.76 5.39 84.65 0.46 2.21 16 19 N -0.91 -40.70 11.01 21.45 0.24 -40.47 16 20 Si 0.96 35.69 29.54 68.60 2.03 37.72 16 21 H -0.27 -9.57 7.11 99.48 0.71 -8.87 16 22 H -0.28 -10.54 7.11 99.48 0.71 -9.83 16 23 H -0.28 -10.64 7.11 99.48 0.71 -9.93 16 24 C 0.10 3.95 8.02 83.18 0.67 4.62 16 25 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 26 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.10 1.66 6.56 -2.38 -0.02 1.64 16 28 H 0.45 10.12 8.96 -92.71 -0.83 9.29 16 29 H 0.10 3.09 8.10 -2.38 -0.02 3.07 16 30 H 0.08 2.49 6.56 -2.38 -0.02 2.47 16 31 H 0.39 18.21 6.32 -74.06 -0.47 17.75 16 32 H 0.28 11.85 8.31 -92.70 -0.77 11.08 16 33 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.11 3.60 8.10 -2.39 -0.02 3.59 16 Total: -1.00 -60.69 296.68 -1.72 -62.40 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: -0.14 Total: 33.78 kcal Atomic # 6 Polarization: 33.41 SS G_CDS: 4.78 Total: 38.18 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -6.15 Total: -86.46 kcal Atomic # 8 Polarization: -83.39 SS G_CDS: -2.23 Total: -85.62 kcal Atomic # 14 Polarization: 35.69 SS G_CDS: 2.03 Total: 37.72 kcal Total: -60.69 -1.72 -62.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567757777.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.321 kcal (2) G-P(sol) polarization free energy of solvation -60.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds