Wall clock time and date at job start Mon Mar 30 2020 01:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00120 * 2 1 4 4 H 1.48499 * 109.47164 * 270.00082 * 3 2 1 5 5 H 1.48504 * 109.47102 * 29.99977 * 3 2 1 6 6 H 1.48502 * 109.47014 * 149.99991 * 3 2 1 7 7 C 1.37871 * 119.99617 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00228 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99885 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47192 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46812 * 179.97438 * 10 9 7 12 12 O 1.21268 * 120.00031 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99406 * 179.97438 * 11 10 9 14 14 C 1.38920 * 119.99381 * 179.97438 * 13 11 10 15 15 N 1.31875 * 120.14060 * 359.97438 * 14 13 11 16 16 C 1.32607 * 122.66335 * 180.02562 * 15 14 13 17 17 C 1.36132 * 121.97809 * 359.35025 * 16 15 14 18 18 C 1.40804 * 118.82631 * 0.96485 * 17 16 15 19 19 C 1.40191 * 122.18360 * 179.08341 * 18 17 16 20 20 C 1.36266 * 119.47730 * 180.02562 * 19 18 17 21 21 C 1.39302 * 120.98508 * 359.97095 * 20 19 18 22 22 C 1.36285 * 121.04828 * 0.02613 * 21 20 19 23 23 C 1.40128 * 119.52966 * 0.27716 * 22 21 20 24 24 H 0.97003 * 119.99871 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47197 * 60.00199 * 9 7 2 26 26 H 1.09005 * 109.47076 * 300.00486 * 9 7 2 27 27 H 1.08997 * 109.47293 * 59.99761 * 10 9 7 28 28 H 1.09000 * 109.46657 * 299.99827 * 10 9 7 29 29 H 0.97000 * 120.00330 * 0.02562 * 13 11 10 30 30 H 1.07996 * 119.01236 * 179.97438 * 16 15 14 31 31 H 1.07997 * 120.57991 * 180.02562 * 17 16 15 32 32 H 1.08001 * 120.26422 * 0.02562 * 19 18 17 33 33 H 1.08004 * 119.51303 * 179.97438 * 20 19 18 34 34 H 1.08000 * 119.47769 * 179.97438 * 21 20 19 35 35 H 1.08002 * 120.23134 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 6 5.5285 -2.6366 0.0009 12 8 6.1348 -1.5864 0.0005 13 7 6.2023 -3.8039 0.0014 14 6 7.5915 -3.8038 0.0008 15 7 8.2536 -2.6634 -0.0007 16 6 9.5784 -2.6050 -0.0018 17 6 10.3495 -3.7268 0.0116 18 6 9.7177 -4.9851 0.0063 19 6 10.4429 -6.1848 0.0003 20 6 9.7745 -7.3723 -0.0052 21 6 8.3821 -7.4115 -0.0043 22 6 7.6466 -6.2642 0.0015 23 6 8.3003 -5.0247 0.0008 24 1 -0.4850 0.8401 0.0004 25 1 3.8745 -0.6801 0.8911 26 1 3.8752 -0.6804 -0.8888 27 1 3.6584 -3.1503 -0.8892 28 1 3.6577 -3.1506 0.8908 29 1 5.7173 -4.6439 0.0013 30 1 10.0601 -1.6384 -0.0034 31 1 11.4270 -3.6529 0.0108 32 1 11.5228 -6.1681 0.0000 33 1 10.3327 -8.2969 -0.0103 34 1 7.8773 -8.3663 -0.0092 35 1 6.5675 -6.3100 0.0017 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569032968.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:02 Heat of formation + Delta-G solvation = 24.230460 kcal Electronic energy + Delta-G solvation = -19213.045366 eV Core-core repulsion = 16176.130834 eV Total energy + Delta-G solvation = -3036.914532 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.24752 -39.31638 -37.34007 -35.17747 -33.52546 -32.15539 -31.32384 -31.18665 -29.34723 -26.37967 -24.21928 -23.89995 -22.53153 -21.03543 -19.95686 -18.56988 -17.85291 -16.95246 -16.71496 -15.92049 -15.73545 -15.49126 -14.82610 -14.29482 -14.24696 -14.02899 -13.80724 -13.53501 -12.94448 -12.87145 -12.58195 -12.18619 -12.00927 -11.46644 -11.39561 -11.04694 -10.88171 -10.21290 -10.10098 -9.91421 -9.71183 -9.61740 -9.28157 -9.21581 -8.84762 -8.52147 -7.79843 -6.04472 -4.03756 0.26349 0.74671 1.72087 2.84898 2.90437 3.14899 3.38274 3.44945 3.56148 4.03262 4.31073 4.35120 4.50304 4.52293 4.64460 4.75163 4.95981 5.01832 5.20195 5.31103 5.34403 5.54447 5.55072 5.70639 5.85756 5.97217 6.00389 6.11486 6.19380 6.22267 6.53955 6.59185 6.74260 7.26182 7.32374 7.39132 7.75854 8.11914 8.46205 8.54612 8.97805 9.58361 11.08189 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.036663 B = 0.003802 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.522008 B = 7363.630571 C = 8106.698427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.260 1.260 7 C -0.526 4.526 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.120 4.120 11 C 0.496 3.504 12 O -0.463 6.463 13 N -0.662 5.662 14 C 0.407 3.593 15 N -0.490 5.490 16 C 0.125 3.875 17 C -0.209 4.209 18 C 0.002 3.998 19 C -0.118 4.118 20 C -0.095 4.095 21 C -0.130 4.130 22 C -0.082 4.082 23 C -0.133 4.133 24 H 0.264 0.736 25 H 0.025 0.975 26 H 0.021 0.979 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.415 0.585 30 H 0.154 0.846 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.988 -16.366 0.025 26.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.564 4.564 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.160 4.160 11 C 0.284 3.716 12 O -0.329 6.329 13 N -0.309 5.309 14 C 0.162 3.838 15 N -0.207 5.207 16 C -0.021 4.021 17 C -0.231 4.231 18 C -0.003 4.003 19 C -0.136 4.136 20 C -0.114 4.114 21 C -0.148 4.148 22 C -0.102 4.102 23 C -0.138 4.138 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.252 0.748 30 H 0.171 0.829 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 20.763 -14.541 0.027 25.348 hybrid contribution 0.609 -0.396 -0.028 0.727 sum 21.372 -14.938 -0.001 26.075 Atomic orbital electron populations 1.69910 1.06300 1.27028 1.50913 1.24962 0.94713 0.99252 0.94246 0.86801 0.80651 0.83355 0.78805 1.20198 1.21412 1.18461 1.21073 0.89109 0.94622 1.51587 0.90862 1.19399 0.96587 0.89842 0.97893 1.21738 0.86657 1.03849 1.03708 1.21975 0.91691 0.82541 0.75435 1.90772 1.69901 1.30203 1.42069 1.44099 1.02941 1.11670 1.72222 1.18762 0.85326 0.88586 0.91103 1.67571 1.09653 1.26567 1.16891 1.22135 0.88077 0.98734 0.93109 1.21708 1.00986 0.92140 1.08289 1.17971 0.91551 0.94463 0.96297 1.20934 0.99862 0.91310 1.01488 1.20975 0.94525 0.98105 0.97812 1.20837 0.94099 0.98359 1.01517 1.20852 0.99803 0.91418 0.98122 1.18478 0.93863 0.93290 1.08161 0.92673 0.95633 0.96090 0.89197 0.89165 0.74751 0.82862 0.84702 0.85132 0.85660 0.85514 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.61 27.47 -169.99 -4.67 17.94 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.70 6.54 56.52 0.37 -6.33 16 7 C -0.53 -14.91 9.66 -34.44 -0.33 -15.24 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C 0.00 0.02 3.33 -27.88 -0.09 -0.08 16 10 C -0.12 -2.25 5.64 -27.88 -0.16 -2.41 16 11 C 0.50 9.21 7.79 -10.98 -0.09 9.12 16 12 O -0.46 -10.56 14.25 5.57 0.08 -10.49 16 13 N -0.66 -9.52 5.33 -11.11 -0.06 -9.58 16 14 C 0.41 6.20 7.48 -154.77 -1.16 5.04 16 15 N -0.49 -8.46 7.85 -12.37 -0.10 -8.56 16 16 C 0.12 1.68 11.06 -17.97 -0.20 1.48 16 17 C -0.21 -2.30 9.87 -39.37 -0.39 -2.69 16 18 C 0.00 0.03 5.74 -106.83 -0.61 -0.59 16 19 C -0.12 -1.02 9.81 -39.56 -0.39 -1.41 16 20 C -0.10 -0.72 9.95 -39.90 -0.40 -1.11 16 21 C -0.13 -1.02 9.95 -39.89 -0.40 -1.42 16 22 C -0.08 -0.78 9.52 -39.58 -0.38 -1.15 16 23 C -0.13 -1.65 5.75 -106.71 -0.61 -2.26 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.03 0.66 7.16 -51.93 -0.37 0.29 16 26 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 27 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 29 H 0.41 4.21 6.86 -40.82 -0.28 3.93 16 30 H 0.15 1.71 8.06 -52.49 -0.42 1.28 16 31 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 34 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 35 H 0.13 0.90 6.51 -52.49 -0.34 0.56 16 LS Contribution 301.56 15.07 4.54 4.54 Total: -1.00 -36.27 301.56 -8.66 -44.93 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -3.93 Total: -0.93 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -5.30 Total: -10.74 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.62 Total: -45.26 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.67 Total: 17.94 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -36.27 -8.66 -44.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569032968.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.159 kcal (2) G-P(sol) polarization free energy of solvation -36.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds