Wall clock time and date at job start Mon Mar 30 2020 00:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47204 * 2 1 4 4 H 1.09007 * 109.46721 * 305.00148 * 3 2 1 5 5 C 1.50694 * 109.47355 * 184.99859 * 3 2 1 6 6 H 1.08000 * 120.00563 * 239.99848 * 5 3 2 7 7 C 1.37885 * 119.99902 * 60.00012 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 N 1.46497 * 109.47021 * 64.99787 * 3 2 1 14 14 C 1.34779 * 119.99943 * 275.00054 * 13 3 2 15 15 O 1.21283 * 120.00516 * 0.02562 * 14 13 3 16 16 C 1.50709 * 119.99796 * 180.02562 * 14 13 3 17 17 H 1.08994 * 110.86008 * 58.80247 * 16 14 13 18 18 C 1.54737 * 110.97217 * 294.99966 * 16 14 13 19 19 C 1.51689 * 102.55098 * 217.67364 * 18 16 14 20 20 C 1.47475 * 125.86633 * 195.39360 * 19 18 16 21 21 O 1.21476 * 119.99847 * 359.97438 * 20 19 18 22 22 O 1.34747 * 120.00073 * 179.97438 * 20 19 18 23 23 N 1.29056 * 108.26914 * 15.38915 * 19 18 16 24 24 O 1.41390 * 112.88316 * 0.32155 * 23 19 18 25 25 H 1.09000 * 109.46755 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.46922 * 299.99976 * 1 2 3 27 27 H 1.08997 * 109.46919 * 60.00309 * 1 2 3 28 28 H 1.09001 * 109.47496 * 240.00053 * 2 1 3 29 29 H 1.09002 * 109.47332 * 119.99482 * 2 1 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 31 31 H 0.96997 * 120.00208 * 95.00345 * 13 3 2 32 32 H 1.09001 * 110.79240 * 335.93486 * 18 16 14 33 33 H 1.08998 * 110.79189 * 99.40175 * 18 16 14 34 34 H 0.96701 * 117.00419 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3366 -2.1729 9 14 6.0050 0.8813 -1.3817 10 1 6.3979 0.2167 -2.6503 11 1 6.4994 2.2815 -1.3821 12 1 6.5975 0.1474 -0.2348 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3397 2.6319 0.4343 16 6 0.0366 3.3387 2.6544 17 1 0.7267 4.1459 2.8996 18 6 -0.0518 2.3150 3.8114 19 6 -1.2488 2.8113 4.6000 20 6 -1.6043 2.4113 5.9742 21 8 -0.9100 1.6151 6.5738 22 8 -2.6994 2.9290 6.5646 23 7 -1.9025 3.6439 3.8618 24 8 -1.3204 3.8217 2.5856 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8294 -0.0612 -2.9498 31 1 2.2719 2.1232 1.9977 32 1 -0.2312 1.3110 3.4269 33 1 0.8513 2.3413 4.4212 34 1 -2.8916 2.6370 7.4662 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589463783.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:23 Heat of formation + Delta-G solvation = -100.416444 kcal Electronic energy + Delta-G solvation = -20770.764706 eV Core-core repulsion = 17285.303064 eV Total energy + Delta-G solvation = -3485.461642 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.13188 -40.15897 -38.61885 -36.64346 -35.19667 -33.43549 -32.68237 -31.58849 -30.44792 -27.10663 -25.67289 -24.64938 -23.00623 -20.85173 -20.53118 -19.51888 -18.58445 -17.85506 -17.66955 -16.35784 -16.16676 -15.96952 -15.42003 -15.18789 -14.57782 -14.32021 -13.81593 -13.59091 -13.44105 -12.77982 -12.77208 -12.40240 -12.08398 -11.94407 -11.55471 -11.49014 -11.34415 -11.28202 -11.06398 -10.88504 -10.42452 -10.28569 -10.11286 -9.72416 -9.17792 -9.11454 -8.57885 -8.01085 -6.19141 -4.29544 0.36879 1.90612 2.28521 2.68341 3.02171 3.21637 3.27681 3.28181 3.69603 4.00611 4.18845 4.28917 4.41028 4.70722 5.00525 5.12377 5.17824 5.37197 5.40259 5.82929 6.31012 6.35862 6.56204 6.62300 6.93241 7.09813 7.21803 7.29200 7.30541 7.51485 7.61682 7.79556 8.08499 8.45285 8.65365 8.90364 9.37624 10.86082 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.030549 B = 0.004256 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.349442 B = 6577.351319 C = 6818.483385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.052 0.948 5 C -0.538 4.538 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.903 3.097 10 H -0.286 1.286 11 H -0.276 1.276 12 H -0.276 1.276 13 N -0.698 5.698 14 C 0.507 3.493 15 O -0.518 6.518 16 C 0.021 3.979 17 H 0.119 0.881 18 C -0.119 4.119 19 C 0.050 3.950 20 C 0.567 3.433 21 O -0.484 6.484 22 O -0.495 6.495 23 N -0.205 5.205 24 O -0.140 6.140 25 H 0.025 0.975 26 H 0.035 0.965 27 H 0.051 0.949 28 H 0.101 0.899 29 H 0.033 0.967 30 H 0.266 0.734 31 H 0.390 0.610 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.088 3.223 15.416 16.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.070 0.930 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.211 1.211 11 H -0.201 1.201 12 H -0.201 1.201 13 N -0.348 5.348 14 C 0.288 3.712 15 O -0.395 6.395 16 C -0.041 4.041 17 H 0.136 0.864 18 C -0.159 4.159 19 C -0.143 4.143 20 C 0.407 3.593 21 O -0.368 6.368 22 O -0.306 6.306 23 N 0.053 4.947 24 O -0.165 6.165 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.120 0.880 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.223 0.777 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -7.307 3.704 14.106 16.312 hybrid contribution 1.919 -0.673 0.865 2.210 sum -5.388 3.030 14.971 16.198 Atomic orbital electron populations 1.21853 0.98345 0.98252 1.01136 1.21961 0.92539 0.99659 1.02566 1.18880 0.94436 0.89210 0.80448 0.93025 1.21153 0.90427 1.39527 1.06512 0.92000 1.24882 0.98708 0.94666 0.95308 1.69877 1.35342 1.37243 1.09311 0.86492 0.84650 0.78353 0.77519 1.21099 1.20148 1.20126 1.46465 1.13768 1.55530 1.19027 1.19587 0.83739 0.80276 0.87616 1.90756 1.51090 1.58346 1.39261 1.23916 0.87037 0.97210 0.95977 0.86372 1.22821 0.97162 1.02220 0.93678 1.24656 0.98669 0.97261 0.93698 1.19139 0.78405 0.77711 0.84073 1.90992 1.50848 1.31409 1.63575 1.84644 1.43337 1.66935 1.35698 1.78549 1.16179 1.08318 0.91667 1.91457 1.23875 1.80362 1.20827 0.95613 0.94640 0.92998 0.88044 0.94830 0.92379 0.77717 0.86325 0.85926 0.71738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.51 37.16 0.32 -2.66 16 2 C -0.13 -2.97 5.45 -26.73 -0.15 -3.11 16 3 C 0.27 6.44 2.24 -69.09 -0.15 6.28 16 4 H 0.05 1.44 7.58 -51.92 -0.39 1.04 16 5 C -0.54 -13.46 8.73 -34.44 -0.30 -13.76 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.88 11.29 55.43 0.63 -23.25 16 9 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 10 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 N -0.70 -13.09 5.01 -54.93 -0.28 -13.36 16 14 C 0.51 9.37 5.71 -10.98 -0.06 9.30 16 15 O -0.52 -11.87 13.72 -13.29 -0.18 -12.06 16 16 C 0.02 0.29 4.23 -26.96 -0.11 0.18 16 17 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 18 C -0.12 -1.35 6.43 -26.48 -0.17 -1.52 16 19 C 0.05 0.59 7.30 -79.51 -0.58 0.00 16 20 C 0.57 5.72 8.34 34.49 0.29 6.00 16 21 O -0.48 -5.68 17.74 -19.25 -0.34 -6.03 16 22 O -0.49 -3.69 13.43 -40.62 -0.55 -4.23 16 23 N -0.21 -2.90 12.51 35.26 0.44 -2.46 16 24 O -0.14 -2.31 11.82 -30.22 -0.36 -2.67 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.03 0.73 5.64 -51.93 -0.29 0.44 16 27 H 0.05 1.20 7.85 -51.93 -0.41 0.80 16 28 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.39 6.05 8.54 -40.82 -0.35 5.70 16 32 H 0.12 1.42 7.90 -51.93 -0.41 1.01 16 33 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.42 0.82 9.11 45.56 0.42 1.23 16 LS Contribution 299.82 15.07 4.52 4.52 Total: -1.00 -32.27 299.82 -5.14 -37.41 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -2.98 Total: 4.88 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -1.02 Total: 2.38 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.79 Total: -39.07 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -1.43 Total: -24.99 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.27 -5.14 -37.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589463783.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.010 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds