Wall clock time and date at job start Mon Mar 30 2020 00:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47016 * 2 1 4 4 H 1.09000 * 109.47031 * 55.00289 * 3 2 1 5 5 C 1.50700 * 109.46882 * 175.00076 * 3 2 1 6 6 H 1.08001 * 120.00145 * 120.00053 * 5 3 2 7 7 C 1.37880 * 120.00017 * 300.00277 * 5 3 2 8 8 N 1.31514 * 119.99952 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00116 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47303 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47520 * 119.99404 * 9 7 5 12 12 H 1.48499 * 109.47285 * 239.99503 * 9 7 5 13 13 N 1.46494 * 109.46915 * 294.99983 * 3 2 1 14 14 C 1.34777 * 120.00098 * 85.00210 * 13 3 2 15 15 O 1.21279 * 119.99673 * 0.02562 * 14 13 3 16 16 C 1.50707 * 120.00217 * 179.97438 * 14 13 3 17 17 H 1.09000 * 110.88613 * 58.82220 * 16 14 13 18 18 C 1.54740 * 110.97295 * 295.00581 * 16 14 13 19 19 C 1.51687 * 102.71878 * 217.76173 * 18 16 14 20 20 C 1.47475 * 125.86402 * 195.29235 * 19 18 16 21 21 O 1.21474 * 119.99801 * 0.02562 * 20 19 18 22 22 O 1.34751 * 119.99989 * 180.02562 * 20 19 18 23 23 N 1.29059 * 108.27280 * 15.29361 * 19 18 16 24 24 O 1.41387 * 112.87968 * 0.31989 * 23 19 18 25 25 H 1.09001 * 109.47363 * 300.00105 * 1 2 3 26 26 H 1.08999 * 109.47141 * 59.99797 * 1 2 3 27 27 H 1.09004 * 109.47211 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46893 * 239.99940 * 2 1 3 29 29 H 1.08999 * 109.47141 * 120.00203 * 2 1 3 30 30 H 0.96999 * 119.99711 * 180.02562 * 8 7 5 31 31 H 0.97003 * 120.00106 * 264.99571 * 13 3 2 32 32 H 1.09002 * 110.79597 * 99.40080 * 18 16 14 33 33 H 1.08996 * 110.79171 * 336.12121 * 18 16 14 34 34 H 0.96704 * 117.00337 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0049 0.8811 1.3818 10 1 6.5988 1.5462 0.1942 11 1 6.3990 1.6166 2.6102 12 1 6.4970 -0.5176 1.4630 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6643 -1.3669 15 8 -0.3392 2.6327 -0.4340 16 6 0.0366 3.3386 -2.6545 17 1 0.0801 2.6389 -3.4892 18 6 0.9194 4.5801 -2.9259 19 6 -0.0662 5.5668 -3.5225 20 6 0.2809 6.7984 -4.2557 21 8 1.4463 7.0961 -4.4255 22 8 -0.6948 7.5934 -4.7372 23 7 -1.2606 5.1434 -3.2784 24 8 -1.2762 3.9333 -2.5472 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8293 -0.0605 2.9502 31 1 2.2719 2.1231 -1.9978 32 1 1.7102 4.3444 -3.6381 33 1 1.3397 4.9665 -1.9974 34 1 -0.4184 8.3897 -5.2113 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589463784.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:25 Heat of formation + Delta-G solvation = -100.552191 kcal Electronic energy + Delta-G solvation = -20687.260079 eV Core-core repulsion = 17201.792550 eV Total energy + Delta-G solvation = -3485.467528 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.10196 -40.13401 -38.61900 -36.62922 -35.19117 -33.41311 -32.68630 -31.61838 -30.37539 -27.13187 -25.66080 -24.64169 -22.97478 -20.85050 -20.52550 -19.51785 -18.56814 -17.86043 -17.64499 -16.32825 -16.14356 -15.87980 -15.55398 -15.16217 -14.60097 -14.29084 -13.90139 -13.52423 -13.24566 -12.88162 -12.75634 -12.43161 -12.07629 -11.88318 -11.56981 -11.46644 -11.33896 -11.28063 -11.03090 -10.91084 -10.39252 -10.27493 -10.12985 -9.69883 -9.16148 -9.10934 -8.58517 -8.01049 -6.19696 -4.29922 0.38200 1.91760 2.29958 2.69218 3.02217 3.19579 3.28078 3.29966 3.69660 4.01124 4.19645 4.28731 4.42072 4.71956 5.01714 5.11749 5.18105 5.40690 5.41127 5.84330 6.33286 6.38757 6.58329 6.62840 6.95763 7.11152 7.22299 7.30314 7.31911 7.52260 7.62003 7.79488 8.08705 8.45171 8.65464 8.90382 9.37450 10.85623 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.023217 B = 0.004682 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.736120 B = 5978.450239 C = 6988.634182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.271 3.729 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.698 5.698 14 C 0.507 3.493 15 O -0.519 6.519 16 C 0.022 3.978 17 H 0.118 0.882 18 C -0.120 4.120 19 C 0.050 3.950 20 C 0.567 3.433 21 O -0.484 6.484 22 O -0.495 6.495 23 N -0.206 5.206 24 O -0.142 6.142 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.025 0.975 28 H 0.033 0.967 29 H 0.101 0.899 30 H 0.265 0.735 31 H 0.390 0.610 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.733 8.717 -13.305 16.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.348 5.348 14 C 0.288 3.712 15 O -0.395 6.395 16 C -0.041 4.041 17 H 0.135 0.865 18 C -0.159 4.159 19 C -0.142 4.142 20 C 0.407 3.593 21 O -0.368 6.368 22 O -0.306 6.306 23 N 0.052 4.948 24 O -0.167 6.167 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.223 0.777 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -5.261 8.478 -12.290 15.831 hybrid contribution 2.296 0.201 -0.493 2.357 sum -2.965 8.679 -12.783 15.733 Atomic orbital electron populations 1.21856 0.98259 0.98309 1.01228 1.21957 0.92646 0.99612 1.02522 1.18892 0.94465 0.89268 0.80414 0.93050 1.21229 0.90418 1.39357 1.06482 0.91881 1.24882 0.98706 0.94682 0.95324 1.69898 1.35151 1.37402 1.09299 0.86387 0.84674 0.77827 0.78177 1.19704 1.20851 1.20840 1.46466 1.13678 1.55597 1.19048 1.19581 0.83710 0.80408 0.87514 1.90756 1.50996 1.58589 1.39124 1.23955 0.83509 0.96228 1.00358 0.86452 1.22811 0.99051 0.89934 1.04132 1.24659 0.94227 0.95704 0.99613 1.19139 0.82910 0.81377 0.75921 1.90995 1.19941 1.71624 1.54210 1.84644 1.39947 1.37933 1.68112 1.78547 1.20029 0.96580 0.99604 1.91494 1.28899 1.27901 1.68366 0.93051 0.94416 0.95606 0.94845 0.88083 0.92498 0.77711 0.85948 0.86173 0.71742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.52 37.16 0.32 -2.70 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.41 2.24 -69.08 -0.15 6.26 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -13.39 8.73 -34.44 -0.30 -13.69 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.86 11.29 55.43 0.63 -23.23 16 9 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 10 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.70 -13.07 5.01 -54.93 -0.28 -13.34 16 14 C 0.51 9.35 5.71 -10.98 -0.06 9.29 16 15 O -0.52 -11.87 13.74 -13.12 -0.18 -12.05 16 16 C 0.02 0.30 4.25 -26.96 -0.11 0.19 16 17 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 18 C -0.12 -1.38 6.42 -26.48 -0.17 -1.55 16 19 C 0.05 0.60 7.30 -79.51 -0.58 0.02 16 20 C 0.57 5.80 8.34 34.49 0.29 6.09 16 21 O -0.48 -5.78 17.74 -19.24 -0.34 -6.12 16 22 O -0.50 -3.74 13.43 -40.63 -0.55 -4.29 16 23 N -0.21 -2.93 12.51 35.26 0.44 -2.49 16 24 O -0.14 -2.33 11.85 -30.05 -0.36 -2.69 16 25 H 0.05 1.19 7.85 -51.93 -0.41 0.79 16 26 H 0.04 0.79 5.65 -51.93 -0.29 0.49 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 30 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.39 6.05 8.54 -40.82 -0.35 5.70 16 32 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.12 1.48 7.90 -51.93 -0.41 1.07 16 34 H 0.42 0.86 9.11 45.56 0.42 1.28 16 LS Contribution 299.86 15.07 4.52 4.52 Total: -1.00 -32.32 299.86 -5.13 -37.45 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -2.98 Total: 4.94 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -1.02 Total: 2.42 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.79 Total: -39.06 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -1.42 Total: -25.14 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.32 -5.13 -37.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589463784.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.106 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds