Wall clock time and date at job start Mon Mar 30 2020 01:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40474 * 126.85986 * 2 1 4 4 H 0.97003 * 126.64797 * 0.03815 * 3 2 1 5 5 C 1.35161 * 106.70271 * 180.16720 * 3 2 1 6 6 C 1.50694 * 125.53963 * 179.90891 * 5 3 2 7 7 N 1.46500 * 109.47293 * 179.71612 * 6 5 3 8 8 C 1.36940 * 120.00057 * 270.00182 * 7 6 5 9 9 H 1.08000 * 119.99512 * 188.72867 * 8 7 6 10 10 C 1.38807 * 119.99672 * 8.72668 * 8 7 6 11 11 N 1.31619 * 120.00280 * 24.80092 * 10 8 7 12 12 Si 1.86803 * 119.99573 * 204.79361 * 10 8 7 13 13 H 1.48496 * 109.46964 * 60.00617 * 12 10 8 14 14 H 1.48503 * 109.47001 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47457 * 300.00381 * 12 10 8 16 16 C 1.46501 * 119.99792 * 89.99658 * 7 6 5 17 17 C 1.53005 * 109.46957 * 91.30152 * 16 7 6 18 18 C 1.50702 * 109.47227 * 179.97438 * 17 16 7 19 19 O 1.20823 * 119.99839 * 359.97438 * 18 17 16 20 20 O 1.34227 * 119.99905 * 179.97438 * 18 17 16 21 21 N 1.30733 * 108.91724 * 359.64345 * 5 3 2 22 22 C 1.34443 * 109.94808 * 0.22908 * 21 5 3 23 23 O 1.21726 * 125.92402 * 180.02562 * 22 21 5 24 24 H 1.09000 * 109.47316 * 180.24287 * 1 2 3 25 25 H 1.08996 * 109.47145 * 300.23804 * 1 2 3 26 26 H 1.08997 * 109.47174 * 60.24478 * 1 2 3 27 27 H 1.09001 * 109.47172 * 59.71875 * 6 5 3 28 28 H 1.09000 * 109.47170 * 299.71821 * 6 5 3 29 29 H 0.97003 * 119.99966 * 179.97438 * 11 10 8 30 30 H 1.08996 * 109.47330 * 331.29989 * 16 7 6 31 31 H 1.09003 * 109.47387 * 211.29553 * 16 7 6 32 32 H 1.09005 * 109.47051 * 299.99667 * 17 16 7 33 33 H 1.08996 * 109.47233 * 59.99778 * 17 16 7 34 34 H 0.96705 * 116.99799 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3076 1.1239 0.0000 4 1 2.0322 2.0541 0.0005 5 6 3.5764 0.6582 -0.0038 6 6 4.8213 1.5075 -0.0071 7 7 6.0031 0.6417 -0.0039 8 6 6.5556 0.2416 1.1835 9 1 7.5031 -0.2765 1.1907 10 6 5.8976 0.5021 2.3777 11 7 4.5920 0.6682 2.3871 12 14 6.8654 0.6166 3.9714 13 1 7.8644 1.7102 3.8663 14 1 5.9368 0.9001 5.0950 15 1 7.5641 -0.6699 4.2198 16 6 6.5938 0.2040 -1.2711 17 6 7.6746 1.1983 -1.7004 18 6 8.2827 0.7477 -3.0035 19 8 7.8922 -0.2650 -3.5342 20 8 9.2583 1.4715 -3.5746 21 7 3.5482 -0.6488 0.0017 22 6 2.2748 -1.0801 0.0041 23 8 1.9145 -2.2428 0.0096 24 1 -0.3634 -1.0276 0.0044 25 1 -0.3633 0.5175 0.8878 26 1 -0.3633 0.5100 -0.8921 27 1 4.8319 2.1401 0.8804 28 1 4.8317 2.1333 -0.8995 29 1 4.1322 0.8499 3.2217 30 1 5.8189 0.1569 -2.0361 31 1 7.0385 -0.7829 -1.1430 32 1 7.2300 2.1853 -1.8285 33 1 8.4495 1.2455 -0.9353 34 1 9.6176 1.1423 -4.4099 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601010443.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:54 Heat of formation + Delta-G solvation = 0.695534 kcal Electronic energy + Delta-G solvation = -21138.305966 eV Core-core repulsion = 17689.521620 eV Total energy + Delta-G solvation = -3448.784347 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.06140 -39.91818 -36.70721 -36.04125 -35.66592 -33.20262 -32.19534 -30.48715 -29.97142 -27.68560 -25.40781 -24.83257 -22.08143 -20.79882 -20.28939 -19.81389 -17.84361 -17.60749 -16.92262 -16.24487 -15.69958 -15.62540 -15.10216 -14.83242 -14.50836 -13.80760 -13.58600 -13.33474 -12.99063 -12.77554 -12.47455 -12.39572 -11.92472 -11.65597 -11.32830 -11.24742 -10.95665 -10.73415 -10.45971 -10.26564 -10.16072 -9.99893 -9.89854 -8.95869 -8.65340 -8.60344 -7.55558 -7.25644 -5.97928 -3.25926 2.23955 2.52305 2.69581 3.31889 3.36851 3.42211 3.44204 4.39942 4.56089 4.70301 5.11960 5.22059 5.30768 5.45959 5.46792 5.54913 5.61513 5.71888 5.89746 6.09723 6.22869 6.36615 6.53044 6.69261 6.75543 6.93463 6.94886 7.03473 7.66265 8.03073 8.15144 8.17722 8.94823 9.17165 9.34195 9.62155 10.02682 11.11165 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.007471 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.084623 B = 3746.952807 C = 5294.974462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.465 5.465 3 N -0.520 5.520 4 H 0.429 0.571 5 C 0.445 3.555 6 C 0.231 3.769 7 N -0.560 5.560 8 C -0.249 4.249 9 H 0.084 0.916 10 C 0.005 3.995 11 N -0.899 5.899 12 Si 0.908 3.092 13 H -0.284 1.284 14 H -0.293 1.293 15 H -0.283 1.283 16 C 0.161 3.839 17 C -0.132 4.132 18 C 0.478 3.522 19 O -0.519 6.519 20 O -0.526 6.526 21 N -0.543 5.543 22 C 0.634 3.366 23 O -0.575 6.575 24 H 0.096 0.904 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.116 0.884 28 H 0.054 0.946 29 H 0.255 0.745 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.352 9.965 -7.349 12.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.295 5.295 3 N -0.252 5.252 4 H 0.274 0.726 5 C 0.172 3.828 6 C 0.100 3.900 7 N -0.277 5.277 8 C -0.378 4.378 9 H 0.102 0.898 10 C -0.192 4.192 11 N -0.543 5.543 12 Si 0.738 3.262 13 H -0.210 1.210 14 H -0.220 1.220 15 H -0.210 1.210 16 C 0.033 3.967 17 C -0.173 4.173 18 C 0.320 3.680 19 O -0.407 6.407 20 O -0.337 6.337 21 N -0.290 5.290 22 C 0.335 3.665 23 O -0.451 6.451 24 H 0.115 0.885 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.134 0.866 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.126 0.874 34 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -0.589 8.355 -6.932 10.872 hybrid contribution -0.541 0.687 0.637 1.082 sum -1.130 9.042 -6.295 11.075 Atomic orbital electron populations 1.21555 0.76029 1.04347 1.00945 1.49418 1.03694 1.00871 1.75541 1.45168 1.03126 1.02114 1.74800 0.72626 1.26044 0.84203 0.92351 0.80209 1.19917 0.79383 0.89963 1.00782 1.44021 1.26836 1.54990 1.01811 1.19267 1.01957 1.34033 0.82503 0.89786 1.24689 0.94983 1.01703 0.97867 1.69836 1.05794 1.52528 1.26150 0.86258 0.79123 0.78188 0.82678 1.21040 1.21955 1.20962 1.20567 0.93259 0.94860 0.88001 1.22268 1.01442 1.03436 0.90114 1.24073 0.76018 0.80900 0.86971 1.90713 1.60382 1.25536 1.64084 1.84610 1.51758 1.55933 1.41411 1.71855 1.16131 1.08778 1.32243 1.18794 0.83951 0.84460 0.79344 1.90812 1.79447 1.15315 1.59497 0.88550 0.92309 0.92383 0.86619 0.92827 0.93457 0.93037 0.91806 0.88429 0.87430 0.74146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.59 11.57 59.85 0.69 2.28 16 2 N -0.46 -9.04 4.06 -72.08 -0.29 -9.34 16 3 N -0.52 -8.94 7.36 32.73 0.24 -8.70 16 4 H 0.43 5.31 8.96 -182.31 -1.63 3.67 16 5 C 0.45 9.32 5.95 -155.12 -0.92 8.40 16 6 C 0.23 4.38 5.57 -5.20 -0.03 4.35 16 7 N -0.56 -11.88 2.23 -174.61 -0.39 -12.27 16 8 C -0.25 -6.03 9.70 -15.06 -0.15 -6.17 16 9 H 0.08 2.03 7.94 -52.49 -0.42 1.61 16 10 C 0.01 0.13 4.90 -17.43 -0.09 0.05 16 11 N -0.90 -22.95 9.01 55.49 0.50 -22.45 16 12 Si 0.91 20.31 29.62 -169.99 -5.04 15.27 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 C 0.16 3.02 4.96 -4.04 -0.02 3.00 16 17 C -0.13 -1.93 6.13 -27.88 -0.17 -2.10 16 18 C 0.48 6.92 8.33 36.01 0.30 7.22 16 19 O -0.52 -9.27 16.74 -18.75 -0.31 -9.59 16 20 O -0.53 -5.93 13.42 -39.25 -0.53 -6.45 16 21 N -0.54 -13.98 10.64 -13.83 -0.15 -14.13 16 22 C 0.63 16.13 8.97 -87.02 -0.78 15.35 16 23 O -0.57 -16.35 17.69 5.17 0.09 -16.26 16 24 H 0.10 1.40 7.80 -51.93 -0.41 0.99 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.12 2.30 6.31 -51.93 -0.33 1.97 16 28 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 29 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 30 H 0.05 0.99 8.02 -51.93 -0.42 0.57 16 31 H 0.06 1.34 8.01 -51.93 -0.42 0.92 16 32 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.40 2.78 9.10 45.56 0.41 3.20 16 LS Contribution 303.25 15.07 4.57 4.57 Total: -1.00 -36.36 303.25 -6.91 -43.28 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -4.45 Total: 3.70 kcal Atomic # 6 Polarization: 33.52 SS G_CDS: -1.16 Total: 32.36 kcal Atomic # 7 Polarization: -66.80 SS G_CDS: -0.09 Total: -66.88 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.75 Total: -32.30 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.04 Total: 15.27 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -36.36 -6.91 -43.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601010443.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.971 kcal (2) G-P(sol) polarization free energy of solvation -36.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds