Wall clock time and date at job start Mon Mar 30 2020 01:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40474 * 126.85986 * 2 1 4 4 H 0.97003 * 126.64797 * 0.03815 * 3 2 1 5 5 C 1.35161 * 106.70271 * 180.16720 * 3 2 1 6 6 C 1.50694 * 125.53963 * 179.90891 * 5 3 2 7 7 N 1.46500 * 109.47293 * 179.71612 * 6 5 3 8 8 C 1.36940 * 120.00057 * 270.00182 * 7 6 5 9 9 H 1.08000 * 119.99512 * 188.72867 * 8 7 6 10 10 C 1.38807 * 119.99672 * 8.72668 * 8 7 6 11 11 N 1.31619 * 120.00280 * 24.80092 * 10 8 7 12 12 Si 1.86803 * 119.99573 * 204.79361 * 10 8 7 13 13 H 1.48496 * 109.46964 * 60.00617 * 12 10 8 14 14 H 1.48503 * 109.47001 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47457 * 300.00381 * 12 10 8 16 16 C 1.46501 * 119.99792 * 89.99658 * 7 6 5 17 17 C 1.53005 * 109.46957 * 91.30152 * 16 7 6 18 18 C 1.50702 * 109.47227 * 179.97438 * 17 16 7 19 19 O 1.20823 * 119.99839 * 359.97438 * 18 17 16 20 20 O 1.34227 * 119.99905 * 179.97438 * 18 17 16 21 21 N 1.30733 * 108.91724 * 359.64345 * 5 3 2 22 22 C 1.34443 * 109.94808 * 0.22908 * 21 5 3 23 23 O 1.21726 * 125.92402 * 180.02562 * 22 21 5 24 24 H 1.09000 * 109.47316 * 180.24287 * 1 2 3 25 25 H 1.08996 * 109.47145 * 300.23804 * 1 2 3 26 26 H 1.08997 * 109.47174 * 60.24478 * 1 2 3 27 27 H 1.09001 * 109.47172 * 59.71875 * 6 5 3 28 28 H 1.09000 * 109.47170 * 299.71821 * 6 5 3 29 29 H 0.97003 * 119.99966 * 179.97438 * 11 10 8 30 30 H 1.08996 * 109.47330 * 331.29989 * 16 7 6 31 31 H 1.09003 * 109.47387 * 211.29553 * 16 7 6 32 32 H 1.09005 * 109.47051 * 299.99667 * 17 16 7 33 33 H 1.08996 * 109.47233 * 59.99778 * 17 16 7 34 34 H 0.96705 * 116.99799 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3076 1.1239 0.0000 4 1 2.0322 2.0541 0.0005 5 6 3.5764 0.6582 -0.0038 6 6 4.8213 1.5075 -0.0071 7 7 6.0031 0.6417 -0.0039 8 6 6.5556 0.2416 1.1835 9 1 7.5031 -0.2765 1.1907 10 6 5.8976 0.5021 2.3777 11 7 4.5920 0.6682 2.3871 12 14 6.8654 0.6166 3.9714 13 1 7.8644 1.7102 3.8663 14 1 5.9368 0.9001 5.0950 15 1 7.5641 -0.6699 4.2198 16 6 6.5938 0.2040 -1.2711 17 6 7.6746 1.1983 -1.7004 18 6 8.2827 0.7477 -3.0035 19 8 7.8922 -0.2650 -3.5342 20 8 9.2583 1.4715 -3.5746 21 7 3.5482 -0.6488 0.0017 22 6 2.2748 -1.0801 0.0041 23 8 1.9145 -2.2428 0.0096 24 1 -0.3634 -1.0276 0.0044 25 1 -0.3633 0.5175 0.8878 26 1 -0.3633 0.5100 -0.8921 27 1 4.8319 2.1401 0.8804 28 1 4.8317 2.1333 -0.8995 29 1 4.1322 0.8499 3.2217 30 1 5.8189 0.1569 -2.0361 31 1 7.0385 -0.7829 -1.1430 32 1 7.2300 2.1853 -1.8285 33 1 8.4495 1.2455 -0.9353 34 1 9.6176 1.1423 -4.4099 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601010443.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:53 Heat of formation + Delta-G solvation = -28.705303 kcal Electronic energy + Delta-G solvation = -21139.580882 eV Core-core repulsion = 17689.521620 eV Total energy + Delta-G solvation = -3450.059262 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.73426 -41.07156 -38.40323 -37.63907 -36.91432 -34.72080 -33.85451 -32.17388 -31.45992 -29.18179 -26.93763 -26.33854 -23.59886 -22.36438 -21.87013 -21.28663 -19.17982 -18.95564 -18.58500 -17.51928 -17.21093 -16.89931 -16.75787 -16.51340 -16.23234 -15.45948 -15.16650 -14.82165 -14.28537 -14.06382 -13.90638 -13.58604 -13.56648 -13.15390 -12.92048 -12.64052 -12.41598 -12.33081 -12.11546 -11.88812 -11.75902 -11.66880 -11.46870 -10.66434 -10.42227 -10.32111 -9.23812 -8.98043 -7.84182 -5.10511 0.77191 1.04786 1.38645 1.56484 1.60438 1.64401 2.27135 2.63897 2.84434 3.14366 3.37030 3.58864 4.06990 4.19947 4.26083 4.33948 4.43798 4.64916 4.66203 4.72399 4.84473 4.94218 5.12977 5.19867 5.36435 5.40540 5.46610 5.76799 5.78761 6.27958 6.73738 7.14667 7.17953 7.39374 7.64066 7.87488 8.24481 9.21693 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.007471 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.084623 B = 3746.952807 C = 5294.974462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.457 5.457 3 N -0.489 5.489 4 H 0.456 0.544 5 C 0.445 3.555 6 C 0.230 3.770 7 N -0.571 5.571 8 C -0.249 4.249 9 H 0.076 0.924 10 C -0.036 4.036 11 N -0.912 5.912 12 Si 0.958 3.042 13 H -0.268 1.268 14 H -0.305 1.305 15 H -0.299 1.299 16 C 0.165 3.835 17 C -0.119 4.119 18 C 0.489 3.511 19 O -0.560 6.560 20 O -0.512 6.512 21 N -0.600 5.600 22 C 0.611 3.389 23 O -0.629 6.629 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.244 0.756 30 H 0.045 0.955 31 H 0.030 0.970 32 H 0.128 0.872 33 H 0.112 0.888 34 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.260 12.900 -8.210 15.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.285 5.285 3 N -0.223 5.223 4 H 0.306 0.694 5 C 0.172 3.828 6 C 0.099 3.901 7 N -0.288 5.288 8 C -0.378 4.378 9 H 0.094 0.906 10 C -0.231 4.231 11 N -0.558 5.558 12 Si 0.789 3.211 13 H -0.194 1.194 14 H -0.232 1.232 15 H -0.226 1.226 16 C 0.039 3.961 17 C -0.159 4.159 18 C 0.333 3.667 19 O -0.451 6.451 20 O -0.326 6.326 21 N -0.350 5.350 22 C 0.309 3.691 23 O -0.509 6.509 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.117 0.883 27 H 0.129 0.871 28 H 0.124 0.876 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.146 0.854 33 H 0.131 0.869 34 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -0.507 11.427 -7.835 13.864 hybrid contribution -0.556 -0.168 0.812 0.999 sum -1.063 11.259 -7.022 13.312 Atomic orbital electron populations 1.21973 0.72434 1.04804 1.04223 1.49375 1.05391 1.00287 1.73402 1.45064 1.01990 1.02736 1.72464 0.69434 1.26300 0.85894 0.91387 0.79257 1.20199 0.77523 0.89444 1.02916 1.44163 1.27827 1.55252 1.01547 1.19401 1.01622 1.32973 0.83824 0.90642 1.25154 0.95599 1.02715 0.99665 1.69988 1.06311 1.53991 1.25544 0.85492 0.77983 0.77632 0.80024 1.19383 1.23242 1.22593 1.20469 0.94001 0.94636 0.87027 1.21950 1.00304 1.03200 0.90416 1.23860 0.76007 0.80134 0.86656 1.90720 1.61884 1.27307 1.65210 1.84532 1.50418 1.54968 1.42646 1.71701 1.17438 1.11479 1.34353 1.18856 0.84815 0.84904 0.80481 1.90737 1.80351 1.17488 1.62348 0.89629 0.89606 0.88337 0.87142 0.87591 0.94635 0.93637 0.95180 0.85366 0.86949 0.71569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.68 11.57 127.77 1.48 4.16 16 2 N -0.46 -17.12 4.06 -500.03 -2.03 -19.15 16 3 N -0.49 -15.62 7.36 -50.37 -0.37 -15.99 16 4 H 0.46 9.50 8.96 -213.08 -1.91 7.59 16 5 C 0.45 18.09 5.95 138.02 0.82 18.91 16 6 C 0.23 8.20 5.57 85.63 0.48 8.68 16 7 N -0.57 -23.70 2.23 -706.35 -1.57 -25.28 16 8 C -0.25 -12.00 9.70 84.03 0.82 -11.18 16 9 H 0.08 3.68 7.94 -2.91 -0.02 3.66 16 10 C -0.04 -1.78 4.90 84.86 0.42 -1.36 16 11 N -0.91 -46.48 9.01 21.65 0.19 -46.28 16 12 Si 0.96 41.89 29.62 68.60 2.03 43.93 16 13 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 14 H -0.31 -13.85 7.11 99.48 0.71 -13.15 16 15 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 16 C 0.17 6.13 4.96 86.38 0.43 6.56 16 17 C -0.12 -3.20 6.13 29.85 0.18 -3.01 16 18 C 0.49 13.14 8.33 71.24 0.59 13.73 16 19 O -0.56 -19.58 16.74 21.97 0.37 -19.21 16 20 O -0.51 -9.89 13.42 -51.39 -0.69 -10.58 16 21 N -0.60 -31.29 10.64 -316.05 -3.36 -34.65 16 22 C 0.61 31.56 8.97 179.09 1.61 33.16 16 23 O -0.63 -37.16 17.69 -4.43 -0.08 -37.24 16 24 H 0.09 2.41 7.80 -2.39 -0.02 2.39 16 25 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.11 4.13 6.31 -2.39 -0.02 4.12 16 28 H 0.11 2.65 8.07 -2.39 -0.02 2.63 16 29 H 0.24 12.66 8.31 -92.71 -0.77 11.89 16 30 H 0.05 1.72 8.02 -2.39 -0.02 1.70 16 31 H 0.03 1.29 8.01 -2.39 -0.02 1.27 16 32 H 0.13 2.70 8.14 -2.38 -0.02 2.68 16 33 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 34 H 0.42 4.51 9.10 -74.05 -0.67 3.83 16 Total: -1.00 -82.85 303.25 -0.12 -82.97 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -1.43 Total: 11.85 kcal Atomic # 6 Polarization: 62.83 SS G_CDS: 6.82 Total: 69.65 kcal Atomic # 7 Polarization: -134.22 SS G_CDS: -7.14 Total: -141.36 kcal Atomic # 8 Polarization: -66.64 SS G_CDS: -0.40 Total: -67.04 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.93 kcal Total: -82.85 -0.12 -82.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601010443.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.262 kcal (2) G-P(sol) polarization free energy of solvation -82.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds