Wall clock time and date at job start Mon Mar 30 2020 01:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34421 * 124.35450 * 2 1 4 4 O 1.21283 * 124.93898 * 359.60170 * 3 2 1 5 5 C 1.51278 * 110.11753 * 179.57351 * 3 2 1 6 6 C 1.54630 * 104.19671 * 343.74227 * 5 3 2 7 7 C 1.46765 * 124.34886 * 179.97438 * 2 1 3 8 8 H 1.09009 * 110.24401 * 78.03529 * 7 2 1 9 9 C 1.50695 * 110.24756 * 316.04050 * 7 2 1 10 10 O 1.21289 * 120.00092 * 343.95052 * 9 7 2 11 11 N 1.34775 * 120.00359 * 163.94730 * 9 7 2 12 12 C 1.37098 * 120.00584 * 180.02562 * 11 9 7 13 13 H 1.08008 * 119.99814 * 10.16650 * 12 11 9 14 14 C 1.38948 * 120.00393 * 190.16692 * 12 11 9 15 15 N 1.31411 * 119.99732 * 24.31141 * 14 12 11 16 16 Si 1.86797 * 119.99920 * 204.30670 * 14 12 11 17 17 H 1.48498 * 109.47245 * 60.00447 * 16 14 12 18 18 H 1.48504 * 109.46861 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47258 * 299.99977 * 16 14 12 20 20 C 1.46503 * 120.00093 * 0.02562 * 11 9 7 21 21 C 1.50699 * 109.47400 * 88.39524 * 20 11 9 22 22 O 1.20831 * 119.99620 * 0.02562 * 21 20 11 23 23 O 1.34227 * 120.00327 * 180.02562 * 21 20 11 24 24 H 1.09007 * 109.46884 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47409 * 119.97688 * 1 2 3 26 26 H 1.09002 * 109.47257 * 239.97735 * 1 2 3 27 27 H 1.09006 * 110.48525 * 225.07155 * 5 3 2 28 28 H 1.08996 * 110.60285 * 102.47942 * 5 3 2 29 29 H 1.08997 * 110.96721 * 142.92033 * 6 5 3 30 30 H 1.08997 * 110.97201 * 266.68073 * 6 5 3 31 31 H 0.97005 * 119.99856 * 179.97438 * 15 14 12 32 32 H 1.08997 * 109.47149 * 208.40351 * 20 11 9 33 33 H 1.09010 * 109.46648 * 328.39829 * 20 11 9 34 34 H 0.96699 * 117.00321 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2235 1.1097 0.0000 4 8 1.7947 2.2442 -0.0069 5 6 3.6898 0.7377 0.0106 6 6 3.7008 -0.7487 0.4366 7 6 2.2930 -1.2117 0.0005 8 1 2.3308 -1.6432 -0.9998 9 6 1.7470 -2.2161 0.9824 10 8 0.9518 -1.8663 1.8287 11 7 2.1423 -3.5030 0.9201 12 6 1.6453 -4.4169 1.8130 13 1 0.8204 -4.1493 2.4569 14 6 2.2026 -5.6874 1.8898 15 7 3.4428 -5.8853 1.5032 16 14 1.1888 -7.1141 2.5426 17 1 -0.0117 -7.3001 1.6886 18 1 2.0075 -8.3529 2.5230 19 1 0.7650 -6.8236 3.9358 20 6 3.1033 -3.9256 -0.1018 21 6 4.5049 -3.7474 0.4223 22 8 4.6829 -3.3125 1.5356 23 8 5.5557 -4.0717 -0.3474 24 1 -0.3633 1.0277 0.0005 25 1 -0.3634 -0.5135 -0.8902 26 1 -0.3634 -0.5142 0.8898 27 1 4.2325 1.3459 0.7343 28 1 4.1219 0.8529 -0.9834 29 1 4.4754 -1.3011 -0.0954 30 1 3.8264 -0.8445 1.5150 31 1 3.8320 -6.7722 1.5571 32 1 2.9370 -4.9749 -0.3452 33 1 2.9707 -3.3192 -0.9980 34 1 6.4352 -3.9403 0.0323 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606185630.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:34 Heat of formation + Delta-G solvation = -132.409578 kcal Electronic energy + Delta-G solvation = -22142.110986 eV Core-core repulsion = 18655.262018 eV Total energy + Delta-G solvation = -3486.848968 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.54235 -39.30948 -38.11125 -35.93586 -35.29240 -34.58820 -32.55961 -31.83169 -28.34154 -27.66112 -26.26472 -24.79233 -22.15336 -21.28639 -19.91022 -18.66840 -17.36139 -17.29165 -16.89584 -16.25092 -15.70871 -15.57024 -15.13200 -14.60153 -14.45349 -14.06055 -13.67053 -13.57464 -13.09991 -12.95532 -12.42248 -12.12672 -12.08606 -11.88016 -11.77680 -11.51486 -11.28928 -11.04338 -10.86438 -10.58599 -10.47253 -10.39912 -9.76566 -9.58734 -9.16473 -9.06175 -8.19373 -8.04137 -6.62621 -4.01352 2.81692 3.03611 3.15772 3.18077 3.27904 3.30476 3.46718 3.90540 4.09654 4.48629 4.54879 4.75712 4.88542 5.08081 5.22757 5.33594 5.52710 5.66270 5.75374 5.82913 5.91326 5.99332 6.27414 6.32894 6.35141 6.45576 6.73002 7.36927 7.37429 7.41878 7.77840 8.18868 8.43016 8.89699 8.91780 9.12797 9.62931 10.45476 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.023486 B = 0.007431 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.911397 B = 3767.189050 C = 4678.869158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.591 5.591 3 C 0.518 3.482 4 O -0.546 6.546 5 C -0.153 4.153 6 C -0.115 4.115 7 C 0.114 3.886 8 H 0.090 0.910 9 C 0.448 3.552 10 O -0.564 6.564 11 N -0.421 5.421 12 C -0.307 4.307 13 H 0.111 0.889 14 C 0.033 3.967 15 N -0.877 5.877 16 Si 0.930 3.070 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.138 3.862 21 C 0.491 3.509 22 O -0.501 6.501 23 O -0.534 6.534 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.274 0.726 32 H 0.132 0.868 33 H 0.078 0.922 34 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.155 2.401 -7.796 8.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.324 5.324 3 C 0.306 3.694 4 O -0.425 6.425 5 C -0.193 4.193 6 C -0.154 4.154 7 C 0.006 3.994 8 H 0.108 0.892 9 C 0.235 3.765 10 O -0.447 6.447 11 N -0.141 5.141 12 C -0.434 4.434 13 H 0.129 0.871 14 C -0.171 4.171 15 N -0.517 5.517 16 Si 0.756 3.244 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.197 1.197 20 C 0.012 3.988 21 C 0.331 3.669 22 O -0.386 6.386 23 O -0.345 6.345 24 H 0.093 0.907 25 H 0.072 0.928 26 H 0.107 0.893 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.150 0.850 33 H 0.096 0.904 34 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.191 3.047 -7.216 8.134 hybrid contribution 0.486 -1.041 0.620 1.305 sum 2.677 2.006 -6.597 7.396 Atomic orbital electron populations 1.21738 0.77731 1.02882 1.03031 1.47793 1.06817 1.05958 1.71822 1.20815 0.89310 0.84194 0.75099 1.90672 1.78889 1.20976 1.51939 1.22358 0.94871 0.97707 1.04399 1.22607 0.94339 0.94303 1.04113 1.21666 0.91399 0.86682 0.99617 0.89210 1.19866 0.86981 0.82190 0.87436 1.90514 1.37494 1.77672 1.38982 1.43519 1.35926 1.06544 1.28088 1.19716 1.14960 0.90486 1.18201 0.87114 1.25211 0.95045 0.99367 0.97437 1.69773 1.10739 1.23729 1.47454 0.85920 0.79472 0.79387 0.79572 1.19720 1.20918 1.19742 1.20863 0.83304 1.04848 0.89826 1.23655 0.87144 0.72379 0.83720 1.90627 1.85691 1.42454 1.19799 1.84520 1.18054 1.81687 1.50284 0.90702 0.92772 0.89338 0.88013 0.87880 0.89576 0.88693 0.91556 0.85050 0.90422 0.75027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.47 10.49 59.84 0.63 2.10 16 2 N -0.59 -10.57 3.01 -174.02 -0.52 -11.09 16 3 C 0.52 9.21 8.02 -10.86 -0.09 9.12 16 4 O -0.55 -11.21 17.35 5.55 0.10 -11.12 16 5 C -0.15 -2.13 6.86 -26.74 -0.18 -2.31 16 6 C -0.12 -1.82 5.02 -25.10 -0.13 -1.95 16 7 C 0.11 2.00 2.89 -68.16 -0.20 1.80 16 8 H 0.09 1.32 6.47 -51.92 -0.34 0.99 16 9 C 0.45 10.01 6.51 -10.99 -0.07 9.94 16 10 O -0.56 -14.51 13.93 5.55 0.08 -14.43 16 11 N -0.42 -9.72 2.12 -116.09 -0.25 -9.96 16 12 C -0.31 -7.89 9.41 -14.93 -0.14 -8.03 16 13 H 0.11 3.03 7.32 -52.48 -0.38 2.64 16 14 C 0.03 0.79 4.89 -17.47 -0.09 0.71 16 15 N -0.88 -21.34 9.06 55.50 0.50 -20.84 16 16 Si 0.93 19.42 29.62 -169.99 -5.03 14.38 16 17 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 18 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 20 C 0.14 2.69 4.98 -5.19 -0.03 2.66 16 21 C 0.49 9.63 4.44 36.01 0.16 9.79 16 22 O -0.50 -11.60 15.73 -18.75 -0.29 -11.90 16 23 O -0.53 -8.42 13.42 -39.25 -0.53 -8.94 16 24 H 0.07 1.20 7.53 -51.92 -0.39 0.81 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.09 1.68 6.08 -51.93 -0.32 1.37 16 27 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.09 1.20 6.69 -51.93 -0.35 0.86 16 30 H 0.09 1.78 7.65 -51.93 -0.40 1.38 16 31 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 32 H 0.13 2.70 6.29 -51.93 -0.33 2.37 16 33 H 0.08 1.19 6.07 -51.92 -0.32 0.87 16 34 H 0.39 4.64 9.10 45.56 0.41 5.05 16 LS Contribution 285.00 15.07 4.29 4.29 Total: -1.00 -32.86 285.00 -4.58 -37.45 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -2.80 Total: 8.32 kcal Atomic # 6 Polarization: 23.96 SS G_CDS: -0.13 Total: 23.84 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: -0.27 Total: -41.89 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: -0.65 Total: -46.39 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.86 -4.58 -37.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606185630.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.961 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds