Wall clock time and date at job start Mon Mar 30 2020 01:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34421 * 124.35450 * 2 1 4 4 O 1.21283 * 124.93898 * 359.60170 * 3 2 1 5 5 C 1.51278 * 110.11753 * 179.57351 * 3 2 1 6 6 C 1.54630 * 104.19671 * 343.74227 * 5 3 2 7 7 C 1.46765 * 124.34886 * 179.97438 * 2 1 3 8 8 H 1.09009 * 110.24401 * 78.03529 * 7 2 1 9 9 C 1.50695 * 110.24756 * 316.04050 * 7 2 1 10 10 O 1.21289 * 120.00092 * 343.95052 * 9 7 2 11 11 N 1.34775 * 120.00359 * 163.94730 * 9 7 2 12 12 C 1.37098 * 120.00584 * 180.02562 * 11 9 7 13 13 H 1.08008 * 119.99814 * 10.16650 * 12 11 9 14 14 C 1.38948 * 120.00393 * 190.16692 * 12 11 9 15 15 N 1.31411 * 119.99732 * 24.31141 * 14 12 11 16 16 Si 1.86797 * 119.99920 * 204.30670 * 14 12 11 17 17 H 1.48498 * 109.47245 * 60.00447 * 16 14 12 18 18 H 1.48504 * 109.46861 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47258 * 299.99977 * 16 14 12 20 20 C 1.46503 * 120.00093 * 0.02562 * 11 9 7 21 21 C 1.50699 * 109.47400 * 88.39524 * 20 11 9 22 22 O 1.20831 * 119.99620 * 0.02562 * 21 20 11 23 23 O 1.34227 * 120.00327 * 180.02562 * 21 20 11 24 24 H 1.09007 * 109.46884 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47409 * 119.97688 * 1 2 3 26 26 H 1.09002 * 109.47257 * 239.97735 * 1 2 3 27 27 H 1.09006 * 110.48525 * 225.07155 * 5 3 2 28 28 H 1.08996 * 110.60285 * 102.47942 * 5 3 2 29 29 H 1.08997 * 110.96721 * 142.92033 * 6 5 3 30 30 H 1.08997 * 110.97201 * 266.68073 * 6 5 3 31 31 H 0.97005 * 119.99856 * 179.97438 * 15 14 12 32 32 H 1.08997 * 109.47149 * 208.40351 * 20 11 9 33 33 H 1.09010 * 109.46648 * 328.39829 * 20 11 9 34 34 H 0.96699 * 117.00321 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2235 1.1097 0.0000 4 8 1.7947 2.2442 -0.0069 5 6 3.6898 0.7377 0.0106 6 6 3.7008 -0.7487 0.4366 7 6 2.2930 -1.2117 0.0005 8 1 2.3308 -1.6432 -0.9998 9 6 1.7470 -2.2161 0.9824 10 8 0.9518 -1.8663 1.8287 11 7 2.1423 -3.5030 0.9201 12 6 1.6453 -4.4169 1.8130 13 1 0.8204 -4.1493 2.4569 14 6 2.2026 -5.6874 1.8898 15 7 3.4428 -5.8853 1.5032 16 14 1.1888 -7.1141 2.5426 17 1 -0.0117 -7.3001 1.6886 18 1 2.0075 -8.3529 2.5230 19 1 0.7650 -6.8236 3.9358 20 6 3.1033 -3.9256 -0.1018 21 6 4.5049 -3.7474 0.4223 22 8 4.6829 -3.3125 1.5356 23 8 5.5557 -4.0717 -0.3474 24 1 -0.3633 1.0277 0.0005 25 1 -0.3634 -0.5135 -0.8902 26 1 -0.3634 -0.5142 0.8898 27 1 4.2325 1.3459 0.7343 28 1 4.1219 0.8529 -0.9834 29 1 4.4754 -1.3011 -0.0954 30 1 3.8264 -0.8445 1.5150 31 1 3.8320 -6.7722 1.5571 32 1 2.9370 -4.9749 -0.3452 33 1 2.9707 -3.3192 -0.9980 34 1 6.4352 -3.9403 0.0323 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606185630.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:34 Heat of formation + Delta-G solvation = -156.824804 kcal Electronic energy + Delta-G solvation = -22143.169710 eV Core-core repulsion = 18655.262018 eV Total energy + Delta-G solvation = -3487.907692 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.00577 -40.80815 -39.72297 -37.44027 -36.85487 -36.24685 -34.03996 -33.47411 -29.89184 -29.18835 -27.59924 -26.53605 -23.51730 -22.79230 -21.44594 -20.12406 -19.01222 -18.84307 -18.43360 -17.66875 -17.20335 -17.11958 -16.68744 -16.15667 -16.06972 -15.66033 -15.29558 -14.82369 -14.60078 -14.48878 -13.84986 -13.60454 -13.47971 -13.42841 -13.32504 -12.98316 -12.71495 -12.63297 -12.35262 -12.15903 -12.09211 -11.98172 -11.45223 -10.99939 -10.89685 -10.70319 -9.94201 -9.61205 -8.47322 -5.92706 1.35022 1.42752 1.46534 1.53856 1.70019 1.87202 1.96432 2.26977 2.56997 2.86219 3.07259 3.31982 3.44284 3.75292 3.85643 3.99001 4.29845 4.37622 4.42927 4.62695 4.72821 4.80912 4.85737 4.94380 5.00198 5.04166 5.35925 5.46016 5.90477 6.06395 6.09000 6.36365 7.03954 7.09468 7.28945 7.53468 7.87619 8.57963 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.023486 B = 0.007431 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.911397 B = 3767.189050 C = 4678.869158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.599 5.599 3 C 0.508 3.492 4 O -0.580 6.580 5 C -0.137 4.137 6 C -0.107 4.107 7 C 0.120 3.880 8 H 0.130 0.870 9 C 0.439 3.561 10 O -0.612 6.612 11 N -0.431 5.431 12 C -0.342 4.342 13 H 0.078 0.922 14 C 0.008 3.992 15 N -0.883 5.883 16 Si 0.986 3.014 17 H -0.264 1.264 18 H -0.272 1.272 19 H -0.285 1.285 20 C 0.132 3.868 21 C 0.499 3.501 22 O -0.542 6.542 23 O -0.518 6.518 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.114 0.886 28 H 0.146 0.854 29 H 0.112 0.888 30 H 0.058 0.942 31 H 0.277 0.723 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.719 1.930 -9.966 11.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.331 5.331 3 C 0.298 3.702 4 O -0.461 6.461 5 C -0.176 4.176 6 C -0.146 4.146 7 C 0.013 3.987 8 H 0.147 0.853 9 C 0.228 3.772 10 O -0.498 6.498 11 N -0.150 5.150 12 C -0.470 4.470 13 H 0.096 0.904 14 C -0.194 4.194 15 N -0.521 5.521 16 Si 0.810 3.190 17 H -0.189 1.189 18 H -0.197 1.197 19 H -0.211 1.211 20 C 0.007 3.993 21 C 0.341 3.659 22 O -0.430 6.430 23 O -0.331 6.331 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.077 0.923 27 H 0.132 0.868 28 H 0.164 0.836 29 H 0.130 0.870 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 3.808 2.544 -9.432 10.486 hybrid contribution 0.039 -0.919 1.305 1.596 sum 3.847 1.625 -8.128 9.138 Atomic orbital electron populations 1.21706 0.77811 1.02981 1.02860 1.47999 1.07190 1.06339 1.71560 1.21509 0.90976 0.83555 0.74133 1.90654 1.79816 1.22154 1.53456 1.22401 0.92144 0.95943 1.07124 1.22545 0.93742 0.96061 1.02231 1.21759 0.91772 0.85320 0.99898 0.85263 1.20751 0.85991 0.82714 0.87763 1.90489 1.39463 1.78607 1.41216 1.43607 1.36617 1.06541 1.28221 1.19539 1.15465 0.92259 1.19694 0.90408 1.25801 0.95761 1.00479 0.97396 1.69839 1.10992 1.24148 1.47145 0.85112 0.78578 0.77060 0.78264 1.18880 1.19666 1.21130 1.21046 0.82727 1.05226 0.90333 1.23543 0.87870 0.71387 0.83063 1.90633 1.86375 1.44435 1.21593 1.84447 1.18666 1.80709 1.49261 0.90420 0.90174 0.92267 0.86780 0.83624 0.87015 0.92290 0.91260 0.86068 0.85686 0.72606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.95 10.49 127.77 1.34 4.29 16 2 N -0.60 -20.68 3.01 -823.07 -2.48 -23.16 16 3 C 0.51 17.20 8.02 87.90 0.71 17.90 16 4 O -0.58 -23.25 17.35 -3.04 -0.05 -23.31 16 5 C -0.14 -3.32 6.86 30.59 0.21 -3.11 16 6 C -0.11 -3.13 5.02 31.65 0.16 -2.97 16 7 C 0.12 3.95 2.89 44.70 0.13 4.08 16 8 H 0.13 3.25 6.47 -2.38 -0.02 3.23 16 9 C 0.44 19.75 6.51 87.66 0.57 20.32 16 10 O -0.61 -32.89 13.93 -3.06 -0.04 -32.93 16 11 N -0.43 -19.89 2.12 -639.59 -1.36 -21.24 16 12 C -0.34 -18.06 9.41 84.04 0.79 -17.27 16 13 H 0.08 4.52 7.32 -2.91 -0.02 4.49 16 14 C 0.01 0.40 4.89 84.93 0.42 0.82 16 15 N -0.88 -42.13 9.06 21.66 0.20 -41.93 16 16 Si 0.99 39.81 29.62 68.60 2.03 41.85 16 17 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 18 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 19 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 20 C 0.13 4.86 4.98 85.63 0.43 5.29 16 21 C 0.50 18.45 4.44 71.24 0.32 18.77 16 22 O -0.54 -24.58 15.73 21.95 0.35 -24.24 16 23 O -0.52 -14.45 13.42 -51.39 -0.69 -15.14 16 24 H 0.08 2.50 7.53 -2.38 -0.02 2.49 16 25 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 26 H 0.06 2.35 6.08 -2.39 -0.01 2.33 16 27 H 0.11 2.57 8.14 -2.38 -0.02 2.55 16 28 H 0.15 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.11 2.67 6.69 -2.39 -0.02 2.65 16 30 H 0.06 2.18 7.65 -2.39 -0.02 2.16 16 31 H 0.28 12.59 8.31 -92.70 -0.77 11.82 16 32 H 0.12 4.76 6.29 -2.39 -0.02 4.74 16 33 H 0.13 3.30 6.07 -2.38 -0.01 3.29 16 34 H 0.41 8.23 9.10 -74.06 -0.67 7.55 16 Total: -1.00 -74.23 285.00 3.50 -70.73 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.49 Total: 21.25 kcal Atomic # 6 Polarization: 43.05 SS G_CDS: 5.06 Total: 48.12 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -3.64 Total: -86.33 kcal Atomic # 8 Polarization: -95.17 SS G_CDS: -0.44 Total: -95.61 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.85 kcal Total: -74.23 3.50 -70.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606185630.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.095 kcal (2) G-P(sol) polarization free energy of solvation -74.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds