Wall clock time and date at job start Mon Mar 30 2020 01:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21278 * 120.00436 * 2 1 4 4 N 1.34784 * 119.99579 * 179.97438 * 2 1 3 5 5 C 1.47068 * 136.05936 * 359.63581 * 4 2 1 6 6 C 1.53757 * 87.88644 * 152.95945 * 5 4 2 7 7 C 1.50699 * 114.26334 * 139.78870 * 6 5 4 8 8 O 1.21293 * 120.00323 * 266.47228 * 7 6 5 9 9 N 1.34774 * 119.99706 * 86.47825 * 7 6 5 10 10 C 1.37103 * 120.00131 * 179.97438 * 9 7 6 11 11 H 1.07998 * 119.99941 * 16.50280 * 10 9 7 12 12 C 1.38952 * 120.00125 * 196.49947 * 10 9 7 13 13 N 1.31408 * 120.00078 * 21.65170 * 12 10 9 14 14 Si 1.86796 * 120.00019 * 201.64735 * 12 10 9 15 15 H 1.48497 * 109.47201 * 90.00024 * 14 12 10 16 16 H 1.48502 * 109.47189 * 210.00573 * 14 12 10 17 17 H 1.48504 * 109.47214 * 330.00309 * 14 12 10 18 18 C 1.46506 * 120.00142 * 359.97438 * 9 7 6 19 19 C 1.50696 * 109.47302 * 84.07680 * 18 9 7 20 20 O 1.20831 * 119.99866 * 359.97438 * 19 18 9 21 21 O 1.34232 * 120.00180 * 180.02562 * 19 18 9 22 22 C 1.47069 * 136.05391 * 180.02562 * 4 2 1 23 23 H 1.08992 * 109.47813 * 240.00318 * 1 2 3 24 24 H 1.09000 * 109.47142 * 120.00361 * 1 2 3 25 25 H 1.09003 * 109.46931 * 0.02562 * 1 2 3 26 26 H 1.08999 * 113.46417 * 267.69404 * 5 4 2 27 27 H 1.09001 * 113.46581 * 38.13031 * 5 4 2 28 28 H 1.08999 * 114.39482 * 272.67488 * 6 5 4 29 29 H 0.96992 * 120.00072 * 179.97438 * 13 12 10 30 30 H 1.09004 * 109.46762 * 204.07545 * 18 9 7 31 31 H 1.08995 * 109.46927 * 324.07092 * 18 9 7 32 32 H 0.96701 * 116.99958 * 179.97438 * 21 19 18 33 33 H 1.09003 * 113.46871 * 321.86470 * 22 4 2 34 34 H 1.09000 * 113.46716 * 92.24896 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.8264 -2.5946 0.0076 6 6 3.1645 -2.8720 -0.6973 7 6 3.8797 -4.1039 -0.2056 8 8 4.7142 -4.0120 0.6699 9 7 3.5924 -5.3078 -0.7389 10 6 4.2434 -6.4286 -0.2921 11 1 4.7780 -6.4046 0.6460 12 6 4.2155 -7.5954 -1.0461 13 7 3.9577 -7.5398 -2.3334 14 14 4.5444 -9.2431 -0.2298 15 1 3.2645 -9.8199 0.2542 16 1 5.1638 -10.1677 -1.2130 17 1 5.4665 -9.0514 0.9184 18 6 2.5842 -5.4190 -1.7961 19 6 3.2192 -5.1190 -3.1294 20 8 4.3934 -4.8405 -3.1903 21 8 2.4803 -5.1603 -4.2492 22 6 3.5941 -1.5741 0.0012 23 1 -0.3634 -0.5137 0.8899 24 1 -0.3633 -0.5139 -0.8899 25 1 -0.3633 1.0277 -0.0005 26 1 1.7664 -3.0219 1.0086 27 1 0.9551 -2.8286 -0.6041 28 1 3.1235 -2.8024 -1.7843 29 1 3.9385 -8.3542 -2.8598 30 1 2.1784 -6.4306 -1.8062 31 1 1.7806 -4.7071 -1.6080 32 1 2.9317 -4.9601 -5.0807 33 1 4.2291 -0.9386 -0.6162 34 1 4.0000 -1.7317 1.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609584367.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:27 Heat of formation + Delta-G solvation = -105.765126 kcal Electronic energy + Delta-G solvation = -21428.743053 eV Core-core repulsion = 17943.049475 eV Total energy + Delta-G solvation = -3485.693578 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.57822 -39.33248 -38.35191 -37.06843 -35.32402 -34.59256 -31.93108 -31.01611 -28.67611 -27.77447 -25.80819 -25.28956 -22.76140 -21.17563 -19.08341 -18.72435 -17.30366 -17.11877 -16.83731 -16.78944 -15.84545 -15.53739 -15.39470 -14.68914 -14.56178 -14.17064 -13.91762 -13.33442 -12.99988 -12.71079 -12.49168 -12.36647 -12.21836 -12.01704 -11.76384 -11.67457 -11.56464 -11.04064 -10.62252 -10.52312 -10.46461 -10.35417 -9.86793 -9.75277 -9.16009 -8.83565 -8.50188 -8.04623 -6.56770 -4.01088 2.65710 2.90543 3.04699 3.18775 3.23565 3.30133 3.45967 3.93776 4.10897 4.45130 4.57170 4.63112 4.98084 5.04892 5.13589 5.26158 5.35867 5.40542 5.54232 5.63935 5.71834 5.74963 5.85303 5.95603 6.28975 6.33388 6.45699 7.38762 7.44710 7.77446 7.85886 8.18035 8.23367 8.90972 8.95624 9.17259 9.68387 10.52021 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.025212 B = 0.005755 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.294847 B = 4863.904649 C = 5404.705515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.538 3.462 3 O -0.553 6.553 4 N -0.648 5.648 5 C 0.115 3.885 6 C -0.145 4.145 7 C 0.471 3.529 8 O -0.569 6.569 9 N -0.425 5.425 10 C -0.308 4.308 11 H 0.110 0.890 12 C 0.031 3.969 13 N -0.879 5.879 14 Si 0.931 3.069 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.268 1.268 18 C 0.146 3.854 19 C 0.487 3.513 20 O -0.502 6.502 21 O -0.535 6.535 22 C 0.128 3.872 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.110 0.890 29 H 0.272 0.728 30 H 0.130 0.870 31 H 0.077 0.923 32 H 0.393 0.607 33 H 0.078 0.922 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.541 4.334 -0.765 11.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.328 3.672 3 O -0.432 6.432 4 N -0.384 5.384 5 C -0.009 4.009 6 C -0.167 4.167 7 C 0.259 3.741 8 O -0.452 6.452 9 N -0.144 5.144 10 C -0.435 4.435 11 H 0.128 0.872 12 C -0.172 4.172 13 N -0.519 5.519 14 Si 0.757 3.243 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.193 1.193 18 C 0.019 3.981 19 C 0.327 3.673 20 O -0.387 6.387 21 O -0.346 6.346 22 C 0.005 3.995 23 H 0.105 0.895 24 H 0.106 0.894 25 H 0.109 0.891 26 H 0.113 0.887 27 H 0.102 0.898 28 H 0.128 0.872 29 H 0.083 0.917 30 H 0.148 0.852 31 H 0.095 0.905 32 H 0.250 0.750 33 H 0.097 0.903 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.796 4.996 -0.106 10.997 hybrid contribution 0.503 -0.965 -0.663 1.274 sum -9.293 4.031 -0.769 10.159 Atomic orbital electron populations 1.21849 0.91335 1.05122 1.04294 1.20353 0.90065 0.81340 0.75404 1.90712 1.70963 1.30408 1.51077 1.49741 1.10229 1.05495 1.72969 1.23078 0.97338 0.79082 1.01369 1.23081 0.96871 0.95510 1.01245 1.19434 0.85265 0.83007 0.86410 1.90552 1.35689 1.85028 1.33951 1.43436 1.34037 1.06286 1.30637 1.19758 1.31876 0.86209 1.05611 0.87218 1.25256 0.97045 1.00388 0.94555 1.69795 1.48101 1.29370 1.04612 0.85842 0.78669 0.80723 0.79035 1.20186 1.21066 1.19278 1.20706 0.89985 1.04959 0.82433 1.23832 0.85747 0.71774 0.85976 1.90635 1.17105 1.44214 1.86709 1.84515 1.47390 1.84475 1.18189 1.22812 0.83159 0.91565 1.01950 0.89478 0.89419 0.89067 0.88715 0.89818 0.87178 0.91731 0.85247 0.90524 0.75020 0.90342 0.88074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 10.15 36.01 0.37 -1.20 16 2 C 0.54 7.93 8.19 -10.98 -0.09 7.84 16 3 O -0.55 -10.50 17.86 5.56 0.10 -10.40 16 4 N -0.65 -9.55 3.69 -185.02 -0.68 -10.23 16 5 C 0.11 1.50 7.45 -8.36 -0.06 1.44 16 6 C -0.14 -2.46 3.10 -91.11 -0.28 -2.74 16 7 C 0.47 10.47 6.99 -10.99 -0.08 10.40 16 8 O -0.57 -14.63 15.59 5.55 0.09 -14.54 16 9 N -0.43 -9.83 2.18 -116.09 -0.25 -10.09 16 10 C -0.31 -7.92 9.34 -14.93 -0.14 -8.06 16 11 H 0.11 2.98 7.37 -52.49 -0.39 2.60 16 12 C 0.03 0.76 4.87 -17.47 -0.09 0.67 16 13 N -0.88 -21.89 9.28 55.50 0.52 -21.37 16 14 Si 0.93 19.47 29.60 -169.99 -5.03 14.44 16 15 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 16 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 18 C 0.15 2.86 4.91 -5.19 -0.03 2.83 16 19 C 0.49 10.03 5.71 36.00 0.21 10.24 16 20 O -0.50 -12.42 16.79 -18.75 -0.31 -12.74 16 21 O -0.53 -8.86 13.42 -39.26 -0.53 -9.38 16 22 C 0.13 2.13 7.96 -8.49 -0.07 2.07 16 23 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.09 0.80 8.12 -51.93 -0.42 0.38 16 26 H 0.09 1.21 8.10 -51.93 -0.42 0.79 16 27 H 0.08 0.83 7.89 -51.93 -0.41 0.42 16 28 H 0.11 1.86 7.15 -51.93 -0.37 1.49 16 29 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 30 H 0.13 2.66 6.37 -51.93 -0.33 2.33 16 31 H 0.08 1.16 6.41 -51.93 -0.33 0.82 16 32 H 0.39 4.99 9.10 45.56 0.41 5.40 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.10 1.77 7.46 -51.93 -0.39 1.39 16 LS Contribution 299.11 15.07 4.51 4.51 Total: -1.00 -34.35 299.11 -4.91 -39.26 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -3.05 Total: 7.07 kcal Atomic # 6 Polarization: 23.73 SS G_CDS: -0.26 Total: 23.47 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: -0.42 Total: -41.69 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -0.66 Total: -47.07 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.35 -4.91 -39.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609584367.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.504 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds