Wall clock time and date at job start Mon Mar 30 2020 01:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21278 * 120.00436 * 2 1 4 4 N 1.34784 * 119.99579 * 179.97438 * 2 1 3 5 5 C 1.47068 * 136.05936 * 359.63581 * 4 2 1 6 6 C 1.53757 * 87.88644 * 152.95945 * 5 4 2 7 7 C 1.50699 * 114.26334 * 139.78870 * 6 5 4 8 8 O 1.21293 * 120.00323 * 266.47228 * 7 6 5 9 9 N 1.34774 * 119.99706 * 86.47825 * 7 6 5 10 10 C 1.37103 * 120.00131 * 179.97438 * 9 7 6 11 11 H 1.07998 * 119.99941 * 16.50280 * 10 9 7 12 12 C 1.38952 * 120.00125 * 196.49947 * 10 9 7 13 13 N 1.31408 * 120.00078 * 21.65170 * 12 10 9 14 14 Si 1.86796 * 120.00019 * 201.64735 * 12 10 9 15 15 H 1.48497 * 109.47201 * 90.00024 * 14 12 10 16 16 H 1.48502 * 109.47189 * 210.00573 * 14 12 10 17 17 H 1.48504 * 109.47214 * 330.00309 * 14 12 10 18 18 C 1.46506 * 120.00142 * 359.97438 * 9 7 6 19 19 C 1.50696 * 109.47302 * 84.07680 * 18 9 7 20 20 O 1.20831 * 119.99866 * 359.97438 * 19 18 9 21 21 O 1.34232 * 120.00180 * 180.02562 * 19 18 9 22 22 C 1.47069 * 136.05391 * 180.02562 * 4 2 1 23 23 H 1.08992 * 109.47813 * 240.00318 * 1 2 3 24 24 H 1.09000 * 109.47142 * 120.00361 * 1 2 3 25 25 H 1.09003 * 109.46931 * 0.02562 * 1 2 3 26 26 H 1.08999 * 113.46417 * 267.69404 * 5 4 2 27 27 H 1.09001 * 113.46581 * 38.13031 * 5 4 2 28 28 H 1.08999 * 114.39482 * 272.67488 * 6 5 4 29 29 H 0.96992 * 120.00072 * 179.97438 * 13 12 10 30 30 H 1.09004 * 109.46762 * 204.07545 * 18 9 7 31 31 H 1.08995 * 109.46927 * 324.07092 * 18 9 7 32 32 H 0.96701 * 116.99958 * 179.97438 * 21 19 18 33 33 H 1.09003 * 113.46871 * 321.86470 * 22 4 2 34 34 H 1.09000 * 113.46716 * 92.24896 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.8264 -2.5946 0.0076 6 6 3.1645 -2.8720 -0.6973 7 6 3.8797 -4.1039 -0.2056 8 8 4.7142 -4.0120 0.6699 9 7 3.5924 -5.3078 -0.7389 10 6 4.2434 -6.4286 -0.2921 11 1 4.7780 -6.4046 0.6460 12 6 4.2155 -7.5954 -1.0461 13 7 3.9577 -7.5398 -2.3334 14 14 4.5444 -9.2431 -0.2298 15 1 3.2645 -9.8199 0.2542 16 1 5.1638 -10.1677 -1.2130 17 1 5.4665 -9.0514 0.9184 18 6 2.5842 -5.4190 -1.7961 19 6 3.2192 -5.1190 -3.1294 20 8 4.3934 -4.8405 -3.1903 21 8 2.4803 -5.1603 -4.2492 22 6 3.5941 -1.5741 0.0012 23 1 -0.3634 -0.5137 0.8899 24 1 -0.3633 -0.5139 -0.8899 25 1 -0.3633 1.0277 -0.0005 26 1 1.7664 -3.0219 1.0086 27 1 0.9551 -2.8286 -0.6041 28 1 3.1235 -2.8024 -1.7843 29 1 3.9385 -8.3542 -2.8598 30 1 2.1784 -6.4306 -1.8062 31 1 1.7806 -4.7071 -1.6080 32 1 2.9317 -4.9601 -5.0807 33 1 4.2291 -0.9386 -0.6162 34 1 4.0000 -1.7317 1.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609584367.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:26 Heat of formation + Delta-G solvation = -132.031827 kcal Electronic energy + Delta-G solvation = -21429.882063 eV Core-core repulsion = 17943.049475 eV Total energy + Delta-G solvation = -3486.832588 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.95187 -40.84718 -39.85355 -38.49089 -36.96011 -36.32208 -33.76324 -32.15017 -29.85941 -29.33366 -27.03925 -26.93809 -24.24127 -22.72883 -20.55964 -19.99772 -19.02073 -18.69534 -18.39542 -17.98781 -17.39020 -16.95322 -16.71639 -16.22455 -16.04636 -15.81376 -15.46911 -14.83568 -14.26509 -13.96741 -13.74258 -13.62085 -13.53414 -13.28847 -13.24263 -13.16766 -12.92389 -12.61857 -12.36356 -12.16752 -12.10062 -11.77446 -11.50720 -11.10546 -10.93584 -10.46907 -9.89019 -9.81874 -8.43070 -5.94165 1.37757 1.46967 1.54138 1.57636 1.69236 1.75724 1.85154 2.28404 2.56598 2.94800 3.02583 3.31880 3.50342 3.79316 3.96643 4.17950 4.29127 4.31856 4.44980 4.53266 4.57520 4.68619 4.74009 4.79398 4.94748 5.00973 5.11776 5.48626 5.98709 6.01407 6.38792 6.67723 7.04220 7.11049 7.30813 7.47323 7.91207 8.63388 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.025212 B = 0.005755 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.294847 B = 4863.904649 C = 5404.705515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.530 3.470 3 O -0.605 6.605 4 N -0.645 5.645 5 C 0.131 3.869 6 C -0.141 4.141 7 C 0.465 3.535 8 O -0.618 6.618 9 N -0.436 5.436 10 C -0.340 4.340 11 H 0.081 0.919 12 C 0.003 3.997 13 N -0.891 5.891 14 Si 0.990 3.010 15 H -0.257 1.257 16 H -0.284 1.284 17 H -0.280 1.280 18 C 0.143 3.857 19 C 0.493 3.507 20 O -0.552 6.552 21 O -0.518 6.518 22 C 0.120 3.880 23 H 0.111 0.889 24 H 0.115 0.885 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.133 0.867 28 H 0.117 0.883 29 H 0.275 0.725 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.413 0.587 33 H 0.069 0.931 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.564 3.862 -1.486 14.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.324 3.676 3 O -0.487 6.487 4 N -0.380 5.380 5 C 0.009 3.991 6 C -0.163 4.163 7 C 0.254 3.746 8 O -0.504 6.504 9 N -0.154 5.154 10 C -0.468 4.468 11 H 0.098 0.902 12 C -0.199 4.199 13 N -0.530 5.530 14 Si 0.814 3.186 15 H -0.181 1.181 16 H -0.210 1.210 17 H -0.205 1.205 18 C 0.018 3.982 19 C 0.335 3.665 20 O -0.441 6.441 21 O -0.330 6.330 22 C -0.004 4.004 23 H 0.130 0.870 24 H 0.134 0.866 25 H 0.114 0.886 26 H 0.119 0.881 27 H 0.151 0.849 28 H 0.135 0.865 29 H 0.085 0.915 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.272 0.728 33 H 0.087 0.913 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.893 4.505 -0.874 13.685 hybrid contribution 1.478 -0.793 -0.507 1.753 sum -11.414 3.712 -1.381 12.082 Atomic orbital electron populations 1.21899 0.86375 1.06398 1.06721 1.21482 0.92178 0.80186 0.73765 1.90693 1.72443 1.32194 1.53383 1.49777 1.08952 1.06545 1.72710 1.23136 0.96462 0.77471 1.02019 1.22946 0.99287 0.92513 1.01554 1.20258 0.84799 0.84173 0.85331 1.90515 1.37865 1.85982 1.36021 1.43567 1.34488 1.05931 1.31439 1.19635 1.33531 0.88183 1.05417 0.90155 1.25906 0.96450 1.02622 0.94920 1.69875 1.47953 1.30037 1.05102 0.84979 0.78965 0.77021 0.77610 1.18127 1.21018 1.20509 1.20922 0.90050 1.06085 0.81186 1.23965 0.85036 0.70397 0.87080 1.90630 1.19266 1.46680 1.87527 1.84447 1.46549 1.83640 1.18353 1.22700 0.84903 0.91783 1.01021 0.87015 0.86627 0.88554 0.88133 0.84933 0.86538 0.91518 0.85991 0.85378 0.72754 0.91270 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 10.15 71.24 0.72 -1.52 16 2 C 0.53 14.49 8.19 87.66 0.72 15.20 16 3 O -0.61 -22.72 17.86 -3.02 -0.05 -22.78 16 4 N -0.64 -17.64 3.69 -857.67 -3.16 -20.80 16 5 C 0.13 2.98 7.45 83.27 0.62 3.60 16 6 C -0.14 -4.62 3.10 -11.11 -0.03 -4.66 16 7 C 0.47 20.91 6.99 87.66 0.61 21.52 16 8 O -0.62 -33.14 15.59 -3.07 -0.05 -33.19 16 9 N -0.44 -20.19 2.18 -639.59 -1.39 -21.58 16 10 C -0.34 -17.91 9.34 84.04 0.79 -17.13 16 11 H 0.08 4.60 7.37 -2.91 -0.02 4.58 16 12 C 0.00 0.15 4.87 84.93 0.41 0.56 16 13 N -0.89 -43.76 9.28 21.66 0.20 -43.56 16 14 Si 0.99 39.82 29.60 68.60 2.03 41.85 16 15 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 16 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 17 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 18 C 0.14 5.33 4.91 85.63 0.42 5.75 16 19 C 0.49 19.50 5.71 71.23 0.41 19.91 16 20 O -0.55 -27.25 16.79 21.95 0.37 -26.88 16 21 O -0.52 -15.64 13.42 -51.43 -0.69 -16.34 16 22 C 0.12 4.03 7.96 83.19 0.66 4.69 16 23 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.10 1.35 8.12 -2.39 -0.02 1.33 16 26 H 0.10 2.25 8.10 -2.39 -0.02 2.23 16 27 H 0.13 1.79 7.89 -2.39 -0.02 1.77 16 28 H 0.12 3.72 7.15 -2.39 -0.02 3.70 16 29 H 0.27 12.84 8.31 -92.71 -0.77 12.07 16 30 H 0.12 4.78 6.37 -2.38 -0.02 4.76 16 31 H 0.13 3.33 6.41 -2.39 -0.02 3.32 16 32 H 0.41 9.32 9.10 -74.06 -0.67 8.65 16 33 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.09 3.15 7.46 -2.39 -0.02 3.13 16 Total: -1.00 -78.74 299.11 3.05 -75.68 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.47 Total: 19.68 kcal Atomic # 6 Polarization: 42.59 SS G_CDS: 5.33 Total: 47.92 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -4.35 Total: -85.95 kcal Atomic # 8 Polarization: -98.76 SS G_CDS: -0.42 Total: -99.18 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -78.74 3.05 -75.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609584367.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.349 kcal (2) G-P(sol) polarization free energy of solvation -78.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds