Wall clock time and date at job start Mon Mar 30 2020 01:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 119.99909 * 2 1 4 4 C 1.38844 * 119.99912 * 179.97438 * 2 1 3 5 5 N 1.30626 * 126.38593 * 0.02688 * 4 2 1 6 6 O 1.21296 * 110.12748 * 179.97438 * 5 4 2 7 7 C 1.33657 * 109.97659 * 0.02562 * 6 5 4 8 8 C 1.50693 * 126.46023 * 180.02562 * 7 6 5 9 9 N 1.46500 * 109.47447 * 269.97303 * 8 7 6 10 10 C 1.36943 * 120.00016 * 89.99472 * 9 8 7 11 11 H 1.07998 * 119.99775 * 9.99766 * 10 9 8 12 12 C 1.38811 * 120.00075 * 189.99429 * 10 9 8 13 13 N 1.31620 * 120.00125 * 24.61097 * 12 10 9 14 14 Si 1.86797 * 120.00000 * 204.61328 * 12 10 9 15 15 H 1.48496 * 109.47170 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47014 * 119.99815 * 14 12 10 17 17 H 1.48494 * 109.47260 * 240.00142 * 14 12 10 18 18 C 1.46496 * 120.00154 * 270.00702 * 9 8 7 19 19 C 1.50704 * 109.47610 * 88.32739 * 18 9 8 20 20 O 1.20820 * 119.99623 * 0.02562 * 19 18 9 21 21 O 1.34224 * 119.99802 * 180.02562 * 19 18 9 22 22 N 1.31046 * 107.07709 * 359.76356 * 7 6 5 23 23 H 1.09009 * 109.46612 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.46897 * 240.00354 * 1 2 3 25 25 H 1.08998 * 109.47163 * 119.99951 * 1 2 3 26 26 H 1.09003 * 109.47303 * 89.99802 * 3 2 1 27 27 H 1.09004 * 109.47196 * 209.99737 * 3 2 1 28 28 H 1.08999 * 109.47113 * 329.99800 * 3 2 1 29 29 H 1.09007 * 109.47399 * 29.97527 * 8 7 6 30 30 H 1.09002 * 109.47442 * 149.97000 * 8 7 6 31 31 H 0.96996 * 120.00162 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.47522 * 208.33050 * 18 9 8 33 33 H 1.09008 * 109.47121 * 328.32609 * 18 9 8 34 34 H 0.96704 * 116.99472 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1592 -1.2024 0.0005 5 7 1.6360 -2.3993 0.0006 6 8 2.5123 -3.2380 0.0006 7 6 3.7107 -2.6462 0.0011 8 6 5.0503 -3.3364 0.0008 9 7 5.4846 -3.5604 1.3819 10 6 5.1443 -4.7194 2.0272 11 1 4.6987 -5.5338 1.4754 12 6 5.3721 -4.8473 3.3905 13 7 5.4439 -3.7742 4.1493 14 14 5.5769 -6.5424 4.1482 15 1 5.4551 -7.5760 3.0890 16 1 6.9150 -6.6417 4.7845 17 1 4.5242 -6.7569 5.1732 18 6 6.2827 -2.5446 2.0727 19 6 5.3650 -1.5593 2.7496 20 8 4.1672 -1.6923 2.6641 21 8 5.8784 -0.5341 3.4474 22 7 3.5011 -1.3526 -0.0037 23 1 -0.3633 1.0278 -0.0005 24 1 -0.3633 -0.5138 0.8900 25 1 -0.3633 -0.5138 -0.8900 26 1 2.3792 1.5835 1.0277 27 1 3.1500 1.1384 -0.5138 28 1 1.6084 2.0284 -0.5139 29 1 4.9656 -4.2938 -0.5133 30 1 5.7809 -2.7115 -0.5130 31 1 5.6035 -3.8636 5.1019 32 1 6.9145 -3.0250 2.8198 33 1 6.9086 -2.0209 1.3501 34 1 5.2501 0.0720 3.8636 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610107241.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:58 Heat of formation + Delta-G solvation = 29.383612 kcal Electronic energy + Delta-G solvation = -21921.499856 eV Core-core repulsion = 18473.959518 eV Total energy + Delta-G solvation = -3447.540338 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.24810 -38.66998 -36.95449 -36.08810 -34.37826 -33.88395 -32.05013 -30.66314 -28.28095 -27.65469 -26.31126 -25.29105 -22.99187 -21.94473 -20.57638 -19.90303 -17.20370 -17.09527 -16.87591 -16.57292 -15.41772 -15.29624 -15.22355 -14.60741 -14.56347 -14.11921 -13.66139 -13.45274 -13.36471 -12.50562 -12.45396 -11.99790 -11.85881 -11.60848 -11.38721 -11.15727 -11.00248 -10.94345 -10.67867 -10.28139 -10.14660 -9.99701 -9.98973 -9.40283 -9.24428 -8.66346 -7.56174 -7.41249 -6.11335 -3.41911 2.27889 2.99511 3.28594 3.36773 3.39704 3.44133 3.94923 4.03722 4.25172 4.53004 4.77312 5.08813 5.13133 5.23804 5.36315 5.48779 5.64909 5.76968 5.83422 5.95588 5.99154 6.14859 6.27743 6.44518 6.87159 6.90913 6.93815 7.29799 7.56671 7.65288 7.90161 7.93256 8.80509 9.34422 9.39878 9.54917 9.86034 10.98707 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.023137 B = 0.006973 C = 0.006210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.883411 B = 4014.659938 C = 4507.876919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.598 5.598 3 C 0.118 3.882 4 C 0.422 3.578 5 N -0.453 5.453 6 O 0.052 5.948 7 C 0.209 3.791 8 C 0.220 3.780 9 N -0.543 5.543 10 C -0.267 4.267 11 H 0.091 0.909 12 C 0.007 3.993 13 N -0.895 5.895 14 Si 0.918 3.082 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.291 1.291 18 C 0.184 3.816 19 C 0.480 3.520 20 O -0.507 6.507 21 O -0.544 6.544 22 N -0.518 5.518 23 H 0.074 0.926 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.260 0.740 32 H 0.119 0.881 33 H 0.059 0.941 34 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.780 7.057 -7.444 10.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.327 5.327 3 C -0.026 4.026 4 C 0.062 3.938 5 N -0.184 5.184 6 O 0.010 5.990 7 C -0.015 4.015 8 C 0.089 3.911 9 N -0.262 5.262 10 C -0.395 4.395 11 H 0.109 0.891 12 C -0.192 4.192 13 N -0.538 5.538 14 Si 0.746 3.254 15 H -0.198 1.198 16 H -0.212 1.212 17 H -0.218 1.218 18 C 0.056 3.944 19 C 0.320 3.680 20 O -0.391 6.391 21 O -0.355 6.355 22 N -0.258 5.258 23 H 0.092 0.908 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.137 0.863 33 H 0.077 0.923 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.523 6.997 -7.483 10.357 hybrid contribution -0.753 -0.171 1.357 1.561 sum -2.276 6.826 -6.126 9.450 Atomic orbital electron populations 1.21456 0.78063 1.01716 1.01509 1.44758 1.04453 1.00526 1.83012 1.21472 0.96948 0.83067 1.01088 1.21873 0.86310 0.87478 0.98137 1.74607 1.13194 0.98018 1.32577 1.85164 1.12960 1.33016 1.67852 1.30773 0.92599 0.87297 0.90828 1.20099 0.83334 0.98341 0.89288 1.44808 1.55968 1.16136 1.09301 1.19524 1.39056 0.89250 0.91690 0.89084 1.24917 1.00542 0.97987 0.95750 1.69902 1.51053 1.27597 1.05261 0.85987 0.77497 0.82968 0.78908 1.19780 1.21174 1.21796 1.20574 0.91184 0.87230 0.95449 1.24843 0.90081 0.77981 0.75119 1.90541 1.17648 1.71808 1.59131 1.84595 1.45640 1.39760 1.65480 1.71626 1.11733 1.16335 1.26127 0.90767 0.92987 0.93045 0.93790 0.90929 0.91847 0.88879 0.89062 0.92913 0.86306 0.92308 0.76532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.62 10.51 59.85 0.63 2.25 16 2 N -0.60 -10.52 3.39 -193.15 -0.65 -11.17 16 3 C 0.12 1.65 10.57 59.85 0.63 2.28 16 4 C 0.42 9.16 8.35 -321.19 -2.68 6.48 16 5 N -0.45 -10.47 11.84 28.63 0.34 -10.13 16 6 O 0.05 1.21 11.30 18.07 0.20 1.41 16 7 C 0.21 4.55 6.76 -12.99 -0.09 4.46 16 8 C 0.22 4.18 6.33 -5.20 -0.03 4.15 16 9 N -0.54 -12.40 2.10 -175.98 -0.37 -12.77 16 10 C -0.27 -6.73 9.70 -15.06 -0.15 -6.88 16 11 H 0.09 2.23 7.92 -52.49 -0.42 1.82 16 12 C 0.01 0.19 4.88 -17.43 -0.09 0.11 16 13 N -0.89 -24.48 9.08 55.49 0.50 -23.98 16 14 Si 0.92 20.70 29.62 -169.99 -5.03 15.67 16 15 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 C 0.18 4.09 5.57 -5.19 -0.03 4.06 16 19 C 0.48 11.54 6.45 36.01 0.23 11.77 16 20 O -0.51 -13.96 14.49 -18.75 -0.27 -14.23 16 21 O -0.54 -11.35 13.42 -39.24 -0.53 -11.88 16 22 N -0.52 -11.36 9.93 -12.67 -0.13 -11.49 16 23 H 0.07 0.75 7.79 -51.92 -0.40 0.35 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.08 7.69 -51.93 -0.40 0.68 16 28 H 0.06 0.65 7.92 -51.93 -0.41 0.24 16 29 H 0.09 1.54 8.03 -51.93 -0.42 1.12 16 30 H 0.09 1.45 7.91 -51.93 -0.41 1.04 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.12 2.83 6.27 -51.93 -0.33 2.50 16 33 H 0.06 1.10 7.92 -51.92 -0.41 0.69 16 34 H 0.38 6.60 9.10 45.56 0.41 7.01 16 LS Contribution 298.88 15.07 4.50 4.50 Total: -1.00 -34.25 298.88 -6.18 -40.43 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -3.18 Total: 4.95 kcal Atomic # 6 Polarization: 30.25 SS G_CDS: -1.57 Total: 28.68 kcal Atomic # 7 Polarization: -69.23 SS G_CDS: -0.31 Total: -69.53 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.59 Total: -24.70 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.25 -6.18 -40.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610107241.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.812 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds