Wall clock time and date at job start Mon Mar 30 2020 01:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00201 * 2 1 4 4 H 1.48503 * 109.47017 * 239.99738 * 3 2 1 5 5 H 1.48498 * 109.47024 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47228 * 120.00138 * 3 2 1 7 7 C 1.37876 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00209 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99997 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47011 * 179.97438 * 9 7 2 11 11 C 1.34784 * 119.99635 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99925 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99961 * 180.02562 * 11 10 9 14 14 C 1.50697 * 109.47266 * 180.02562 * 13 11 10 15 15 C 1.36207 * 120.66466 * 264.71728 * 14 13 11 16 16 N 1.32578 * 121.87586 * 179.74568 * 15 14 13 17 17 C 1.31265 * 122.77402 * 0.55037 * 16 15 14 18 18 C 1.40391 * 119.88454 * 359.72652 * 17 16 15 19 19 C 1.40378 * 122.08507 * 179.97438 * 18 17 16 20 20 C 1.36159 * 119.51950 * 180.02562 * 19 18 17 21 21 C 1.39380 * 121.09249 * 0.04140 * 20 19 18 22 22 C 1.36220 * 121.01849 * 359.97438 * 21 20 19 23 23 C 1.40234 * 119.48399 * 359.97438 * 22 21 20 24 24 H 0.96998 * 119.99718 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46877 * 59.99988 * 9 7 2 26 26 H 1.09002 * 109.46993 * 300.00334 * 9 7 2 27 27 H 0.96995 * 120.00292 * 0.27660 * 10 9 7 28 28 H 1.09004 * 109.46932 * 300.00223 * 13 11 10 29 29 H 1.08997 * 109.47392 * 59.99562 * 13 11 10 30 30 H 1.08005 * 119.06436 * 0.02562 * 15 14 13 31 31 H 1.08000 * 120.05854 * 179.75147 * 17 16 15 32 32 H 1.08007 * 120.23732 * 0.05131 * 19 18 17 33 33 H 1.08005 * 119.45638 * 180.02562 * 20 19 18 34 34 H 1.08001 * 119.49322 * 179.97438 * 21 20 19 35 35 H 1.08001 * 120.25274 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5612 -5.1049 0.0000 13 6 2.7329 -6.0289 0.0006 14 6 1.9794 -7.3339 -0.0008 15 6 1.7241 -7.9900 1.1653 16 7 1.0593 -9.1367 1.1924 17 6 0.6114 -9.7242 0.1074 18 6 0.8263 -9.1331 -1.1477 19 6 0.3682 -9.7211 -2.3372 20 6 0.6063 -9.1024 -3.5265 21 6 1.2985 -7.8940 -3.5834 22 6 1.7581 -7.2943 -2.4499 23 6 1.5307 -7.9020 -1.2067 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 3.1566 -3.4355 0.0046 28 1 3.3602 -5.9710 -0.8889 29 1 3.3589 -5.9713 0.8910 30 1 2.0694 -7.5616 2.0947 31 1 0.0781 -10.6606 0.1801 32 1 -0.1695 -10.6574 -2.3091 33 1 0.2530 -9.5556 -4.4410 34 1 1.4733 -7.4259 -4.5408 35 1 2.2935 -6.3582 -2.5083 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001618220080.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:44 Heat of formation + Delta-G solvation = 5.762306 kcal Electronic energy + Delta-G solvation = -19331.038318 eV Core-core repulsion = 16293.322947 eV Total energy + Delta-G solvation = -3037.715372 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.95667 -38.74573 -37.30318 -34.39387 -33.87339 -32.35440 -31.20423 -30.34384 -28.42131 -26.64482 -23.99012 -23.54424 -22.72481 -21.28648 -19.65860 -17.97769 -17.59143 -17.14078 -16.38224 -15.70488 -15.27513 -14.97747 -14.51207 -14.49429 -14.21069 -13.98175 -13.69257 -13.19787 -12.81663 -12.74365 -12.27265 -12.11908 -11.97635 -11.81981 -11.43981 -11.10376 -10.98205 -10.88242 -10.33901 -10.06221 -9.45593 -9.43166 -9.12471 -9.05189 -8.75872 -7.99310 -7.92297 -6.18665 -4.26177 0.36480 0.92732 1.91748 3.06257 3.23487 3.28510 3.29925 3.30736 3.92933 4.22206 4.34026 4.42720 4.53758 4.70415 4.74824 4.87477 4.97941 5.14463 5.16157 5.17464 5.33813 5.50904 5.51925 5.68991 5.75954 5.88503 6.01922 6.05014 6.34412 6.46600 6.63923 6.82096 7.27494 7.39063 7.48696 7.63090 7.94423 8.00947 8.57846 8.74696 9.05635 9.40571 10.91464 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.029685 B = 0.003892 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.003758 B = 7193.192824 C = 7654.097293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.712 5.712 11 C 0.499 3.501 12 O -0.546 6.546 13 C -0.105 4.105 14 C -0.084 4.084 15 C 0.082 3.918 16 N -0.484 5.484 17 C 0.134 3.866 18 C -0.111 4.111 19 C -0.091 4.091 20 C -0.121 4.121 21 C -0.103 4.103 22 C -0.102 4.102 23 C -0.009 4.009 24 H 0.267 0.733 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.391 0.609 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.151 0.849 31 H 0.160 0.840 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.983 -18.215 -4.955 19.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.361 5.361 11 C 0.283 3.717 12 O -0.424 6.424 13 C -0.146 4.146 14 C -0.086 4.086 15 C -0.061 4.061 16 N -0.190 5.190 17 C -0.037 4.037 18 C -0.113 4.113 19 C -0.111 4.111 20 C -0.139 4.139 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.014 4.014 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.223 0.777 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.168 0.832 31 H 0.178 0.822 32 H 0.149 0.851 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.862 -18.480 -4.058 19.535 hybrid contribution 0.941 1.588 -0.837 2.027 sum 5.803 -16.892 -4.895 18.520 Atomic orbital electron populations 1.69966 1.06137 1.27457 1.48696 1.24954 0.94906 0.99461 0.94650 0.86470 0.79419 0.82298 0.78700 1.20059 1.21049 1.20031 1.21187 0.93224 0.90444 1.53481 0.91915 1.19102 0.88290 0.81911 0.97727 1.46463 1.11146 1.06002 1.72486 1.20247 0.89329 0.84106 0.78062 1.90700 1.16728 1.84783 1.50239 1.20684 0.98009 0.90681 1.05199 1.20076 0.99194 0.95852 0.93510 1.21997 0.95672 0.91138 0.97332 1.67385 1.09339 1.10228 1.32088 1.23099 0.95420 0.98502 0.86677 1.18997 1.00722 0.95851 0.95698 1.20929 0.98949 0.99746 0.91464 1.20894 0.99145 0.95773 0.98070 1.20974 0.97222 0.95339 0.98661 1.21018 0.99985 0.99530 0.91416 1.17977 0.96091 0.93634 0.93742 0.92358 0.95588 0.95564 0.77663 0.88148 0.87803 0.83161 0.82238 0.85124 0.85755 0.85621 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.55 -14.65 9.28 -34.44 -0.32 -14.97 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.25 6.60 5.43 -5.19 -0.03 6.57 16 10 N -0.71 -14.58 5.55 -61.47 -0.34 -14.92 16 11 C 0.50 9.71 7.82 -10.98 -0.09 9.63 16 12 O -0.55 -13.26 16.03 5.56 0.09 -13.17 16 13 C -0.10 -1.44 5.31 -29.04 -0.15 -1.60 16 14 C -0.08 -1.26 4.39 -104.45 -0.46 -1.72 16 15 C 0.08 1.22 10.72 -17.96 -0.19 1.03 16 16 N -0.48 -7.20 10.30 -13.16 -0.14 -7.34 16 17 C 0.13 1.72 11.05 -16.98 -0.19 1.53 16 18 C -0.11 -1.47 5.74 -106.86 -0.61 -2.09 16 19 C -0.09 -0.96 9.81 -39.52 -0.39 -1.35 16 20 C -0.12 -1.23 9.94 -39.90 -0.40 -1.62 16 21 C -0.10 -1.17 9.95 -39.88 -0.40 -1.57 16 22 C -0.10 -1.38 9.33 -39.56 -0.37 -1.75 16 23 C -0.01 -0.14 5.75 -106.82 -0.61 -0.75 16 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.39 6.69 8.32 -40.82 -0.34 6.35 16 28 H 0.10 1.13 6.83 -51.93 -0.35 0.77 16 29 H 0.10 1.14 8.05 -51.93 -0.42 0.72 16 30 H 0.15 1.95 8.05 -52.48 -0.42 1.53 16 31 H 0.16 1.44 8.06 -52.49 -0.42 1.01 16 32 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 34 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.13 1.67 6.65 -52.49 -0.35 1.32 16 LS Contribution 308.34 15.07 4.65 4.65 Total: -1.00 -34.43 308.34 -8.28 -42.72 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -3.95 Total: 4.72 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -4.30 Total: -6.98 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.26 Total: -47.60 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.09 Total: -13.17 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.43 -8.28 -42.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618220080.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.478 kcal (2) G-P(sol) polarization free energy of solvation -34.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds