Wall clock time and date at job start Mon Mar 30 2020 01:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86801 * 120.00353 * 2 1 4 4 H 1.48500 * 109.47231 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47169 * 300.00072 * 3 2 1 6 6 H 1.48501 * 109.46812 * 59.99972 * 3 2 1 7 7 C 1.38955 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99659 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99928 * 359.97438 * 7 2 1 10 10 C 1.34770 * 119.99896 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00161 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00278 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47638 * 180.02562 * 12 10 9 14 14 C 1.34764 * 120.00259 * 180.02562 * 13 12 10 15 15 O 1.21288 * 120.00119 * 355.02583 * 14 13 12 16 16 C 1.50704 * 120.00339 * 175.02684 * 14 13 12 17 17 N 1.46505 * 115.54882 * 323.53032 * 16 14 13 18 18 C 1.34768 * 120.00091 * 303.48534 * 17 16 14 19 19 N 1.34774 * 120.00477 * 175.08560 * 18 17 16 20 20 O 1.21590 * 119.99987 * 354.80379 * 18 17 16 21 21 C 1.52998 * 117.49952 * 109.19491 * 16 14 13 22 22 C 1.52997 * 117.50103 * 177.85817 * 16 14 13 23 23 H 0.97001 * 119.99984 * 0.02562 * 1 2 3 24 24 H 0.96996 * 120.00191 * 0.02562 * 9 7 2 25 25 H 1.09001 * 109.47134 * 59.99998 * 12 10 9 26 26 H 1.08997 * 109.46430 * 300.00056 * 12 10 9 27 27 H 0.97011 * 119.99296 * 359.97438 * 13 12 10 28 28 H 0.96998 * 119.99846 * 123.47452 * 17 16 14 29 29 H 0.96999 * 119.99711 * 359.97438 * 19 18 17 30 30 H 0.96999 * 120.00547 * 179.97438 * 19 18 17 31 31 H 1.08997 * 117.50586 * 215.00409 * 21 16 14 32 32 H 1.09004 * 117.49829 * 0.03027 * 21 16 14 33 33 H 1.08996 * 117.49896 * 359.97438 * 22 16 14 34 34 H 1.09002 * 117.49549 * 145.00054 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3232 -2.3907 0.0016 10 6 1.9970 -3.5578 0.0026 11 8 3.2100 -3.5579 0.0031 12 6 1.2435 -4.8630 0.0032 13 7 2.1954 -5.9766 0.0050 14 6 1.7462 -7.2471 0.0052 15 8 0.5573 -7.4700 0.0951 16 6 2.7209 -8.3911 -0.1061 17 7 3.8723 -8.1572 -0.9812 18 6 3.6804 -7.8128 -2.2699 19 7 4.7353 -7.5012 -3.0486 20 8 2.5558 -7.7882 -2.7316 21 6 2.9427 -9.2538 1.1378 22 6 2.1534 -9.8108 -0.0496 23 1 -0.4850 0.8401 -0.0004 24 1 0.3533 -2.3906 0.0016 25 1 0.6172 -4.9213 -0.8870 26 1 0.6166 -4.9200 0.8930 27 1 3.1492 -5.7993 0.0052 28 1 4.7729 -8.2501 -0.6330 29 1 5.6328 -7.5244 -2.6814 30 1 4.5972 -7.2537 -3.9763 31 1 3.9452 -9.6475 1.3051 32 1 2.3833 -8.9943 2.0366 33 1 1.0751 -9.9174 0.0685 34 1 2.6368 -10.5708 -0.6635 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627009909.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:14 Heat of formation + Delta-G solvation = -109.025732 kcal Electronic energy + Delta-G solvation = -20600.211849 eV Core-core repulsion = 17146.669631 eV Total energy + Delta-G solvation = -3453.542218 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.72956 -40.53198 -39.89077 -37.72621 -36.29524 -35.40387 -34.89821 -33.41377 -33.01619 -29.66715 -26.76500 -24.68773 -23.62964 -22.77103 -21.44809 -20.90851 -20.08574 -19.39762 -19.13936 -17.77568 -17.44015 -17.11252 -16.76042 -16.56157 -16.12726 -15.93012 -15.65308 -15.44129 -15.21424 -15.12669 -14.28904 -13.94889 -13.65083 -13.57581 -12.93003 -12.49658 -12.47025 -12.17270 -12.13322 -12.09637 -11.60496 -11.48710 -11.13841 -10.72519 -10.61210 -10.25922 -10.11914 -10.01561 -8.53208 -6.04126 1.30024 1.34287 1.41854 1.56414 1.71993 1.85895 1.91250 2.13270 2.29702 2.84020 3.05661 3.13601 3.45695 3.66048 3.71992 3.85959 4.16566 4.32631 4.34420 4.49628 4.67741 4.93385 5.15560 5.19562 5.34453 5.36370 5.81884 5.88420 5.98730 6.40612 6.47005 6.99860 7.05346 7.07796 7.39695 7.62110 7.89106 8.64132 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.028061 B = 0.004194 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.582473 B = 6674.176585 C = 7153.391906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.088 0.912 9 N -0.558 5.558 10 C 0.434 3.566 11 O -0.621 6.621 12 C 0.120 3.880 13 N -0.698 5.698 14 C 0.547 3.453 15 O -0.576 6.576 16 C 0.060 3.940 17 N -0.693 5.693 18 C 0.697 3.303 19 N -0.844 5.844 20 O -0.636 6.636 21 C -0.109 4.109 22 C -0.145 4.145 23 H 0.280 0.720 24 H 0.398 0.602 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.411 0.589 28 H 0.423 0.577 29 H 0.416 0.584 30 H 0.420 0.580 31 H 0.153 0.847 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.810 -17.026 0.534 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.823 3.177 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.106 0.894 9 N -0.193 5.193 10 C 0.221 3.779 11 O -0.509 6.509 12 C -0.008 4.008 13 N -0.350 5.350 14 C 0.333 3.667 15 O -0.455 6.455 16 C -0.033 4.033 17 N -0.352 5.352 18 C 0.395 3.605 19 N -0.413 5.413 20 O -0.516 6.516 21 C -0.147 4.147 22 C -0.184 4.184 23 H 0.090 0.910 24 H 0.232 0.768 25 H 0.098 0.902 26 H 0.115 0.885 27 H 0.249 0.751 28 H 0.262 0.738 29 H 0.247 0.753 30 H 0.253 0.747 31 H 0.170 0.830 32 H 0.131 0.869 33 H 0.113 0.887 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.651 -16.978 0.345 19.533 hybrid contribution 0.584 1.264 -0.368 1.440 sum 10.235 -15.714 -0.023 18.753 Atomic orbital electron populations 1.69696 1.07154 1.29675 1.49163 1.26189 0.96541 1.02823 0.95612 0.84766 0.78141 0.76437 0.78340 1.19232 1.19673 1.19487 1.19804 0.93012 0.83400 1.50478 0.89392 1.41852 1.09566 1.04651 1.63254 1.20267 0.88124 0.85710 0.83788 1.90445 1.14886 1.87467 1.58085 1.20772 0.91902 0.84460 1.03688 1.45491 1.11072 1.04391 1.74072 1.20113 0.88614 0.83408 0.74584 1.90653 1.17912 1.84979 1.51965 1.20238 0.90930 0.91230 1.00875 1.44030 1.08564 1.74930 1.07693 1.16285 0.84899 0.77572 0.81761 1.42732 1.08431 1.74886 1.15274 1.91003 1.24687 1.61520 1.74414 1.23619 1.04521 0.96055 0.90499 1.23436 1.01418 0.92372 1.01220 0.91008 0.76821 0.90190 0.88486 0.75122 0.73785 0.75268 0.74742 0.82953 0.86855 0.88658 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.55 13.05 21.66 0.28 -49.26 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 3 Si 1.00 41.94 29.55 68.60 2.03 43.97 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 6 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.34 -18.91 9.68 84.04 0.81 -18.10 16 8 H 0.09 5.14 7.16 -2.91 -0.02 5.12 16 9 N -0.56 -29.07 5.29 -306.98 -1.62 -30.69 16 10 C 0.43 21.06 7.85 87.66 0.69 21.75 16 11 O -0.62 -32.78 15.24 -3.08 -0.05 -32.82 16 12 C 0.12 4.89 6.16 85.63 0.53 5.41 16 13 N -0.70 -25.71 5.48 -466.79 -2.56 -28.26 16 14 C 0.55 19.29 6.41 87.66 0.56 19.85 16 15 O -0.58 -24.11 16.27 -3.05 -0.05 -24.16 16 16 C 0.06 1.45 2.31 2.86 0.01 1.46 16 17 N -0.69 -13.56 5.21 -441.45 -2.30 -15.86 16 18 C 0.70 18.31 8.63 179.06 1.54 19.86 16 19 N -0.84 -13.96 8.88 -184.75 -1.64 -15.60 16 20 O -0.64 -24.55 16.51 -4.00 -0.07 -24.62 16 21 C -0.11 -1.58 10.16 30.62 0.31 -1.27 16 22 C -0.15 -2.95 9.97 30.62 0.31 -2.65 16 23 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 24 H 0.40 20.10 7.90 -92.71 -0.73 19.36 16 25 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 26 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 27 H 0.41 14.69 7.22 -92.70 -0.67 14.03 16 28 H 0.42 4.38 8.84 -92.71 -0.82 3.56 16 29 H 0.42 3.49 8.85 -92.71 -0.82 2.67 16 30 H 0.42 6.73 8.93 -92.71 -0.83 5.90 16 31 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.09 2.34 7.67 -2.39 -0.02 2.32 16 34 H 0.12 2.00 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -80.69 309.03 -3.40 -84.09 By element: Atomic # 1 Polarization: 49.69 SS G_CDS: -2.65 Total: 47.04 kcal Atomic # 6 Polarization: 40.97 SS G_CDS: 5.23 Total: 46.19 kcal Atomic # 7 Polarization: -131.84 SS G_CDS: -7.83 Total: -139.67 kcal Atomic # 8 Polarization: -81.45 SS G_CDS: -0.16 Total: -81.61 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -80.69 -3.40 -84.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627009909.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.937 kcal (2) G-P(sol) polarization free energy of solvation -80.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds